CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 24

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B24T24IT3287InonsynaCaaTa14381438110124-10126
ORF1ab/nsp5A-B24T24AT3287AnonsynAcaGca11731173110124-10126
ORF1ab/nsp5A-B24T24TT3287TsynacAacG1491330.89261710124-10126
ORF1ab/nsp5A-B24T24TT3287TsynacAacT149100.067114110124-10126
ORF1ab/nsp5A-B24T24TT3287TsynacAacC14960.040268510124-10126
ORF1ab/nsp5A-B24T24delT3287deldelACA---4444110124-10126
ORF1ab/nsp5A-B24T24KT3287KnonsynaCaaAa2222110124-10126
ORF1ab/nsp5A-B24T24ST3287SnonsynAcaTca1313110124-10126
ORF1ab/nsp5A-B24T24RT3287RnonsynaCaaGa22110124-10126
ORF1ab/nsp5A-B24T24NT3287NnonsynaCAaAT11110124-10126
ORF1ab/nsp5A-B24T24MT3287MnonsynaCAaTG11110124-10126
ORF1ab/nsp5A-B24T24LT3287LnonsynACaCTa11110124-10126
ORF1ab/nsp5A-B24T24del2T3287del2delACa--a11110124-10126

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B24T24IaCaaTa14381438All0.000275
ORF1ab/nsp5A-B24T24AAcaGca11731173All0.000224
ORF1ab/nsp5A-B24T24IaCaaTa753753B.1.1.70.000674
ORF1ab/nsp5A-B24T24AAcaGca649649B.1.5240.912799
ORF1ab/nsp5A-B24T24AAcaGca281281AY.390.006944
ORF1ab/nsp5A-B24T24TacAacG133149All0.000025
ORF1ab/nsp5A-B24T24TacAacT10149All0.000002
ORF1ab/nsp5A-B24T24TacAacC6149All0.000001
ORF1ab/nsp5A-B24T24IaCaaTa122122C.1.20.519149
ORF1ab/nsp5A-B24T24TacAacG9798B.1.1.70.000087
ORF1ab/nsp5A-B24T24TacAacC198B.1.1.70.000001
ORF1ab/nsp5A-B24T24IaCaaTa9898B.1.3510.002913
ORF1ab/nsp5A-B24T24AAcaGca6464AY.540.006102
ORF1ab/nsp5A-B24T24AAcaGca4545B.10.000412
ORF1ab/nsp5A-B24T24delACA---4444All0.000008
ORF1ab/nsp5A-B24T24IaCaaTa3535AY.540.003337
ORF1ab/nsp5A-B24T24IaCaaTa2929B.1.5260.000682
ORF1ab/nsp5A-B24T24IaCaaTa2626AY.40.00004
ORF1ab/nsp5A-B24T24IaCaaTa2424AY.440.000146
ORF1ab/nsp5A-B24T24IaCaaTa2323AY.1190.000812
ORF1ab/nsp5A-B24T24KaCaaAa2222All0.000004
ORF1ab/nsp5A-B24T24AAcaGca2222B.1.1.70.00002
ORF1ab/nsp5A-B24T24IaCaaTa2121B.10.000192
ORF1ab/nsp5A-B24T24IaCaaTa2121B.1.10.000381
ORF1ab/nsp5A-B24T24IaCaaTa1919B.1.617.20.000072
ORF1ab/nsp5A-B24T24IaCaaTa1818AY.1030.000112
ORF1ab/nsp5A-B24T24delACA---1818B.1.1.70.000016
ORF1ab/nsp5A-B24T24IaCaaTa1818B.1.20.000158
ORF1ab/nsp5A-B24T24IaCaaTa1515C.36.3.10.040761
ORF1ab/nsp5A-B24T24IaCaaTa1414AY.430.000062
ORF1ab/nsp5A-B24T24AAcaGca1414B.6.60.012444
ORF1ab/nsp5A-B24T24SAcaTca1313All0.000002
ORF1ab/nsp5A-B24T24IaCaaTa1313B.1.1.10.004247
ORF1ab/nsp5A-B24T24IaCaaTa1313P.10.000205
ORF1ab/nsp5A-B24T24IaCaaTa1313P.1.150.00302
ORF1ab/nsp5A-B24T24AAcaGca1212AY.40.000019
ORF1ab/nsp5A-B24T24KaCaaAa1212C.370.001393
ORF1ab/nsp5A-B24T24SAcaTca1111AY.98.10.000533
ORF1ab/nsp5A-B24T24IaCaaTa1010AY.250.00006
ORF1ab/nsp5A-B24T24IaCaaTa1010B.1.1.5190.000397
ORF1ab/nsp5A-B24T24IaCaaTa1010B.1.1600.000312
ORF1ab/nsp5A-B24T24IaCaaTa99AY.940.003984
ORF1ab/nsp5A-B24T24AAcaGca99B.1.617.20.000034
ORF1ab/nsp5A-B24T24TacAacG79B.1.617.20.000026
ORF1ab/nsp5A-B24T24TacAacT29B.1.617.20.000008
ORF1ab/nsp5A-B24T24IaCaaTa77AY.150.015556
ORF1ab/nsp5A-B24T24TacAacG77B.1.20.000062
ORF1ab/nsp5A-B24T24IaCaaTa77B.1.214.20.004197
ORF1ab/nsp5A-B24T24TacAacG56AY.40.000008
ORF1ab/nsp5A-B24T24TacAacT16AY.40.000002
ORF1ab/nsp5A-B24T24AAcaGca66AY.4.20.00013
ORF1ab/nsp5A-B24T24AAcaGca66AY.9.20.00022
ORF1ab/nsp5A-B24T24AAcaGca66B.1.4290.000141
ORF1ab/nsp5A-B24T24IaCaaTa55AY.330.000334
ORF1ab/nsp5A-B24T24delACA---55AY.4.50.000537
ORF1ab/nsp5A-B24T24AAcaGca55AY.440.00003
ORF1ab/nsp5A-B24T24IaCaaTa55B.1.1770.000066
ORF1ab/nsp5A-B24T24IaCaaTa55P.20.000933
ORF1ab/nsp5A-B24T24IaCaaTa44AY.1020.000106
ORF1ab/nsp5A-B24T24AAcaGca44AY.1190.000141
ORF1ab/nsp5A-B24T24KaCaaAa44AY.1190.000141
ORF1ab/nsp5A-B24T24TacAacG34AY.250.000018
ORF1ab/nsp5A-B24T24TacAacC14AY.250.000006
ORF1ab/nsp5A-B24T24IaCaaTa44AY.470.000124
ORF1ab/nsp5A-B24T24TacAacT44AY.98.10.000194
ORF1ab/nsp5A-B24T24IaCaaTa44AY.99.20.000369
ORF1ab/nsp5A-B24T24AAcaGca44B.1.3250.027586
ORF1ab/nsp5A-B24T24IaCaaTa44B.1.416.10.00625
ORF1ab/nsp5A-B24T24IaCaaTa44D.20.0003
ORF1ab/nsp5A-B24T24AAcaGca33AY.1030.000019
ORF1ab/nsp5A-B24T24TacAacG23AY.430.000009
ORF1ab/nsp5A-B24T24TacAacT13AY.430.000004
ORF1ab/nsp5A-B24T24IaCaaTa33AY.520.002443
ORF1ab/nsp5A-B24T24AAcaGca33B.1.10.000054
ORF1ab/nsp5A-B24T24delACA---33B.1.1770.00004
ORF1ab/nsp5A-B24T24IaCaaTa33B.1.177.600.000655
ORF1ab/nsp5A-B24T24AAcaGca33B.1.2580.0002
ORF1ab/nsp5A-B24T24AAcaGca33B.1.3360.007317
ORF1ab/nsp5A-B24T24IaCaaTa33B.1.5960.000261
ORF1ab/nsp5A-B24T24TacAacG33C.370.000348
ORF1ab/nsp5A-B24T24IaCaaTa33P.1.140.000143
ORF1ab/nsp5A-B24T24RaCaaGa22All0
ORF1ab/nsp5A-B24T24AAcaGca22AY.1020.000053
ORF1ab/nsp5A-B24T24AAcaGca22AY.200.000078
ORF1ab/nsp5A-B24T24IaCaaTa22AY.200.000078
ORF1ab/nsp5A-B24T24IaCaaTa22AY.290.000032
ORF1ab/nsp5A-B24T24IaCaaTa22AY.4.20.000043
ORF1ab/nsp5A-B24T24delACA---22AY.430.000009
ORF1ab/nsp5A-B24T24TacAacG22AY.440.000012
ORF1ab/nsp5A-B24T24delACA---22AY.46.20.001271
ORF1ab/nsp5A-B24T24delACA---22AY.50.000041
ORF1ab/nsp5A-B24T24IaCaaTa22AY.60.000082
ORF1ab/nsp5A-B24T24IaCaaTa22AY.690.000373
ORF1ab/nsp5A-B24T24TacAacC12AY.750.000056
ORF1ab/nsp5A-B24T24TacAacG12AY.750.000056
ORF1ab/nsp5A-B24T24KaCaaAa22B.10.000018
ORF1ab/nsp5A-B24T24TacAacG22B.1.1.280.000622
ORF1ab/nsp5A-B24T24RaCaaGa22B.1.1.70.000002
ORF1ab/nsp5A-B24T24IaCaaTa22B.1.5650.001621
ORF1ab/nsp5A-B24T24IaCaaTa22B.1.5760.001813
ORF1ab/nsp5A-B24T24IaCaaTa22B.60.00182
ORF1ab/nsp5A-B24T24IaCaaTa22C.370.000232
ORF1ab/nsp5A-B24T24IaCaaTa22Q.80.00033
ORF1ab/nsp5A-B24T24IaCaaTa11A.30.002096
ORF1ab/nsp5A-B24T24NaCAaAT11All0
ORF1ab/nsp5A-B24T24del2ACa--a11All0
ORF1ab/nsp5A-B24T24MaCAaTG11All0
ORF1ab/nsp5A-B24T24LACaCTa11All0
ORF1ab/nsp5A-B24T24TacAacG11AY.1020.000027
ORF1ab/nsp5A-B24T24AAcaGca11AY.1100.000113
ORF1ab/nsp5A-B24T24delACA---11AY.1110.000183
ORF1ab/nsp5A-B24T24AAcaGca11AY.1210.000135
ORF1ab/nsp5A-B24T24IaCaaTa11AY.130.000161
ORF1ab/nsp5A-B24T24AAcaGca11AY.160.00038
ORF1ab/nsp5A-B24T24AAcaGca11AY.230.00007
ORF1ab/nsp5A-B24T24IaCaaTa11AY.230.00007
ORF1ab/nsp5A-B24T24delACA---11AY.250.000006
ORF1ab/nsp5A-B24T24IaCaaTa11AY.260.000028
ORF1ab/nsp5A-B24T24TacAacC11AY.290.000016
ORF1ab/nsp5A-B24T24AAcaGca11AY.30.00001
ORF1ab/nsp5A-B24T24IaCaaTa11AY.30.00001
ORF1ab/nsp5A-B24T24IaCaaTa11AY.300.000396
ORF1ab/nsp5A-B24T24IaCaaTa11AY.350.000233
ORF1ab/nsp5A-B24T24IaCaaTa11AY.360.000148
ORF1ab/nsp5A-B24T24IaCaaTa11AY.380.000499
ORF1ab/nsp5A-B24T24IaCaaTa11AY.390.000025
ORF1ab/nsp5A-B24T24delACA---11AY.40.000002
ORF1ab/nsp5A-B24T24AAcaGca11AY.4.50.000107
ORF1ab/nsp5A-B24T24IaCaaTa11AY.400.000964
ORF1ab/nsp5A-B24T24AAcaGca11AY.410.000294
ORF1ab/nsp5A-B24T24AAcaGca11AY.460.000104
ORF1ab/nsp5A-B24T24AAcaGca11AY.60.000041
ORF1ab/nsp5A-B24T24TacAacG11AY.610.000105
ORF1ab/nsp5A-B24T24IaCaaTa11AY.710.000475
ORF1ab/nsp5A-B24T24IaCaaTa11AY.860.00083
ORF1ab/nsp5A-B24T24AAcaGca11AY.920.000287
ORF1ab/nsp5A-B24T24AAcaGca11AY.930.000273
ORF1ab/nsp5A-B24T24TacAacG11AY.930.000273
ORF1ab/nsp5A-B24T24AAcaGca11AY.950.000761
ORF1ab/nsp5A-B24T24IaCaaTa11AY.98.10.000048
ORF1ab/nsp5A-B24T24AAcaGca11B0.000128
ORF1ab/nsp5A-B24T24TacAacC11B.1.10.000018
ORF1ab/nsp5A-B24T24KaCaaAa11B.1.1.100.001115
ORF1ab/nsp5A-B24T24delACA---11B.1.1.1590.004673
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.1.2010.02439
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.1.2160.00089
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.1.2440.015385
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.1.3180.000302
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.1.390.00051
ORF1ab/nsp5A-B24T24AAcaGca11B.1.1.4200.001006
ORF1ab/nsp5A-B24T24del2ACa--a11B.1.1.5190.00004
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.1.5230.001563
ORF1ab/nsp5A-B24T24KaCaaAa11B.1.1.70.000001
ORF1ab/nsp5A-B24T24SAcaTca11B.1.1.70.000001
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.1.700.000341
ORF1ab/nsp5A-B24T24AAcaGca11B.1.1160.011628
ORF1ab/nsp5A-B24T24AAcaGca11B.1.1570.002985
ORF1ab/nsp5A-B24T24TacAacC11B.1.1600.000031
ORF1ab/nsp5A-B24T24AAcaGca11B.1.160.160.000929
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.160.160.000929
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.160.310.008065
ORF1ab/nsp5A-B24T24delACA---11B.1.1610.017241
ORF1ab/nsp5A-B24T24SAcaTca11B.1.1770.000013
ORF1ab/nsp5A-B24T24delACA---11B.1.177.100.000878
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.177.170.000821
ORF1ab/nsp5A-B24T24delACA---11B.1.177.180.00116
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.177.520.001757
ORF1ab/nsp5A-B24T24delACA---11B.1.177.690.001484
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.177.730.000566
ORF1ab/nsp5A-B24T24TacAacG11B.1.177.770.000726
ORF1ab/nsp5A-B24T24delACA---11B.1.177.810.000189
ORF1ab/nsp5A-B24T24delACA---11B.1.1790.003759
ORF1ab/nsp5A-B24T24MaCAaTG11B.1.20.000009
ORF1ab/nsp5A-B24T24AAcaGca11B.1.20.000009
ORF1ab/nsp5A-B24T24AAcaGca11B.1.2100.002132
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.2410.000812
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.2580.000067
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.258.160.001637
ORF1ab/nsp5A-B24T24delACA---11B.1.258.30.001675
ORF1ab/nsp5A-B24T24AAcaGca11B.1.2600.003344
ORF1ab/nsp5A-B24T24AAcaGca11B.1.30.002618
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.351.30.000876
ORF1ab/nsp5A-B24T24AAcaGca11B.1.360.000146
ORF1ab/nsp5A-B24T24AAcaGca11B.1.3620.001541
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.4040.001302
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.4270.00005
ORF1ab/nsp5A-B24T24AAcaGca11B.1.4270.00005
ORF1ab/nsp5A-B24T24AAcaGca11B.1.4970.000315
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.4970.000315
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.5250.000113
ORF1ab/nsp5A-B24T24KaCaaAa11B.1.5250.000113
ORF1ab/nsp5A-B24T24TacAacT11B.1.5260.000024
ORF1ab/nsp5A-B24T24NaCAaAT11B.1.5260.000024
ORF1ab/nsp5A-B24T24AAcaGca11B.1.5260.000024
ORF1ab/nsp5A-B24T24AAcaGca11B.1.5600.00463
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.5950.000261
ORF1ab/nsp5A-B24T24AAcaGca11B.1.5960.000087
ORF1ab/nsp5A-B24T24AAcaGca11B.1.6090.000479
ORF1ab/nsp5A-B24T24TacAacT11B.1.6090.000479
ORF1ab/nsp5A-B24T24AAcaGca11B.1.6210.000089
ORF1ab/nsp5A-B24T24KaCaaAa11B.1.6210.000089
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.621.10.000506
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.6230.000536
ORF1ab/nsp5A-B24T24IaCaaTa11B.1.6370.000073
ORF1ab/nsp5A-B24T24IaCaaTa11C.10.002392
ORF1ab/nsp5A-B24T24LACaCTa11C.350.000774
ORF1ab/nsp5A-B24T24IaCaaTa11C.36.30.000567
ORF1ab/nsp5A-B24T24delACA---11N.40.004255
ORF1ab/nsp5A-B24T24IaCaaTa11P.1.130.000898
ORF1ab/nsp5A-B24T24IaCaaTa11Q.10.000126
ORF1ab/nsp5A-B24T24IaCaaTa11R.10.00009