CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 249

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B249I249TI3512TnonsynaTaaCa461461110799-10801
ORF1ab/nsp5A-B249I249VI3512VnonsynAtaGta193193110799-10801
ORF1ab/nsp5A-B249I249del1I3512del1delaTaa-a82790.96341510799-10801
ORF1ab/nsp5A-B249I249del1I3512del1delatAat-8230.036585410799-10801
ORF1ab/nsp5A-B249I249delI3512deldelATA---4949110799-10801
ORF1ab/nsp5A-B249I249LI3512LnonsynAtaCta21180.85714310799-10801
ORF1ab/nsp5A-B249I249LI3512LnonsynAtaTta2120.095238110799-10801
ORF1ab/nsp5A-B249I249LI3512LnonsynAtACtC2110.04761910799-10801
ORF1ab/nsp5A-B249I249RI3512RnonsynaTaaGa1212110799-10801
ORF1ab/nsp5A-B249I249MI3512MnonsynatAatG88110799-10801
ORF1ab/nsp5A-B249I249II3512IsynatAatT530.610799-10801
ORF1ab/nsp5A-B249I249II3512IsynatAatC520.410799-10801
ORF1ab/nsp5A-B249I249del2I3512del2delATa--a22110799-10801
ORF1ab/nsp5A-B249I249XI3512XnonsynATaTAa11110799-10801
ORF1ab/nsp5A-B249I249AI3512AnonsynATaGCa11110799-10801
ORF1ab/nsp5A-B249I249SI3512SnonsynaTAaGC11110799-10801
ORF1ab/nsp5A-B249I249KI3512KnonsynaTaaAa11110799-10801

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B249I249TaTaaCa461461All0.000088
ORF1ab/nsp5A-B249I249TaTaaCa267267AY.40.000416
ORF1ab/nsp5A-B249I249VAtaGta193193All0.000037
ORF1ab/nsp5A-B249I249del1aTaa-a7982All0.000015
ORF1ab/nsp5A-B249I249del1atAat-382All0.000001
ORF1ab/nsp5A-B249I249del1aTaa-a6666B.1.1.70.000059
ORF1ab/nsp5A-B249I249TaTaaCa5151B.1.4450.6
ORF1ab/nsp5A-B249I249delATA---4949All0.000009
ORF1ab/nsp5A-B249I249VAtaGta3232AY.390.000791
ORF1ab/nsp5A-B249I249VAtaGta2424AY.40.000037
ORF1ab/nsp5A-B249I249LAtaCta1821All0.000003
ORF1ab/nsp5A-B249I249LAtaTta221All0
ORF1ab/nsp5A-B249I249LAtACtC121All0
ORF1ab/nsp5A-B249I249VAtaGta2121C.370.002437
ORF1ab/nsp5A-B249I249delATA---1717B.1.1.70.000015
ORF1ab/nsp5A-B249I249TaTaaCa1515AY.1030.000093
ORF1ab/nsp5A-B249I249VAtaGta1515AY.430.000066
ORF1ab/nsp5A-B249I249TaTaaCa1515B.1.617.20.000056
ORF1ab/nsp5A-B249I249TaTaaCa1313AY.390.000321
ORF1ab/nsp5A-B249I249RaTaaGa1212All0.000002
ORF1ab/nsp5A-B249I249TaTaaCa1212B.1.20.000106
ORF1ab/nsp5A-B249I249VAtaGta1212B.1.258.160.01964
ORF1ab/nsp5A-B249I249VAtaGta1212B.1.617.20.000045
ORF1ab/nsp5A-B249I249RaTaaGa1010B.1.1.5190.000397
ORF1ab/nsp5A-B249I249VAtaGta99AY.800.010158
ORF1ab/nsp5A-B249I249MatAatG88All0.000002
ORF1ab/nsp5A-B249I249TaTaaCa88AY.430.000035
ORF1ab/nsp5A-B249I249VAtaGta88AY.9.20.000294
ORF1ab/nsp5A-B249I249TaTaaCa88B.10.000073
ORF1ab/nsp5A-B249I249TaTaaCa77B.1.3110.001922
ORF1ab/nsp5A-B249I249TaTaaCa66AY.440.000037
ORF1ab/nsp5A-B249I249IatAatT35All0.000001
ORF1ab/nsp5A-B249I249IatAatC25All0
ORF1ab/nsp5A-B249I249VAtaGta55AY.250.00003
ORF1ab/nsp5A-B249I249VAtaGta55B.1.1.70.000004
ORF1ab/nsp5A-B249I249VAtaGta55B.1.4290.000118
ORF1ab/nsp5A-B249I249LAtaCta55B.1.5650.004052
ORF1ab/nsp5A-B249I249delATA---440.222222
ORF1ab/nsp5A-B249I249TaTaaCa44AY.30.00004
ORF1ab/nsp5A-B249I249LAtaCta44AY.40.000006
ORF1ab/nsp5A-B249I249VAtaGta44AY.460.000416
ORF1ab/nsp5A-B249I249TaTaaCa44B.1.5650.003241
ORF1ab/nsp5A-B249I249VAtaGta44B.1.6000.023392
ORF1ab/nsp5A-B249I249VAtaGta33AY.1020.00008
ORF1ab/nsp5A-B249I249TaTaaCa33AY.1180.000188
ORF1ab/nsp5A-B249I249TaTaaCa33AY.250.000018
ORF1ab/nsp5A-B249I249LAtaCta33B.1.1.370.000579
ORF1ab/nsp5A-B249I249del1aTaa-a33B.1.177.820.001432
ORF1ab/nsp5A-B249I249del1aTaa-a33B.1.3510.000089
ORF1ab/nsp5A-B249I249VAtaGta33P.10.000047
ORF1ab/nsp5A-B249I249TaTaaCa220.111111
ORF1ab/nsp5A-B249I249VAtaGta22A.2.50.000998
ORF1ab/nsp5A-B249I249del2ATa--a22All0
ORF1ab/nsp5A-B249I249VAtaGta22AY.1000.000092
ORF1ab/nsp5A-B249I249TaTaaCa22AY.1020.000053
ORF1ab/nsp5A-B249I249VAtaGta22AY.1030.000012
ORF1ab/nsp5A-B249I249VAtaGta22AY.1200.000074
ORF1ab/nsp5A-B249I249TaTaaCa22AY.290.000032
ORF1ab/nsp5A-B249I249VAtaGta22AY.30.00002
ORF1ab/nsp5A-B249I249delATA---22AY.40.000003
ORF1ab/nsp5A-B249I249delATA---22AY.4.50.000215
ORF1ab/nsp5A-B249I249TaTaaCa22AY.420.00008
ORF1ab/nsp5A-B249I249delATA---22AY.430.000009
ORF1ab/nsp5A-B249I249TaTaaCa22AY.46.40.000329
ORF1ab/nsp5A-B249I249TaTaaCa22AY.50.000041
ORF1ab/nsp5A-B249I249del1aTaa-a22AY.520.001629
ORF1ab/nsp5A-B249I249VAtaGta22AY.770.002255
ORF1ab/nsp5A-B249I249delATA---22AY.90.000135
ORF1ab/nsp5A-B249I249TaTaaCa22B.1.10.000036
ORF1ab/nsp5A-B249I249delATA---22B.1.10.000036
ORF1ab/nsp5A-B249I249LAtaCta22B.1.1.70.000002
ORF1ab/nsp5A-B249I249TaTaaCa22B.1.1.70.000002
ORF1ab/nsp5A-B249I249IatAatT22B.1.120.016
ORF1ab/nsp5A-B249I249TaTaaCa22B.1.1600.000062
ORF1ab/nsp5A-B249I249del1aTaa-a22B.1.1600.000062
ORF1ab/nsp5A-B249I249delATA---22B.1.1770.000026
ORF1ab/nsp5A-B249I249IatAatC22B.1.177.810.000379
ORF1ab/nsp5A-B249I249MatAatG22B.1.2430.000139
ORF1ab/nsp5A-B249I249TaTaaCa22B.1.2430.000139
ORF1ab/nsp5A-B249I249VAtaGta22B.1.36.80.002
ORF1ab/nsp5A-B249I249TaTaaCa22B.1.3690.00057
ORF1ab/nsp5A-B249I249LAtaCta22B.1.617.20.000008
ORF1ab/nsp5A-B249I249VAtaGta11AE.30.032258
ORF1ab/nsp5A-B249I249SaTAaGC11All0
ORF1ab/nsp5A-B249I249AATaGCa11All0
ORF1ab/nsp5A-B249I249KaTaaAa11All0
ORF1ab/nsp5A-B249I249XATaTAa11All0
ORF1ab/nsp5A-B249I249VAtaGta11AP.10.001502
ORF1ab/nsp5A-B249I249TaTaaCa11AY.1100.000113
ORF1ab/nsp5A-B249I249TaTaaCa11AY.1170.000085
ORF1ab/nsp5A-B249I249VAtaGta11AY.1170.000085
ORF1ab/nsp5A-B249I249MatAatG11AY.160.00038
ORF1ab/nsp5A-B249I249TaTaaCa11AY.200.000039
ORF1ab/nsp5A-B249I249VAtaGta11AY.200.000039
ORF1ab/nsp5A-B249I249delATA---11AY.250.000006
ORF1ab/nsp5A-B249I249VAtaGta11AY.260.000028
ORF1ab/nsp5A-B249I249TaTaaCa11AY.270.000065
ORF1ab/nsp5A-B249I249VAtaGta11AY.340.000097
ORF1ab/nsp5A-B249I249delATA---11AY.360.000148
ORF1ab/nsp5A-B249I249del2ATa--a11AY.360.000148
ORF1ab/nsp5A-B249I249TaTaaCa11AY.380.000499
ORF1ab/nsp5A-B249I249LAtaCta11AY.390.000025
ORF1ab/nsp5A-B249I249IatAatT11AY.40.000002
ORF1ab/nsp5A-B249I249LAtACtC11AY.440.000006
ORF1ab/nsp5A-B249I249delATA---11AY.440.000006
ORF1ab/nsp5A-B249I249TaTaaCa11AY.450.000122
ORF1ab/nsp5A-B249I249LAtaCta11AY.450.000122
ORF1ab/nsp5A-B249I249TaTaaCa11AY.460.000104
ORF1ab/nsp5A-B249I249VAtaGta11AY.46.40.000165
ORF1ab/nsp5A-B249I249MatAatG11AY.46.60.000072
ORF1ab/nsp5A-B249I249delATA---11AY.540.000095
ORF1ab/nsp5A-B249I249delATA---11AY.60.000041
ORF1ab/nsp5A-B249I249VAtaGta11AY.60.000041
ORF1ab/nsp5A-B249I249TaTaaCa11AY.60.000041
ORF1ab/nsp5A-B249I249delATA---11AY.600.000938
ORF1ab/nsp5A-B249I249TaTaaCa11AY.610.000105
ORF1ab/nsp5A-B249I249SaTAaGC11AY.670.000464
ORF1ab/nsp5A-B249I249TaTaaCa11AY.7.10.000113
ORF1ab/nsp5A-B249I249delATA---11AY.810.001992
ORF1ab/nsp5A-B249I249TaTaaCa11AY.90.000068
ORF1ab/nsp5A-B249I249TaTaaCa11AY.98.10.000048
ORF1ab/nsp5A-B249I249LAtaTta11AY.990.001049
ORF1ab/nsp5A-B249I249XATaTAa11AY.990.001049
ORF1ab/nsp5A-B249I249TaTaaCa11B0.000128
ORF1ab/nsp5A-B249I249del1atAat-11B0.000128
ORF1ab/nsp5A-B249I249MatAatG11B.10.000009
ORF1ab/nsp5A-B249I249delATA---11B.10.000009
ORF1ab/nsp5A-B249I249AATaGCa11B.1.10.000018
ORF1ab/nsp5A-B249I249VAtaGta11B.1.10.000018
ORF1ab/nsp5A-B249I249RaTaaGa11B.1.10.000018
ORF1ab/nsp5A-B249I249TaTaaCa11B.1.1.10.000327
ORF1ab/nsp5A-B249I249VAtaGta11B.1.1.1760.000439
ORF1ab/nsp5A-B249I249MatAatG11B.1.1.2290.005747
ORF1ab/nsp5A-B249I249TaTaaCa11B.1.1.250.000569
ORF1ab/nsp5A-B249I249MatAatG11B.1.1.2840.000107
ORF1ab/nsp5A-B249I249delATA---11B.1.1.3110.000358
ORF1ab/nsp5A-B249I249TaTaaCa11B.1.1.3160.000925
ORF1ab/nsp5A-B249I249VAtaGta11B.1.1.3980.003226
ORF1ab/nsp5A-B249I249del2ATa--a11B.1.1.70.000001
ORF1ab/nsp5A-B249I249TaTaaCa11B.1.1.980.018519
ORF1ab/nsp5A-B249I249VAtaGta11B.1.1770.000013
ORF1ab/nsp5A-B249I249delATA---11B.1.177.160.000664
ORF1ab/nsp5A-B249I249delATA---11B.1.177.210.000076
ORF1ab/nsp5A-B249I249delATA---11B.1.177.40.000211
ORF1ab/nsp5A-B249I249del1aTaa-a11B.1.177.60.000977
ORF1ab/nsp5A-B249I249VAtaGta11B.1.177.680.015152
ORF1ab/nsp5A-B249I249delATA---11B.1.177.870.000728
ORF1ab/nsp5A-B249I249RaTaaGa11B.1.20.000009
ORF1ab/nsp5A-B249I249VAtaGta11B.1.20.000009
ORF1ab/nsp5A-B249I249TaTaaCa11B.1.230.006061
ORF1ab/nsp5A-B249I249VAtaGta11B.1.2580.000067
ORF1ab/nsp5A-B249I249TaTaaCa11B.1.2580.000067
ORF1ab/nsp5A-B249I249delATA---11B.1.2580.000067
ORF1ab/nsp5A-B249I249KaTaaAa11B.1.258.170.000104
ORF1ab/nsp5A-B249I249TaTaaCa11B.1.351.50.0006
ORF1ab/nsp5A-B249I249del1aTaa-a11B.1.36.10.00114
ORF1ab/nsp5A-B249I249del1atAat-11B.1.3620.001541
ORF1ab/nsp5A-B249I249TaTaaCa11B.1.4090.000781
ORF1ab/nsp5A-B249I249TaTaaCa11B.1.4360.001029
ORF1ab/nsp5A-B249I249VAtaGta11B.1.5960.000087
ORF1ab/nsp5A-B249I249delATA---11B.1.617.20.000004
ORF1ab/nsp5A-B249I249MatAatG11B.1.617.20.000004
ORF1ab/nsp5A-B249I249del1atAat-11B.550.00295
ORF1ab/nsp5A-B249I249VAtaGta11D.20.000075
ORF1ab/nsp5A-B249I249TaTaaCa11L.20.011364
ORF1ab/nsp5A-B249I249delATA---11N.40.004255
ORF1ab/nsp5A-B249I249LAtaTta11P.1.140.000048
ORF1ab/nsp5A-B249I249del1aTaa-a11R.10.00009