CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 249
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| ORF1ab/nsp5A-B | 249 | I249T | I3512T | nonsyn | aTa | aCa | 461 | 461 | 1 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249V | I3512V | nonsyn | Ata | Gta | 193 | 193 | 1 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249del1 | I3512del1 | del | aTa | a-a | 82 | 79 | 0.963415 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249del1 | I3512del1 | del | atA | at- | 82 | 3 | 0.0365854 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249del | I3512del | del | ATA | --- | 49 | 49 | 1 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249L | I3512L | nonsyn | Ata | Cta | 21 | 18 | 0.857143 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249L | I3512L | nonsyn | Ata | Tta | 21 | 2 | 0.0952381 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249L | I3512L | nonsyn | AtA | CtC | 21 | 1 | 0.047619 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249R | I3512R | nonsyn | aTa | aGa | 12 | 12 | 1 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249M | I3512M | nonsyn | atA | atG | 8 | 8 | 1 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249I | I3512I | syn | atA | atT | 5 | 3 | 0.6 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249I | I3512I | syn | atA | atC | 5 | 2 | 0.4 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249del2 | I3512del2 | del | ATa | --a | 2 | 2 | 1 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249X | I3512X | nonsyn | ATa | TAa | 1 | 1 | 1 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249A | I3512A | nonsyn | ATa | GCa | 1 | 1 | 1 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249S | I3512S | nonsyn | aTA | aGC | 1 | 1 | 1 | 10799-10801 |
| ORF1ab/nsp5A-B | 249 | I249K | I3512K | nonsyn | aTa | aAa | 1 | 1 | 1 | 10799-10801 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 461 | 461 | All | 0.000088 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 267 | 267 | AY.4 | 0.000416 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 193 | 193 | All | 0.000037 |
| ORF1ab/nsp5A-B | 249 | I249del1 | aTa | a-a | 79 | 82 | All | 0.000015 |
| ORF1ab/nsp5A-B | 249 | I249del1 | atA | at- | 3 | 82 | All | 0.000001 |
| ORF1ab/nsp5A-B | 249 | I249del1 | aTa | a-a | 66 | 66 | B.1.1.7 | 0.000059 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 51 | 51 | B.1.445 | 0.6 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 49 | 49 | All | 0.000009 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 32 | 32 | AY.39 | 0.000791 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 24 | 24 | AY.4 | 0.000037 |
| ORF1ab/nsp5A-B | 249 | I249L | Ata | Cta | 18 | 21 | All | 0.000003 |
| ORF1ab/nsp5A-B | 249 | I249L | Ata | Tta | 2 | 21 | All | 0 |
| ORF1ab/nsp5A-B | 249 | I249L | AtA | CtC | 1 | 21 | All | 0 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 21 | 21 | C.37 | 0.002437 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 17 | 17 | B.1.1.7 | 0.000015 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 15 | 15 | AY.103 | 0.000093 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 15 | 15 | AY.43 | 0.000066 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 15 | 15 | B.1.617.2 | 0.000056 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 13 | 13 | AY.39 | 0.000321 |
| ORF1ab/nsp5A-B | 249 | I249R | aTa | aGa | 12 | 12 | All | 0.000002 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 12 | 12 | B.1.2 | 0.000106 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 12 | 12 | B.1.258.16 | 0.01964 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 12 | 12 | B.1.617.2 | 0.000045 |
| ORF1ab/nsp5A-B | 249 | I249R | aTa | aGa | 10 | 10 | B.1.1.519 | 0.000397 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 9 | 9 | AY.80 | 0.010158 |
| ORF1ab/nsp5A-B | 249 | I249M | atA | atG | 8 | 8 | All | 0.000002 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 8 | 8 | AY.43 | 0.000035 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 8 | 8 | AY.9.2 | 0.000294 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 8 | 8 | B.1 | 0.000073 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 7 | 7 | B.1.311 | 0.001922 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 6 | 6 | AY.44 | 0.000037 |
| ORF1ab/nsp5A-B | 249 | I249I | atA | atT | 3 | 5 | All | 0.000001 |
| ORF1ab/nsp5A-B | 249 | I249I | atA | atC | 2 | 5 | All | 0 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 5 | 5 | AY.25 | 0.00003 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 5 | 5 | B.1.1.7 | 0.000004 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 5 | 5 | B.1.429 | 0.000118 |
| ORF1ab/nsp5A-B | 249 | I249L | Ata | Cta | 5 | 5 | B.1.565 | 0.004052 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 4 | 4 | 0.222222 | |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 4 | 4 | AY.3 | 0.00004 |
| ORF1ab/nsp5A-B | 249 | I249L | Ata | Cta | 4 | 4 | AY.4 | 0.000006 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 4 | 4 | AY.46 | 0.000416 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 4 | 4 | B.1.565 | 0.003241 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 4 | 4 | B.1.600 | 0.023392 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 3 | 3 | AY.102 | 0.00008 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 3 | 3 | AY.118 | 0.000188 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 3 | 3 | AY.25 | 0.000018 |
| ORF1ab/nsp5A-B | 249 | I249L | Ata | Cta | 3 | 3 | B.1.1.37 | 0.000579 |
| ORF1ab/nsp5A-B | 249 | I249del1 | aTa | a-a | 3 | 3 | B.1.177.82 | 0.001432 |
| ORF1ab/nsp5A-B | 249 | I249del1 | aTa | a-a | 3 | 3 | B.1.351 | 0.000089 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 3 | 3 | P.1 | 0.000047 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 2 | 2 | 0.111111 | |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 2 | 2 | A.2.5 | 0.000998 |
| ORF1ab/nsp5A-B | 249 | I249del2 | ATa | --a | 2 | 2 | All | 0 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 2 | 2 | AY.100 | 0.000092 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 2 | 2 | AY.102 | 0.000053 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 2 | 2 | AY.103 | 0.000012 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 2 | 2 | AY.120 | 0.000074 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 2 | 2 | AY.29 | 0.000032 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 2 | 2 | AY.3 | 0.00002 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 2 | 2 | AY.4 | 0.000003 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 2 | 2 | AY.4.5 | 0.000215 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 2 | 2 | AY.42 | 0.00008 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 2 | 2 | AY.43 | 0.000009 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 2 | 2 | AY.46.4 | 0.000329 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 2 | 2 | AY.5 | 0.000041 |
| ORF1ab/nsp5A-B | 249 | I249del1 | aTa | a-a | 2 | 2 | AY.52 | 0.001629 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 2 | 2 | AY.77 | 0.002255 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 2 | 2 | AY.9 | 0.000135 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 2 | 2 | B.1.1 | 0.000036 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 2 | 2 | B.1.1 | 0.000036 |
| ORF1ab/nsp5A-B | 249 | I249L | Ata | Cta | 2 | 2 | B.1.1.7 | 0.000002 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 2 | 2 | B.1.1.7 | 0.000002 |
| ORF1ab/nsp5A-B | 249 | I249I | atA | atT | 2 | 2 | B.1.12 | 0.016 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 2 | 2 | B.1.160 | 0.000062 |
| ORF1ab/nsp5A-B | 249 | I249del1 | aTa | a-a | 2 | 2 | B.1.160 | 0.000062 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 2 | 2 | B.1.177 | 0.000026 |
| ORF1ab/nsp5A-B | 249 | I249I | atA | atC | 2 | 2 | B.1.177.81 | 0.000379 |
| ORF1ab/nsp5A-B | 249 | I249M | atA | atG | 2 | 2 | B.1.243 | 0.000139 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 2 | 2 | B.1.243 | 0.000139 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 2 | 2 | B.1.36.8 | 0.002 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 2 | 2 | B.1.369 | 0.00057 |
| ORF1ab/nsp5A-B | 249 | I249L | Ata | Cta | 2 | 2 | B.1.617.2 | 0.000008 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | AE.3 | 0.032258 |
| ORF1ab/nsp5A-B | 249 | I249S | aTA | aGC | 1 | 1 | All | 0 |
| ORF1ab/nsp5A-B | 249 | I249A | ATa | GCa | 1 | 1 | All | 0 |
| ORF1ab/nsp5A-B | 249 | I249K | aTa | aAa | 1 | 1 | All | 0 |
| ORF1ab/nsp5A-B | 249 | I249X | ATa | TAa | 1 | 1 | All | 0 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | AP.1 | 0.001502 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | AY.110 | 0.000113 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | AY.117 | 0.000085 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | AY.117 | 0.000085 |
| ORF1ab/nsp5A-B | 249 | I249M | atA | atG | 1 | 1 | AY.16 | 0.00038 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | AY.20 | 0.000039 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | AY.20 | 0.000039 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | AY.25 | 0.000006 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | AY.26 | 0.000028 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | AY.27 | 0.000065 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | AY.34 | 0.000097 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | AY.36 | 0.000148 |
| ORF1ab/nsp5A-B | 249 | I249del2 | ATa | --a | 1 | 1 | AY.36 | 0.000148 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | AY.38 | 0.000499 |
| ORF1ab/nsp5A-B | 249 | I249L | Ata | Cta | 1 | 1 | AY.39 | 0.000025 |
| ORF1ab/nsp5A-B | 249 | I249I | atA | atT | 1 | 1 | AY.4 | 0.000002 |
| ORF1ab/nsp5A-B | 249 | I249L | AtA | CtC | 1 | 1 | AY.44 | 0.000006 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | AY.44 | 0.000006 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | AY.45 | 0.000122 |
| ORF1ab/nsp5A-B | 249 | I249L | Ata | Cta | 1 | 1 | AY.45 | 0.000122 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | AY.46 | 0.000104 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | AY.46.4 | 0.000165 |
| ORF1ab/nsp5A-B | 249 | I249M | atA | atG | 1 | 1 | AY.46.6 | 0.000072 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | AY.54 | 0.000095 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | AY.6 | 0.000041 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | AY.6 | 0.000041 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | AY.6 | 0.000041 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | AY.60 | 0.000938 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | AY.61 | 0.000105 |
| ORF1ab/nsp5A-B | 249 | I249S | aTA | aGC | 1 | 1 | AY.67 | 0.000464 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | AY.7.1 | 0.000113 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | AY.81 | 0.001992 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | AY.9 | 0.000068 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | AY.98.1 | 0.000048 |
| ORF1ab/nsp5A-B | 249 | I249L | Ata | Tta | 1 | 1 | AY.99 | 0.001049 |
| ORF1ab/nsp5A-B | 249 | I249X | ATa | TAa | 1 | 1 | AY.99 | 0.001049 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | B | 0.000128 |
| ORF1ab/nsp5A-B | 249 | I249del1 | atA | at- | 1 | 1 | B | 0.000128 |
| ORF1ab/nsp5A-B | 249 | I249M | atA | atG | 1 | 1 | B.1 | 0.000009 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | B.1 | 0.000009 |
| ORF1ab/nsp5A-B | 249 | I249A | ATa | GCa | 1 | 1 | B.1.1 | 0.000018 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | B.1.1 | 0.000018 |
| ORF1ab/nsp5A-B | 249 | I249R | aTa | aGa | 1 | 1 | B.1.1 | 0.000018 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | B.1.1.1 | 0.000327 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | B.1.1.176 | 0.000439 |
| ORF1ab/nsp5A-B | 249 | I249M | atA | atG | 1 | 1 | B.1.1.229 | 0.005747 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | B.1.1.25 | 0.000569 |
| ORF1ab/nsp5A-B | 249 | I249M | atA | atG | 1 | 1 | B.1.1.284 | 0.000107 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | B.1.1.316 | 0.000925 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | B.1.1.398 | 0.003226 |
| ORF1ab/nsp5A-B | 249 | I249del2 | ATa | --a | 1 | 1 | B.1.1.7 | 0.000001 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | B.1.1.98 | 0.018519 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | B.1.177 | 0.000013 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | B.1.177.16 | 0.000664 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | B.1.177.21 | 0.000076 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
| ORF1ab/nsp5A-B | 249 | I249del1 | aTa | a-a | 1 | 1 | B.1.177.6 | 0.000977 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | B.1.177.68 | 0.015152 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | B.1.177.87 | 0.000728 |
| ORF1ab/nsp5A-B | 249 | I249R | aTa | aGa | 1 | 1 | B.1.2 | 0.000009 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | B.1.2 | 0.000009 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | B.1.23 | 0.006061 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | B.1.258 | 0.000067 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | B.1.258 | 0.000067 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | B.1.258 | 0.000067 |
| ORF1ab/nsp5A-B | 249 | I249K | aTa | aAa | 1 | 1 | B.1.258.17 | 0.000104 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | B.1.351.5 | 0.0006 |
| ORF1ab/nsp5A-B | 249 | I249del1 | aTa | a-a | 1 | 1 | B.1.36.1 | 0.00114 |
| ORF1ab/nsp5A-B | 249 | I249del1 | atA | at- | 1 | 1 | B.1.362 | 0.001541 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | B.1.409 | 0.000781 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | B.1.436 | 0.001029 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | B.1.596 | 0.000087 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
| ORF1ab/nsp5A-B | 249 | I249M | atA | atG | 1 | 1 | B.1.617.2 | 0.000004 |
| ORF1ab/nsp5A-B | 249 | I249del1 | atA | at- | 1 | 1 | B.55 | 0.00295 |
| ORF1ab/nsp5A-B | 249 | I249V | Ata | Gta | 1 | 1 | D.2 | 0.000075 |
| ORF1ab/nsp5A-B | 249 | I249T | aTa | aCa | 1 | 1 | L.2 | 0.011364 |
| ORF1ab/nsp5A-B | 249 | I249del | ATA | --- | 1 | 1 | N.4 | 0.004255 |
| ORF1ab/nsp5A-B | 249 | I249L | Ata | Tta | 1 | 1 | P.1.14 | 0.000048 |
| ORF1ab/nsp5A-B | 249 | I249del1 | aTa | a-a | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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