CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 248

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp5A-B	248	D248D	D3511D	syn	gaC	gaT	3117	3117	1	10796-10798
ORF1ab/nsp5A-B	248	D248E	D3511E	nonsyn	gaC	gaA	773	753	0.974127	10796-10798
ORF1ab/nsp5A-B	248	D248E	D3511E	nonsyn	gaC	gaG	773	20	0.0258732	10796-10798
ORF1ab/nsp5A-B	248	D248del	D3511del	del	GAC	---	52	52	1	10796-10798
ORF1ab/nsp5A-B	248	D248Y	D3511Y	nonsyn	Gac	Tac	42	42	1	10796-10798
ORF1ab/nsp5A-B	248	D248N	D3511N	nonsyn	Gac	Aac	36	34	0.944444	10796-10798
ORF1ab/nsp5A-B	248	D248N	D3511N	nonsyn	GaC	AaT	36	2	0.0555556	10796-10798
ORF1ab/nsp5A-B	248	D248A	D3511A	nonsyn	gAc	gCc	16	15	0.9375	10796-10798
ORF1ab/nsp5A-B	248	D248A	D3511A	nonsyn	gAC	gCT	16	1	0.0625	10796-10798
ORF1ab/nsp5A-B	248	D248G	D3511G	nonsyn	gAc	gGc	15	15	1	10796-10798
ORF1ab/nsp5A-B	248	D248H	D3511H	nonsyn	Gac	Cac	7	7	1	10796-10798
ORF1ab/nsp5A-B	248	D248V	D3511V	nonsyn	gAc	gTc	6	6	1	10796-10798
ORF1ab/nsp5A-B	248	D248L	D3511L	nonsyn	GAc	CTc	1	1	1	10796-10798
ORF1ab/nsp5A-B	248	D248del2	D3511del2	del	GAc	--c	1	1	1	10796-10798
ORF1ab/nsp5A-B	248	D248del1	D3511del1	del	Gac	-ac	1	1	1	10796-10798

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	3117	3117	All	0.000596
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	2083	2083	B.1.561	0.826915
ORF1ab/nsp5A-B	248	D248E	gaC	gaA	753	773	All	0.000144
ORF1ab/nsp5A-B	248	D248E	gaC	gaG	20	773	All	0.000004
ORF1ab/nsp5A-B	248	D248E	gaC	gaA	747	747	B.1.93	0.697479
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	197	197	B.1.1.7	0.000176
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	105	105	AY.4	0.000163
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	104	104	B.1	0.000953
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	82	82	AY.26	0.002321
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	68	68	B.1.569	0.985507
ORF1ab/nsp5A-B	248	D248del	GAC	---	52	52	All	0.00001
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	52	52	B.1.2	0.000458
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	42	42	All	0.000008
ORF1ab/nsp5A-B	248	D248N	Gac	Aac	34	36	All	0.000007
ORF1ab/nsp5A-B	248	D248N	GaC	AaT	2	36	All	0
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	34	34	AY.103	0.000211
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	27	27	B.1.617.2	0.000102
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	25	25	AY.3	0.000249
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	23	23	P.1.14	0.001099
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	21	21	AY.25	0.000126
ORF1ab/nsp5A-B	248	D248del	GAC	---	18	18	B.1.1.7	0.000016
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	18	18	B.1.177	0.000237
ORF1ab/nsp5A-B	248	D248A	gAc	gCc	15	16	All	0.000003
ORF1ab/nsp5A-B	248	D248A	gAC	gCT	1	16	All	0
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	16	16	B.1.629	0.213333
ORF1ab/nsp5A-B	248	D248G	gAc	gGc	15	15	All	0.000003
ORF1ab/nsp5A-B	248	D248E	gaC	gaG	10	13	B.1.1.7	0.000009
ORF1ab/nsp5A-B	248	D248E	gaC	gaA	3	13	B.1.1.7	0.000003
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	12	12	B.1.1	0.000218
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	12	12	B.1.160	0.000374
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	12	12	B.1.240	0.002587
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	11	11	AY.43	0.000049
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	11	11	B.1.1.519	0.000437
ORF1ab/nsp5A-B	248	D248N	Gac	Aac	11	11	B.1.1.7	0.00001
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	11	11	D.2	0.000825
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	9	9	AY.20	0.00035
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	9	9	B.1.438.1	0.000965
ORF1ab/nsp5A-B	248	D248E	gaC	gaG	9	9	B.1.525	0.001018
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	9	9	P.1	0.000142
ORF1ab/nsp5A-B	248	D248A	gAc	gCc	7	8	B.1.1	0.000127
ORF1ab/nsp5A-B	248	D248A	gAC	gCT	1	8	B.1.1	0.000018
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	8	8	B.1.630	0.041885
ORF1ab/nsp5A-B	248	D248H	Gac	Cac	7	7	All	0.000001
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	7	7	AY.44	0.000043
ORF1ab/nsp5A-B	248	D248V	gAc	gTc	6	6	All	0.000001
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	6	6	AY.23	0.000418
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	6	6	AY.46	0.000624
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	6	6	B.1.177.81	0.001136
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	6	6	B.1.429	0.000141
ORF1ab/nsp5A-B	248	D248H	Gac	Cac	6	6	B.1.429	0.000141
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	5	5	AY.100	0.00023
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	5	5	AY.111	0.000916
ORF1ab/nsp5A-B	248	D248N	Gac	Aac	5	5	AY.43	0.000022
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	5	5	B.1.243	0.000348
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	5	5	B.1.258.17	0.00052
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	5	5	B.1.351	0.000149
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	5	5	B.1.36.29	0.002587
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	5	5	B.1.582	0.002453
ORF1ab/nsp5A-B	248	D248del	GAC	---	4	4		0.222222
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	4	4	AY.25	0.000024
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	4	4	B.1.1.222	0.000816
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	4	4	B.1.1.306	0.001754
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	4	4	B.1.618	0.016129
ORF1ab/nsp5A-B	248	D248N	Gac	Aac	3	3	AE.8	0.001467
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	3	3	AY.102	0.00008
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	3	3	AY.120	0.000112
ORF1ab/nsp5A-B	248	D248G	gAc	gGc	3	3	AY.25	0.000018
ORF1ab/nsp5A-B	248	D248G	gAc	gGc	3	3	AY.3	0.00003
ORF1ab/nsp5A-B	248	D248N	Gac	Aac	3	3	AY.3	0.00003
ORF1ab/nsp5A-B	248	D248G	gAc	gGc	3	3	AY.4	0.000005
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	3	3	AY.47	0.000093
ORF1ab/nsp5A-B	248	D248A	gAc	gCc	3	3	B.1.429	0.000071
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	3	3	B.1.621	0.000266
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	3	3	B.1.76	0.034091
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	2	2	AY.106	0.00067
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	2	2	AY.117	0.000169
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	2	2	AY.13	0.000322
ORF1ab/nsp5A-B	248	D248A	gAc	gCc	2	2	AY.25	0.000012
ORF1ab/nsp5A-B	248	D248del	GAC	---	2	2	AY.36	0.000296
ORF1ab/nsp5A-B	248	D248del	GAC	---	2	2	AY.4	0.000003
ORF1ab/nsp5A-B	248	D248N	Gac	Aac	2	2	AY.4	0.000003
ORF1ab/nsp5A-B	248	D248del	GAC	---	2	2	AY.4.5	0.000215
ORF1ab/nsp5A-B	248	D248del	GAC	---	2	2	AY.43	0.000009
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	2	2	AY.61	0.00021
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	2	2	AY.88	0.001768
ORF1ab/nsp5A-B	248	D248del	GAC	---	2	2	AY.9	0.000135
ORF1ab/nsp5A-B	248	D248E	gaC	gaA	2	2	B.1	0.000018
ORF1ab/nsp5A-B	248	D248del	GAC	---	2	2	B.1.1	0.000036
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	2	2	B.1.1.207	0.002364
ORF1ab/nsp5A-B	248	D248N	Gac	Aac	2	2	B.1.1.33	0.000842
ORF1ab/nsp5A-B	248	D248A	gAc	gCc	2	2	B.1.1.7	0.000002
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	2	2	B.1.1.7	0.000002
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	2	2	B.1.110.3	0.001437
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	2	2	B.1.139	0.001466
ORF1ab/nsp5A-B	248	D248del	GAC	---	2	2	B.1.177	0.000026
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	2	2	B.1.177.44	0.001038
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	2	2	B.1.221	0.000142
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	2	2	B.1.232	0.001075
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	2	2	B.1.311	0.000549
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	2	2	B.1.369	0.00057
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	2	2	B.1.466.2	0.000782
ORF1ab/nsp5A-B	248	D248G	gAc	gGc	2	2	B.1.596	0.000174
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	2	2	B.31	0.007463
ORF1ab/nsp5A-B	248	D248V	gAc	gTc	1	1	A	0.000387
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	A.2.5	0.000499
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	A.3	0.002096
ORF1ab/nsp5A-B	248	D248del1	Gac	-ac	1	1	All	0
ORF1ab/nsp5A-B	248	D248L	GAc	CTc	1	1	All	0
ORF1ab/nsp5A-B	248	D248del2	GAc	--c	1	1	All	0
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	1	1	AY.103	0.000006
ORF1ab/nsp5A-B	248	D248N	Gac	Aac	1	1	AY.103	0.000006
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	1	1	AY.111	0.000183
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.114	0.000231
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.118	0.000063
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.119	0.000035
ORF1ab/nsp5A-B	248	D248N	Gac	Aac	1	1	AY.121	0.000135
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.14	0.000088
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	1	1	AY.17	0.008197
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	AY.25	0.000006
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.29	0.000016
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.3.1	0.000085
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.33	0.000067
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.34	0.000097
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.35	0.000233
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.39	0.000025
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	1	1	AY.4	0.000002
ORF1ab/nsp5A-B	248	D248A	gAc	gCc	1	1	AY.4	0.000002
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	1	1	AY.4.2	0.000022
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.4.2	0.000022
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.42	0.00004
ORF1ab/nsp5A-B	248	D248N	Gac	Aac	1	1	AY.42	0.00004
ORF1ab/nsp5A-B	248	D248G	gAc	gGc	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	248	D248N	GaC	AaT	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	248	D248G	gAc	gGc	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	248	D248E	gaC	gaA	1	1	AY.45	0.000122
ORF1ab/nsp5A-B	248	D248N	Gac	Aac	1	1	AY.47	0.000031
ORF1ab/nsp5A-B	248	D248G	gAc	gGc	1	1	AY.5	0.000021
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.5	0.000021
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	AY.54	0.000095
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	1	1	AY.54	0.000095
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.54	0.000095
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.58	0.000907
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	AY.6	0.000041
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	AY.60	0.000938
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.65	0.000533
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.75.1	0.00018
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	AY.81	0.001992
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.84	0.000437
ORF1ab/nsp5A-B	248	D248H	Gac	Cac	1	1	AY.9	0.000068
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.9.2	0.000037
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.92	0.000287
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.95	0.000761
ORF1ab/nsp5A-B	248	D248L	GAc	CTc	1	1	AY.99	0.001049
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	AY.99.2	0.000092
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	1	1	B	0.000128
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	1	1	B.1	0.000009
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	B.1	0.000009
ORF1ab/nsp5A-B	248	D248N	GaC	AaT	1	1	B.1	0.000009
ORF1ab/nsp5A-B	248	D248V	gAc	gTc	1	1	B.1	0.000009
ORF1ab/nsp5A-B	248	D248del1	Gac	-ac	1	1	B.1	0.000009
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	248	D248G	gAc	gGc	1	1	B.1.1.207	0.001182
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.1.25	0.000569
ORF1ab/nsp5A-B	248	D248N	Gac	Aac	1	1	B.1.1.285	0.006536
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.1.382	0.035714
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.1.409	0.002833
ORF1ab/nsp5A-B	248	D248V	gAc	gTc	1	1	B.1.1.519	0.00004
ORF1ab/nsp5A-B	248	D248V	gAc	gTc	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	B.1.177.21	0.000076
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.177.30	0.002513
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp5A-B	248	D248V	gAc	gTc	1	1	B.1.177.43	0.001477
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.177.73	0.000566
ORF1ab/nsp5A-B	248	D248N	Gac	Aac	1	1	B.1.177.74	0.015152
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	B.1.177.76	0.002494
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	B.1.177.87	0.000728
ORF1ab/nsp5A-B	248	D248N	Gac	Aac	1	1	B.1.2	0.000009
ORF1ab/nsp5A-B	248	D248V	gAc	gTc	1	1	B.1.2	0.000009
ORF1ab/nsp5A-B	248	D248del2	GAc	--c	1	1	B.1.218	0.005155
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.222	0.001692
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.234	0.000132
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.247	0.014925
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	B.1.258	0.000067
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.258.11	0.000396
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.258.22	0.002667
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.315	0.006061
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.348	0.018182
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.36.8	0.001
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.370	0.008
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.396	0.000706
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.427	0.00005
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.460	0.017857
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	1	1	B.1.470	0.001404
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.526	0.000024
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.555	0.022222
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.565	0.00081
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.575	0.000303
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.596	0.000087
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.609	0.000479
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.1.610	0.003546
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	248	D248E	gaC	gaG	1	1	B.1.636	0.006711
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	B.3	0.000831
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	1	1	B.4	0.002208
ORF1ab/nsp5A-B	248	D248N	Gac	Aac	1	1	B.40	0.000364
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	C.37	0.000116
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	D.2	0.000075
ORF1ab/nsp5A-B	248	D248del	GAC	---	1	1	N.4	0.004255
ORF1ab/nsp5A-B	248	D248Y	Gac	Tac	1	1	P.1.1	0.000318
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	P.1.12	0.000484
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	P.1.15	0.000232
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	P.1.7	0.000319
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	P.2	0.000187
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	P.3	0.001595
ORF1ab/nsp5A-B	248	D248D	gaC	gaT	1	1	Q.3	0.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.