CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 241 | P241S | P3504S | nonsyn | Cct | Tct | 4350 | 4348 | 0.99954 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241S | P3504S | nonsyn | CcT | TcA | 4350 | 1 | 0.000229885 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241S | P3504S | nonsyn | CcT | TcC | 4350 | 1 | 0.000229885 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241L | P3504L | nonsyn | cCt | cTt | 3575 | 3573 | 0.999441 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241L | P3504L | nonsyn | cCT | cTC | 3575 | 2 | 0.000559441 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241H | P3504H | nonsyn | cCt | cAt | 585 | 585 | 1 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241P | P3504P | syn | ccT | ccC | 282 | 178 | 0.631206 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241P | P3504P | syn | ccT | ccA | 282 | 72 | 0.255319 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241P | P3504P | syn | ccT | ccG | 282 | 32 | 0.113475 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241T | P3504T | nonsyn | Cct | Act | 61 | 59 | 0.967213 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241T | P3504T | nonsyn | CcT | AcC | 61 | 2 | 0.0327869 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241del | P3504del | del | CCT | --- | 49 | 49 | 1 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241del2 | P3504del2 | del | cCT | c-- | 4 | 4 | 1 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241R | P3504R | nonsyn | cCt | cGt | 3 | 3 | 1 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241del1 | P3504del1 | del | ccT | cc- | 2 | 2 | 1 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241V | P3504V | nonsyn | CCT | GTG | 2 | 2 | 1 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241C | P3504C | nonsyn | CCt | TGt | 1 | 1 | 1 | 10775-10777 |
ORF1ab/nsp5A-B | 241 | P241W | P3504W | nonsyn | CCT | TGG | 1 | 1 | 1 | 10775-10777 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 4348 | 4350 | All | 0.000832 |
ORF1ab/nsp5A-B | 241 | P241S | CcT | TcA | 1 | 4350 | All | 0 |
ORF1ab/nsp5A-B | 241 | P241S | CcT | TcC | 1 | 4350 | All | 0 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 3573 | 3575 | All | 0.000683 |
ORF1ab/nsp5A-B | 241 | P241L | cCT | cTC | 2 | 3575 | All | 0 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 3267 | 3267 | B.1.526 | 0.076789 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1749 | 1749 | B.1.1.7 | 0.001566 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 585 | 585 | All | 0.000112 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 424 | 424 | B.1.625 | 0.997647 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 333 | 333 | P.1.7 | 0.106322 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 315 | 315 | B.1.1.351 | 0.879888 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 298 | 298 | P.1 | 0.004695 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 178 | 282 | All | 0.000034 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccA | 72 | 282 | All | 0.000014 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccG | 32 | 282 | All | 0.000006 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 225 | 225 | B.1.1.7 | 0.000201 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 121 | 121 | AY.59 | 0.064089 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 115 | 115 | B.1.351 | 0.003419 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 98 | 98 | B.1.1.7 | 0.000088 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 66 | 66 | AY.103 | 0.00041 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 59 | 61 | All | 0.000011 |
ORF1ab/nsp5A-B | 241 | P241T | CcT | AcC | 2 | 61 | All | 0 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 55 | 55 | AY.4 | 0.000086 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccA | 41 | 54 | AY.43 | 0.000182 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 9 | 54 | AY.43 | 0.00004 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccG | 4 | 54 | AY.43 | 0.000018 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 53 | 53 | B.1.2 | 0.000467 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 52 | 52 | B.1.258.17 | 0.005407 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 49 | 49 | All | 0.000009 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 48 | 48 | B.1 | 0.00044 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 40 | 40 | AY.20 | 0.001555 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 38 | 38 | B.1.1 | 0.000689 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 37 | 37 | B.1.617.2 | 0.000139 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 36 | 36 | AY.99.2 | 0.003318 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 35 | 35 | AY.4 | 0.000054 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 35 | 35 | B.1.617.2 | 0.000132 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 34 | 34 | B.1.429 | 0.0008 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 32 | 32 | B.1.2 | 0.000282 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 30 | 31 | AY.44 | 0.000183 |
ORF1ab/nsp5A-B | 241 | P241L | cCT | cTC | 1 | 31 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 28 | 28 | B.1.427 | 0.001414 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 28 | 28 | B.1.526 | 0.000658 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 26 | 27 | B.1 | 0.000238 |
ORF1ab/nsp5A-B | 241 | P241S | CcT | TcC | 1 | 27 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 27 | 27 | C.37 | 0.003134 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 25 | 25 | B.1.1 | 0.000454 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 25 | 25 | B.1.497 | 0.007869 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 23 | 23 | B.1.596.1 | 0.214953 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 21 | 22 | AY.43 | 0.000093 |
ORF1ab/nsp5A-B | 241 | P241S | CcT | TcA | 1 | 22 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 22 | 22 | B.1.1 | 0.000399 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 21 | 21 | B.1.525 | 0.002376 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 19 | 19 | AY.9.2 | 0.000698 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 18 | 18 | AY.26 | 0.00051 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccA | 9 | 17 | AY.4 | 0.000014 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccG | 6 | 17 | AY.4 | 0.000009 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 2 | 17 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 16 | 16 | P.1.14 | 0.000765 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 10 | 15 | B.1.1.7 | 0.000009 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccA | 4 | 15 | B.1.1.7 | 0.000004 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccG | 1 | 15 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 14 | 14 | AY.44 | 0.000085 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 12 | 12 | AY.13 | 0.001932 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 12 | 12 | AY.25 | 0.000072 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 12 | 12 | AY.5.4 | 0.00332 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 10 | 11 | AY.103 | 0.000062 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccG | 1 | 11 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccG | 11 | 11 | AY.37 | 0.003477 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 11 | 11 | B.1.551 | 0.014194 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 11 | 11 | P.1.15 | 0.002556 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccA | 10 | 10 | AY.54 | 0.000953 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 10 | 10 | B.1.258 | 0.000665 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 9 | 9 | AY.24 | 0.003879 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 9 | 9 | B.1.258.24 | 0.096774 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 9 | 9 | P.1.12 | 0.004356 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 8 | 8 | B.1.142 | 0.023188 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 7 | 7 | AY.46.4 | 0.001152 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 7 | 7 | B.1.369 | 0.001997 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 7 | 7 | P.1.17 | 0.001132 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 7 | 7 | Q.3 | 0.001015 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 7 | 7 | Q.8 | 0.001154 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 6 | 6 | B.1.128 | 0.003812 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 6 | 6 | B.1.214 | 0.021978 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 5 | 6 | B.1.617.2 | 0.000019 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccG | 1 | 6 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 6 | 6 | P.1.16 | 0.002245 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 6 | 6 | Q.4 | 0.002729 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 5 | 5 | A.1 | 0.001409 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 5 | 5 | AY.111 | 0.000916 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 5 | 5 | B.1.177.7 | 0.000824 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp5A-B | 241 | P241del2 | cCT | c-- | 4 | 4 | All | 0.000001 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 3 | 4 | AY.44 | 0.000018 |
ORF1ab/nsp5A-B | 241 | P241T | CcT | AcC | 1 | 4 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 4 | 4 | AY.7.1 | 0.000451 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 4 | 4 | B.1.243.1 | 0.088889 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 4 | 4 | B.1.36.38 | 0.006568 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 4 | 4 | B.1.619.1 | 0.002566 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 4 | 4 | B.1.627 | 0.008081 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 4 | 4 | B.39 | 0.009324 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 3 | 3 | A.27 | 0.004967 |
ORF1ab/nsp5A-B | 241 | P241R | cCt | cGt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccG | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 2 | 3 | AY.44 | 0.000012 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccA | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccA | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 3 | 3 | B.1.36.31 | 0.005254 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 3 | 3 | B.1.627 | 0.006061 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 3 | 3 | B.1.91 | 0.006224 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 3 | 3 | N.4 | 0.012766 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 3 | 3 | P.1.13 | 0.002695 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 3 | 3 | P.1.4 | 0.00293 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 3 | 3 | Q.7 | 0.003333 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp5A-B | 241 | P241V | CCT | GTG | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp5A-B | 241 | P241del1 | ccT | cc- | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 241 | P241V | CCT | GTG | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccA | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccA | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp5A-B | 241 | P241T | CcT | AcC | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 2 | 2 | B.1.1.237 | 0.010811 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 2 | 2 | B.1.1.301 | 0.002358 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | B.1.1.349 | 0.020619 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccG | 2 | 2 | B.1.379 | 0.034483 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | B.1.560 | 0.009259 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp5A-B | 241 | P241L | cCT | cTC | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp5A-B | 241 | P241C | CCt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 241 | P241W | CCT | TGG | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 241 | P241del1 | ccT | cc- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccA | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp5A-B | 241 | P241del2 | cCT | c-- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp5A-B | 241 | P241R | cCt | cGt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccA | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 241 | P241del1 | ccT | cc- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 241 | P241R | cCt | cGt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | AY.5.1 | 0.003759 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccA | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp5A-B | 241 | P241C | CCt | TGt | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.1.191 | 0.004762 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.1.267 | 0.010101 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp5A-B | 241 | P241del2 | cCT | c-- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp5A-B | 241 | P241W | CCT | TGG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 241 | P241R | cCt | cGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | B.1.258.12 | 0.007874 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.467 | 0.04 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp5A-B | 241 | P241del2 | cCT | c-- | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccG | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp5A-B | 241 | P241del2 | cCT | c-- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | B.6.1 | 0.026316 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 241 | P241T | Cct | Act | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp5A-B | 241 | P241del | CCT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccA | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp5A-B | 241 | P241S | Cct | Tct | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp5A-B | 241 | P241P | ccT | ccC | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp5A-B | 241 | P241L | cCt | cTt | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp5A-B | 241 | P241H | cCt | cAt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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