CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 247 | V247F | V3510F | nonsyn | Gtt | Ttt | 2089 | 2089 | 1 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247I | V3510I | nonsyn | Gtt | Att | 516 | 514 | 0.996124 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247I | V3510I | nonsyn | GtT | AtA | 516 | 2 | 0.00387597 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247V | V3510V | syn | gtT | gtC | 398 | 283 | 0.711055 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247V | V3510V | syn | gtT | gtA | 398 | 106 | 0.266332 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247V | V3510V | syn | gtT | gtG | 398 | 9 | 0.0226131 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247A | V3510A | nonsyn | gTt | gCt | 82 | 82 | 1 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247del | V3510del | del | GTT | --- | 56 | 56 | 1 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247L | V3510L | nonsyn | Gtt | Ctt | 26 | 21 | 0.807692 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247L | V3510L | nonsyn | GtT | CtA | 26 | 4 | 0.153846 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247L | V3510L | nonsyn | GtT | CtC | 26 | 1 | 0.0384615 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247G | V3510G | nonsyn | gTt | gGt | 4 | 4 | 1 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247D | V3510D | nonsyn | gTt | gAt | 3 | 3 | 1 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247del1 | V3510del1 | del | GTT | AC- | 3 | 1 | 0.333333 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247del1 | V3510del1 | del | GTT | A-A | 3 | 1 | 0.333333 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247del1 | V3510del1 | del | Gtt | -tt | 3 | 1 | 0.333333 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247K | V3510K | nonsyn | GTT | AAA | 2 | 2 | 1 | 10793-10795 |
ORF1ab/nsp5A-B | 247 | V247del2 | V3510del2 | del | GTt | --t | 1 | 1 | 1 | 10793-10795 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2089 | 2089 | All | 0.0004 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 514 | 516 | All | 0.000098 |
ORF1ab/nsp5A-B | 247 | V247I | GtT | AtA | 2 | 516 | All | 0 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 487 | 487 | B.1 | 0.004461 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 450 | 450 | B.1.127 | 0.989011 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 410 | 410 | AY.103 | 0.002546 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 283 | 398 | All | 0.000054 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtA | 106 | 398 | All | 0.00002 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtG | 9 | 398 | All | 0.000002 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 199 | 199 | B.1.2 | 0.001752 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 126 | 126 | B.1.1.225 | 0.906475 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 113 | 113 | AD.2 | 0.024743 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 103 | 103 | AY.4 | 0.00016 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 82 | 82 | All | 0.000016 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtA | 77 | 78 | AY.25 | 0.000463 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 78 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 56 | 56 | All | 0.000011 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 52 | 52 | B.1.468 | 0.297143 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 47 | 47 | B.1.1.7 | 0.000042 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 45 | 45 | AY.25 | 0.000271 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 44 | 44 | B.1.1.214 | 0.00244 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 44 | 44 | B.1.617.2 | 0.000166 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 42 | 42 | AY.43 | 0.000186 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 41 | 41 | B.1.163 | 1 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 39 | 39 | AY.44 | 0.000237 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 38 | 38 | B.1.1.334 | 0.622951 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 36 | 36 | B.1.1.284 | 0.003866 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 30 | 32 | B.1.617.2 | 0.000113 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtA | 2 | 32 | B.1.617.2 | 0.000008 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 28 | 28 | AY.102 | 0.000742 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 27 | 27 | B.1.396 | 0.019054 |
ORF1ab/nsp5A-B | 247 | V247L | Gtt | Ctt | 21 | 26 | All | 0.000004 |
ORF1ab/nsp5A-B | 247 | V247L | GtT | CtA | 4 | 26 | All | 0.000001 |
ORF1ab/nsp5A-B | 247 | V247L | GtT | CtC | 1 | 26 | All | 0 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 26 | 26 | B.1.2 | 0.000229 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 25 | 25 | AY.100 | 0.00115 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 24 | 24 | B.1.637 | 0.001754 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 23 | 23 | B.1.1.7 | 0.000021 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtA | 8 | 15 | B.1.1.7 | 0.000007 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 7 | 15 | B.1.1.7 | 0.000006 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 14 | 14 | AY.9 | 0.000946 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 14 | 14 | B.1.609 | 0.006711 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 12 | 13 | B.1 | 0.00011 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtG | 1 | 13 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtA | 6 | 12 | B.1.2 | 0.000053 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 4 | 12 | B.1.2 | 0.000035 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtG | 2 | 12 | B.1.2 | 0.000018 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 8 | 8 | D.2 | 0.0006 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 7 | 7 | AY.85 | 0.00299 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 7 | 7 | B.1.280 | 0.05 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 3 | 6 | AY.4 | 0.000005 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtA | 3 | 6 | AY.4 | 0.000005 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 6 | 6 | B.1.1.170 | 0.007481 |
ORF1ab/nsp5A-B | 247 | V247L | GtT | CtA | 4 | 6 | B.1.1.7 | 0.000004 |
ORF1ab/nsp5A-B | 247 | V247L | Gtt | Ctt | 2 | 6 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 5 | 5 | AY.110 | 0.000563 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtA | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp5A-B | 247 | V247G | gTt | gGt | 4 | 4 | All | 0.000001 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 4 | 4 | B.1.177.50 | 0.018779 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 4 | 4 | B.1.551 | 0.005161 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 2 | 4 | P.1 | 0.000032 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtA | 1 | 4 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtG | 1 | 4 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 247 | V247D | gTt | gAt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp5A-B | 247 | V247del1 | GTT | AC- | 1 | 3 | All | 0 |
ORF1ab/nsp5A-B | 247 | V247del1 | Gtt | -tt | 1 | 3 | All | 0 |
ORF1ab/nsp5A-B | 247 | V247del1 | GTT | A-A | 1 | 3 | All | 0 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp5A-B | 247 | V247L | Gtt | Ctt | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtA | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 3 | 3 | B.1.160.28 | 0.008772 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 3 | 3 | B.1.22 | 0.003953 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp5A-B | 247 | V247L | Gtt | Ctt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 3 | 3 | C.37.1 | 0.007853 |
ORF1ab/nsp5A-B | 247 | V247I | GtT | AtA | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 247 | V247K | GTT | AAA | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp5A-B | 247 | V247K | GTT | AAA | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtG | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp5A-B | 247 | V247L | Gtt | Ctt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtG | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp5A-B | 247 | V247G | gTt | gGt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | B.1.1.274 | 0.010101 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtG | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp5A-B | 247 | V247L | Gtt | Ctt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp5A-B | 247 | V247del2 | GTt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp5A-B | 247 | V247L | Gtt | Ctt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 247 | V247L | Gtt | Ctt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp5A-B | 247 | V247L | Gtt | Ctt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 247 | V247L | Gtt | Ctt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 247 | V247L | GtT | CtC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 247 | V247del1 | GTT | A-A | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp5A-B | 247 | V247G | gTt | gGt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp5A-B | 247 | V247D | gTt | gAt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp5A-B | 247 | V247L | Gtt | Ctt | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtA | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp5A-B | 247 | V247D | gTt | gAt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtG | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 247 | V247del1 | GTT | AC- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp5A-B | 247 | V247L | Gtt | Ctt | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp5A-B | 247 | V247G | gTt | gGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 247 | V247del2 | GTt | --t | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.177.88 | 0.012346 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.248 | 0.029412 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp5A-B | 247 | V247D | gTt | gAt | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.513 | 0.013889 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp5A-B | 247 | V247del1 | Gtt | -tt | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp5A-B | 247 | V247A | gTt | gCt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp5A-B | 247 | V247L | Gtt | Ctt | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | B.20 | 0.023256 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp5A-B | 247 | V247L | Gtt | Ctt | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp5A-B | 247 | V247L | Gtt | Ctt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 247 | V247del | GTT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 247 | V247I | Gtt | Att | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 247 | V247V | gtT | gtC | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp5A-B | 247 | V247F | Gtt | Ttt | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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