CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 24 | T24I | T3287I | nonsyn | aCa | aTa | 1438 | 1438 | 1 | 10124-10126 |
ORF1ab/nsp5A-B | 24 | T24A | T3287A | nonsyn | Aca | Gca | 1173 | 1173 | 1 | 10124-10126 |
ORF1ab/nsp5A-B | 24 | T24T | T3287T | syn | acA | acG | 149 | 133 | 0.892617 | 10124-10126 |
ORF1ab/nsp5A-B | 24 | T24T | T3287T | syn | acA | acT | 149 | 10 | 0.0671141 | 10124-10126 |
ORF1ab/nsp5A-B | 24 | T24T | T3287T | syn | acA | acC | 149 | 6 | 0.0402685 | 10124-10126 |
ORF1ab/nsp5A-B | 24 | T24del | T3287del | del | ACA | --- | 44 | 44 | 1 | 10124-10126 |
ORF1ab/nsp5A-B | 24 | T24K | T3287K | nonsyn | aCa | aAa | 22 | 22 | 1 | 10124-10126 |
ORF1ab/nsp5A-B | 24 | T24S | T3287S | nonsyn | Aca | Tca | 13 | 13 | 1 | 10124-10126 |
ORF1ab/nsp5A-B | 24 | T24R | T3287R | nonsyn | aCa | aGa | 2 | 2 | 1 | 10124-10126 |
ORF1ab/nsp5A-B | 24 | T24N | T3287N | nonsyn | aCA | aAT | 1 | 1 | 1 | 10124-10126 |
ORF1ab/nsp5A-B | 24 | T24M | T3287M | nonsyn | aCA | aTG | 1 | 1 | 1 | 10124-10126 |
ORF1ab/nsp5A-B | 24 | T24L | T3287L | nonsyn | ACa | CTa | 1 | 1 | 1 | 10124-10126 |
ORF1ab/nsp5A-B | 24 | T24del2 | T3287del2 | del | ACa | --a | 1 | 1 | 1 | 10124-10126 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1438 | 1438 | All | 0.000275 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1173 | 1173 | All | 0.000224 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 753 | 753 | B.1.1.7 | 0.000674 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 649 | 649 | B.1.524 | 0.912799 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 281 | 281 | AY.39 | 0.006944 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acG | 133 | 149 | All | 0.000025 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acT | 10 | 149 | All | 0.000002 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acC | 6 | 149 | All | 0.000001 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 122 | 122 | C.1.2 | 0.519149 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acG | 97 | 98 | B.1.1.7 | 0.000087 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acC | 1 | 98 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 98 | 98 | B.1.351 | 0.002913 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 64 | 64 | AY.54 | 0.006102 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 45 | 45 | B.1 | 0.000412 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 44 | 44 | All | 0.000008 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 35 | 35 | AY.54 | 0.003337 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 29 | 29 | B.1.526 | 0.000682 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 26 | 26 | AY.4 | 0.00004 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 24 | 24 | AY.44 | 0.000146 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 23 | 23 | AY.119 | 0.000812 |
ORF1ab/nsp5A-B | 24 | T24K | aCa | aAa | 22 | 22 | All | 0.000004 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 21 | 21 | B.1 | 0.000192 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 21 | 21 | B.1.1 | 0.000381 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 18 | 18 | B.1.2 | 0.000158 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 15 | 15 | C.36.3.1 | 0.040761 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 14 | 14 | B.6.6 | 0.012444 |
ORF1ab/nsp5A-B | 24 | T24S | Aca | Tca | 13 | 13 | All | 0.000002 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 13 | 13 | B.1.1.1 | 0.004247 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 13 | 13 | P.1.15 | 0.00302 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp5A-B | 24 | T24K | aCa | aAa | 12 | 12 | C.37 | 0.001393 |
ORF1ab/nsp5A-B | 24 | T24S | Aca | Tca | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 9 | 9 | AY.94 | 0.003984 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acG | 7 | 9 | B.1.617.2 | 0.000026 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acT | 2 | 9 | B.1.617.2 | 0.000008 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 7 | 7 | AY.15 | 0.015556 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acG | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 7 | 7 | B.1.214.2 | 0.004197 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acG | 5 | 6 | AY.4 | 0.000008 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acT | 1 | 6 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp5A-B | 24 | T24K | aCa | aAa | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acG | 3 | 4 | AY.25 | 0.000018 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acC | 1 | 4 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 4 | 4 | B.1.325 | 0.027586 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 4 | 4 | B.1.416.1 | 0.00625 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acG | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acT | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 3 | 3 | AY.52 | 0.002443 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 3 | 3 | B.1.336 | 0.007317 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acG | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp5A-B | 24 | T24R | aCa | aGa | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acG | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acC | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acG | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 24 | T24K | aCa | aAa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acG | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp5A-B | 24 | T24R | aCa | aGa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp5A-B | 24 | T24N | aCA | aAT | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 24 | T24del2 | ACa | --a | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 24 | T24M | aCA | aTG | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 24 | T24L | ACa | CTa | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acG | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 24 | T24K | aCa | aAa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.1.201 | 0.02439 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.1.244 | 0.015385 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp5A-B | 24 | T24del2 | ACa | --a | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp5A-B | 24 | T24K | aCa | aAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 24 | T24S | Aca | Tca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.116 | 0.011628 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp5A-B | 24 | T24S | Aca | Tca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acG | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp5A-B | 24 | T24M | aCA | aTG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp5A-B | 24 | T24K | aCa | aAa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp5A-B | 24 | T24N | aCA | aAT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp5A-B | 24 | T24T | acA | acT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp5A-B | 24 | T24A | Aca | Gca | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp5A-B | 24 | T24K | aCa | aAa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp5A-B | 24 | T24L | ACa | CTa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp5A-B | 24 | T24del | ACA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp5A-B | 24 | T24I | aCa | aTa | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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