CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 248

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B248D248DD3511DsyngaCgaT31173117110796-10798
ORF1ab/nsp5A-B248D248ED3511EnonsyngaCgaA7737530.97412710796-10798
ORF1ab/nsp5A-B248D248ED3511EnonsyngaCgaG773200.025873210796-10798
ORF1ab/nsp5A-B248D248delD3511deldelGAC---5252110796-10798
ORF1ab/nsp5A-B248D248YD3511YnonsynGacTac4242110796-10798
ORF1ab/nsp5A-B248D248ND3511NnonsynGacAac36340.94444410796-10798
ORF1ab/nsp5A-B248D248ND3511NnonsynGaCAaT3620.055555610796-10798
ORF1ab/nsp5A-B248D248AD3511AnonsyngAcgCc16150.937510796-10798
ORF1ab/nsp5A-B248D248AD3511AnonsyngACgCT1610.062510796-10798
ORF1ab/nsp5A-B248D248GD3511GnonsyngAcgGc1515110796-10798
ORF1ab/nsp5A-B248D248HD3511HnonsynGacCac77110796-10798
ORF1ab/nsp5A-B248D248VD3511VnonsyngAcgTc66110796-10798
ORF1ab/nsp5A-B248D248LD3511LnonsynGAcCTc11110796-10798
ORF1ab/nsp5A-B248D248del2D3511del2delGAc--c11110796-10798
ORF1ab/nsp5A-B248D248del1D3511del1delGac-ac11110796-10798

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B248D248DgaCgaT31173117All0.000596
ORF1ab/nsp5A-B248D248DgaCgaT20832083B.1.5610.826915
ORF1ab/nsp5A-B248D248EgaCgaA753773All0.000144
ORF1ab/nsp5A-B248D248EgaCgaG20773All0.000004
ORF1ab/nsp5A-B248D248EgaCgaA747747B.1.930.697479
ORF1ab/nsp5A-B248D248DgaCgaT197197B.1.1.70.000176
ORF1ab/nsp5A-B248D248DgaCgaT105105AY.40.000163
ORF1ab/nsp5A-B248D248DgaCgaT104104B.10.000953
ORF1ab/nsp5A-B248D248DgaCgaT8282AY.260.002321
ORF1ab/nsp5A-B248D248DgaCgaT6868B.1.5690.985507
ORF1ab/nsp5A-B248D248delGAC---5252All0.00001
ORF1ab/nsp5A-B248D248DgaCgaT5252B.1.20.000458
ORF1ab/nsp5A-B248D248YGacTac4242All0.000008
ORF1ab/nsp5A-B248D248NGacAac3436All0.000007
ORF1ab/nsp5A-B248D248NGaCAaT236All0
ORF1ab/nsp5A-B248D248DgaCgaT3434AY.1030.000211
ORF1ab/nsp5A-B248D248DgaCgaT2727B.1.617.20.000102
ORF1ab/nsp5A-B248D248DgaCgaT2525AY.30.000249
ORF1ab/nsp5A-B248D248DgaCgaT2323P.1.140.001099
ORF1ab/nsp5A-B248D248DgaCgaT2121AY.250.000126
ORF1ab/nsp5A-B248D248delGAC---1818B.1.1.70.000016
ORF1ab/nsp5A-B248D248DgaCgaT1818B.1.1770.000237
ORF1ab/nsp5A-B248D248AgAcgCc1516All0.000003
ORF1ab/nsp5A-B248D248AgACgCT116All0
ORF1ab/nsp5A-B248D248DgaCgaT1616B.1.6290.213333
ORF1ab/nsp5A-B248D248GgAcgGc1515All0.000003
ORF1ab/nsp5A-B248D248EgaCgaG1013B.1.1.70.000009
ORF1ab/nsp5A-B248D248EgaCgaA313B.1.1.70.000003
ORF1ab/nsp5A-B248D248DgaCgaT1212B.1.10.000218
ORF1ab/nsp5A-B248D248DgaCgaT1212B.1.1600.000374
ORF1ab/nsp5A-B248D248DgaCgaT1212B.1.2400.002587
ORF1ab/nsp5A-B248D248DgaCgaT1111AY.430.000049
ORF1ab/nsp5A-B248D248DgaCgaT1111B.1.1.5190.000437
ORF1ab/nsp5A-B248D248NGacAac1111B.1.1.70.00001
ORF1ab/nsp5A-B248D248YGacTac1111D.20.000825
ORF1ab/nsp5A-B248D248DgaCgaT99AY.200.00035
ORF1ab/nsp5A-B248D248YGacTac99B.1.438.10.000965
ORF1ab/nsp5A-B248D248EgaCgaG99B.1.5250.001018
ORF1ab/nsp5A-B248D248DgaCgaT99P.10.000142
ORF1ab/nsp5A-B248D248AgAcgCc78B.1.10.000127
ORF1ab/nsp5A-B248D248AgACgCT18B.1.10.000018
ORF1ab/nsp5A-B248D248DgaCgaT88B.1.6300.041885
ORF1ab/nsp5A-B248D248HGacCac77All0.000001
ORF1ab/nsp5A-B248D248DgaCgaT77AY.440.000043
ORF1ab/nsp5A-B248D248VgAcgTc66All0.000001
ORF1ab/nsp5A-B248D248DgaCgaT66AY.230.000418
ORF1ab/nsp5A-B248D248DgaCgaT66AY.460.000624
ORF1ab/nsp5A-B248D248DgaCgaT66B.1.177.810.001136
ORF1ab/nsp5A-B248D248DgaCgaT66B.1.4290.000141
ORF1ab/nsp5A-B248D248HGacCac66B.1.4290.000141
ORF1ab/nsp5A-B248D248DgaCgaT55AY.1000.00023
ORF1ab/nsp5A-B248D248DgaCgaT55AY.1110.000916
ORF1ab/nsp5A-B248D248NGacAac55AY.430.000022
ORF1ab/nsp5A-B248D248DgaCgaT55B.1.2430.000348
ORF1ab/nsp5A-B248D248DgaCgaT55B.1.258.170.00052
ORF1ab/nsp5A-B248D248DgaCgaT55B.1.3510.000149
ORF1ab/nsp5A-B248D248DgaCgaT55B.1.36.290.002587
ORF1ab/nsp5A-B248D248DgaCgaT55B.1.5820.002453
ORF1ab/nsp5A-B248D248delGAC---440.222222
ORF1ab/nsp5A-B248D248YGacTac44AY.250.000024
ORF1ab/nsp5A-B248D248DgaCgaT44B.1.1.2220.000816
ORF1ab/nsp5A-B248D248DgaCgaT44B.1.1.3060.001754
ORF1ab/nsp5A-B248D248DgaCgaT44B.1.6180.016129
ORF1ab/nsp5A-B248D248NGacAac33AE.80.001467
ORF1ab/nsp5A-B248D248DgaCgaT33AY.1020.00008
ORF1ab/nsp5A-B248D248DgaCgaT33AY.1200.000112
ORF1ab/nsp5A-B248D248GgAcgGc33AY.250.000018
ORF1ab/nsp5A-B248D248GgAcgGc33AY.30.00003
ORF1ab/nsp5A-B248D248NGacAac33AY.30.00003
ORF1ab/nsp5A-B248D248GgAcgGc33AY.40.000005
ORF1ab/nsp5A-B248D248DgaCgaT33AY.470.000093
ORF1ab/nsp5A-B248D248AgAcgCc33B.1.4290.000071
ORF1ab/nsp5A-B248D248DgaCgaT33B.1.6210.000266
ORF1ab/nsp5A-B248D248DgaCgaT33B.1.760.034091
ORF1ab/nsp5A-B248D248DgaCgaT22AY.1060.00067
ORF1ab/nsp5A-B248D248DgaCgaT22AY.1170.000169
ORF1ab/nsp5A-B248D248DgaCgaT22AY.130.000322
ORF1ab/nsp5A-B248D248AgAcgCc22AY.250.000012
ORF1ab/nsp5A-B248D248delGAC---22AY.360.000296
ORF1ab/nsp5A-B248D248delGAC---22AY.40.000003
ORF1ab/nsp5A-B248D248NGacAac22AY.40.000003
ORF1ab/nsp5A-B248D248delGAC---22AY.4.50.000215
ORF1ab/nsp5A-B248D248delGAC---22AY.430.000009
ORF1ab/nsp5A-B248D248DgaCgaT22AY.610.00021
ORF1ab/nsp5A-B248D248DgaCgaT22AY.880.001768
ORF1ab/nsp5A-B248D248delGAC---22AY.90.000135
ORF1ab/nsp5A-B248D248EgaCgaA22B.10.000018
ORF1ab/nsp5A-B248D248delGAC---22B.1.10.000036
ORF1ab/nsp5A-B248D248DgaCgaT22B.1.1.2070.002364
ORF1ab/nsp5A-B248D248NGacAac22B.1.1.330.000842
ORF1ab/nsp5A-B248D248AgAcgCc22B.1.1.70.000002
ORF1ab/nsp5A-B248D248YGacTac22B.1.1.70.000002
ORF1ab/nsp5A-B248D248YGacTac22B.1.110.30.001437
ORF1ab/nsp5A-B248D248DgaCgaT22B.1.1390.001466
ORF1ab/nsp5A-B248D248delGAC---22B.1.1770.000026
ORF1ab/nsp5A-B248D248DgaCgaT22B.1.177.440.001038
ORF1ab/nsp5A-B248D248DgaCgaT22B.1.2210.000142
ORF1ab/nsp5A-B248D248DgaCgaT22B.1.2320.001075
ORF1ab/nsp5A-B248D248DgaCgaT22B.1.3110.000549
ORF1ab/nsp5A-B248D248DgaCgaT22B.1.3690.00057
ORF1ab/nsp5A-B248D248DgaCgaT22B.1.466.20.000782
ORF1ab/nsp5A-B248D248GgAcgGc22B.1.5960.000174
ORF1ab/nsp5A-B248D248DgaCgaT22B.310.007463
ORF1ab/nsp5A-B248D248VgAcgTc11A0.000387
ORF1ab/nsp5A-B248D248DgaCgaT11A.2.50.000499
ORF1ab/nsp5A-B248D248DgaCgaT11A.30.002096
ORF1ab/nsp5A-B248D248del1Gac-ac11All0
ORF1ab/nsp5A-B248D248LGAcCTc11All0
ORF1ab/nsp5A-B248D248del2GAc--c11All0
ORF1ab/nsp5A-B248D248YGacTac11AY.1030.000006
ORF1ab/nsp5A-B248D248NGacAac11AY.1030.000006
ORF1ab/nsp5A-B248D248YGacTac11AY.1110.000183
ORF1ab/nsp5A-B248D248DgaCgaT11AY.1140.000231
ORF1ab/nsp5A-B248D248DgaCgaT11AY.1180.000063
ORF1ab/nsp5A-B248D248DgaCgaT11AY.1190.000035
ORF1ab/nsp5A-B248D248NGacAac11AY.1210.000135
ORF1ab/nsp5A-B248D248DgaCgaT11AY.140.000088
ORF1ab/nsp5A-B248D248YGacTac11AY.170.008197
ORF1ab/nsp5A-B248D248delGAC---11AY.250.000006
ORF1ab/nsp5A-B248D248DgaCgaT11AY.290.000016
ORF1ab/nsp5A-B248D248DgaCgaT11AY.3.10.000085
ORF1ab/nsp5A-B248D248DgaCgaT11AY.330.000067
ORF1ab/nsp5A-B248D248DgaCgaT11AY.340.000097
ORF1ab/nsp5A-B248D248DgaCgaT11AY.350.000233
ORF1ab/nsp5A-B248D248DgaCgaT11AY.390.000025
ORF1ab/nsp5A-B248D248YGacTac11AY.40.000002
ORF1ab/nsp5A-B248D248AgAcgCc11AY.40.000002
ORF1ab/nsp5A-B248D248YGacTac11AY.4.20.000022
ORF1ab/nsp5A-B248D248DgaCgaT11AY.4.20.000022
ORF1ab/nsp5A-B248D248DgaCgaT11AY.420.00004
ORF1ab/nsp5A-B248D248NGacAac11AY.420.00004
ORF1ab/nsp5A-B248D248GgAcgGc11AY.430.000004
ORF1ab/nsp5A-B248D248delGAC---11AY.440.000006
ORF1ab/nsp5A-B248D248NGaCAaT11AY.440.000006
ORF1ab/nsp5A-B248D248GgAcgGc11AY.440.000006
ORF1ab/nsp5A-B248D248YGacTac11AY.440.000006
ORF1ab/nsp5A-B248D248EgaCgaA11AY.450.000122
ORF1ab/nsp5A-B248D248NGacAac11AY.470.000031
ORF1ab/nsp5A-B248D248GgAcgGc11AY.50.000021
ORF1ab/nsp5A-B248D248DgaCgaT11AY.50.000021
ORF1ab/nsp5A-B248D248delGAC---11AY.540.000095
ORF1ab/nsp5A-B248D248YGacTac11AY.540.000095
ORF1ab/nsp5A-B248D248DgaCgaT11AY.540.000095
ORF1ab/nsp5A-B248D248DgaCgaT11AY.580.000907
ORF1ab/nsp5A-B248D248delGAC---11AY.60.000041
ORF1ab/nsp5A-B248D248delGAC---11AY.600.000938
ORF1ab/nsp5A-B248D248DgaCgaT11AY.650.000533
ORF1ab/nsp5A-B248D248DgaCgaT11AY.75.10.00018
ORF1ab/nsp5A-B248D248delGAC---11AY.810.001992
ORF1ab/nsp5A-B248D248DgaCgaT11AY.840.000437
ORF1ab/nsp5A-B248D248HGacCac11AY.90.000068
ORF1ab/nsp5A-B248D248DgaCgaT11AY.9.20.000037
ORF1ab/nsp5A-B248D248DgaCgaT11AY.920.000287
ORF1ab/nsp5A-B248D248DgaCgaT11AY.950.000761
ORF1ab/nsp5A-B248D248LGAcCTc11AY.990.001049
ORF1ab/nsp5A-B248D248DgaCgaT11AY.99.20.000092
ORF1ab/nsp5A-B248D248YGacTac11B0.000128
ORF1ab/nsp5A-B248D248YGacTac11B.10.000009
ORF1ab/nsp5A-B248D248delGAC---11B.10.000009
ORF1ab/nsp5A-B248D248NGaCAaT11B.10.000009
ORF1ab/nsp5A-B248D248VgAcgTc11B.10.000009
ORF1ab/nsp5A-B248D248del1Gac-ac11B.10.000009
ORF1ab/nsp5A-B248D248YGacTac11B.1.10.000018
ORF1ab/nsp5A-B248D248GgAcgGc11B.1.1.2070.001182
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.1.250.000569
ORF1ab/nsp5A-B248D248NGacAac11B.1.1.2850.006536
ORF1ab/nsp5A-B248D248delGAC---11B.1.1.3110.000358
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.1.3820.035714
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.1.4090.002833
ORF1ab/nsp5A-B248D248VgAcgTc11B.1.1.5190.00004
ORF1ab/nsp5A-B248D248VgAcgTc11B.1.1.70.000001
ORF1ab/nsp5A-B248D248delGAC---11B.1.177.160.000664
ORF1ab/nsp5A-B248D248delGAC---11B.1.177.210.000076
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.177.300.002513
ORF1ab/nsp5A-B248D248delGAC---11B.1.177.40.000211
ORF1ab/nsp5A-B248D248VgAcgTc11B.1.177.430.001477
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.177.730.000566
ORF1ab/nsp5A-B248D248NGacAac11B.1.177.740.015152
ORF1ab/nsp5A-B248D248delGAC---11B.1.177.760.002494
ORF1ab/nsp5A-B248D248delGAC---11B.1.177.870.000728
ORF1ab/nsp5A-B248D248NGacAac11B.1.20.000009
ORF1ab/nsp5A-B248D248VgAcgTc11B.1.20.000009
ORF1ab/nsp5A-B248D248del2GAc--c11B.1.2180.005155
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.2220.001692
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.2340.000132
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.2470.014925
ORF1ab/nsp5A-B248D248delGAC---11B.1.2580.000067
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.258.110.000396
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.258.220.002667
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.3150.006061
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.3480.018182
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.36.80.001
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.3700.008
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.3960.000706
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.4270.00005
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.4600.017857
ORF1ab/nsp5A-B248D248YGacTac11B.1.4700.001404
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.5260.000024
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.5550.022222
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.5650.00081
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.5750.000303
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.5960.000087
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.6090.000479
ORF1ab/nsp5A-B248D248DgaCgaT11B.1.6100.003546
ORF1ab/nsp5A-B248D248YGacTac11B.1.617.20.000004
ORF1ab/nsp5A-B248D248delGAC---11B.1.617.20.000004
ORF1ab/nsp5A-B248D248EgaCgaG11B.1.6360.006711
ORF1ab/nsp5A-B248D248DgaCgaT11B.30.000831
ORF1ab/nsp5A-B248D248YGacTac11B.40.002208
ORF1ab/nsp5A-B248D248NGacAac11B.400.000364
ORF1ab/nsp5A-B248D248DgaCgaT11C.370.000116
ORF1ab/nsp5A-B248D248DgaCgaT11D.20.000075
ORF1ab/nsp5A-B248D248delGAC---11N.40.004255
ORF1ab/nsp5A-B248D248YGacTac11P.1.10.000318
ORF1ab/nsp5A-B248D248DgaCgaT11P.1.120.000484
ORF1ab/nsp5A-B248D248DgaCgaT11P.1.150.000232
ORF1ab/nsp5A-B248D248DgaCgaT11P.1.70.000319
ORF1ab/nsp5A-B248D248DgaCgaT11P.20.000187
ORF1ab/nsp5A-B248D248DgaCgaT11P.30.001595
ORF1ab/nsp5A-B248D248DgaCgaT11Q.30.000145