CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 234

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp5A-B	234	A234V	A3497V	nonsyn	gCt	gTt	3829	3827	0.999478	10754-10756
ORF1ab/nsp5A-B	234	A234V	A3497V	nonsyn	gCT	gTA	3829	2	0.00052233	10754-10756
ORF1ab/nsp5A-B	234	A234T	A3497T	nonsyn	Gct	Act	475	475	1	10754-10756
ORF1ab/nsp5A-B	234	A234S	A3497S	nonsyn	Gct	Tct	223	223	1	10754-10756
ORF1ab/nsp5A-B	234	A234A	A3497A	syn	gcT	gcC	99	83	0.838384	10754-10756
ORF1ab/nsp5A-B	234	A234A	A3497A	syn	gcT	gcG	99	9	0.0909091	10754-10756
ORF1ab/nsp5A-B	234	A234A	A3497A	syn	gcT	gcA	99	7	0.0707071	10754-10756
ORF1ab/nsp5A-B	234	A234del	A3497del	del	GCT	---	47	47	1	10754-10756
ORF1ab/nsp5A-B	234	A234D	A3497D	nonsyn	gCt	gAt	8	8	1	10754-10756
ORF1ab/nsp5A-B	234	A234del1	A3497del1	del	gcT	gc-	5	4	0.8	10754-10756
ORF1ab/nsp5A-B	234	A234del1	A3497del1	del	gCt	g-t	5	1	0.2	10754-10756
ORF1ab/nsp5A-B	234	A234F	A3497F	nonsyn	GCt	TTt	3	3	1	10754-10756
ORF1ab/nsp5A-B	234	A234G	A3497G	nonsyn	gCt	gGt	3	2	0.666667	10754-10756
ORF1ab/nsp5A-B	234	A234G	A3497G	nonsyn	gCT	gGC	3	1	0.333333	10754-10756
ORF1ab/nsp5A-B	234	A234N	A3497N	nonsyn	GCt	AAt	2	2	1	10754-10756
ORF1ab/nsp5A-B	234	A234L	A3497L	nonsyn	GCT	TTA	2	2	1	10754-10756
ORF1ab/nsp5A-B	234	A234P	A3497P	nonsyn	Gct	Cct	2	2	1	10754-10756
ORF1ab/nsp5A-B	234	A234del2	A3497del2	del	GCt	--t	2	1	0.5	10754-10756
ORF1ab/nsp5A-B	234	A234del2	A3497del2	del	gCT	g--	2	1	0.5	10754-10756
ORF1ab/nsp5A-B	234	A234Y	A3497Y	nonsyn	GCt	TAt	1	1	1	10754-10756

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3827	3829	All	0.000732
ORF1ab/nsp5A-B	234	A234V	gCT	gTA	2	3829	All	0
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	644	644	AY.4	0.001002
ORF1ab/nsp5A-B	234	A234T	Gct	Act	475	475	All	0.000091
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	269	269	B.1.2	0.002369
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	223	223	All	0.000043
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	218	218	AY.3	0.002168
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	212	212	B.1.1	0.003846
ORF1ab/nsp5A-B	234	A234T	Gct	Act	176	176	AY.9.2	0.006464
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	153	153	AY.42	0.006155
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	151	151	B.1.177	0.001988
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	126	126	B.1.617.2	0.000474
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	113	113	AY.25	0.00068
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	100	100	AY.39.1	0.003961
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	83	99	All	0.000016
ORF1ab/nsp5A-B	234	A234A	gcT	gcG	9	99	All	0.000002
ORF1ab/nsp5A-B	234	A234A	gcT	gcA	7	99	All	0.000001
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	98	98	B.1	0.000898
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	96	96	B.1.1.7	0.000086
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	86	86	AY.43	0.000381
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	85	85	B.1.429	0.002
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	79	79	D.2	0.005928
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	76	76	AY.103	0.000472
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	75	75	AY.44	0.000457
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	65	65	B.1.1.519	0.002581
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	55	55	B.1.1.349	0.56701
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	54	54	B.1.1.347	0.981818
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	48	48	AY.102	0.001273
ORF1ab/nsp5A-B	234	A234del	GCT	---	47	47	All	0.000009
ORF1ab/nsp5A-B	234	A234T	Gct	Act	44	44	B.1.1.7	0.000039
ORF1ab/nsp5A-B	234	A234T	Gct	Act	44	44	B.1.221	0.003125
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	41	43	B.1.1.7	0.000037
ORF1ab/nsp5A-B	234	A234A	gcT	gcG	1	43	B.1.1.7	0.000001
ORF1ab/nsp5A-B	234	A234A	gcT	gcA	1	43	B.1.1.7	0.000001
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	41	41	B.1.596	0.003573
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	40	40	AY.119	0.001412
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	39	39	B.1.340	0.167382
ORF1ab/nsp5A-B	234	A234T	Gct	Act	32	32	AY.3.1	0.002728
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	30	30	AY.12	0.009482
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	30	30	AY.5	0.000619
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	29	29	AY.39	0.000717
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	28	28	AY.98.1	0.001356
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	26	26	B.1.243	0.001809
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	26	26	B.1.258	0.00173
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	25	25	AY.120	0.000929
ORF1ab/nsp5A-B	234	A234T	Gct	Act	25	25	AY.4	0.000039
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	25	25	B.1.1.1	0.008167
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	24	24	B.1.1.231	0.074303
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	23	23	AY.4.2	0.000499
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	22	22	AY.100	0.001012
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	22	22	AY.29	0.000347
ORF1ab/nsp5A-B	234	A234T	Gct	Act	22	22	AY.3	0.000219
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	21	21	B.1.177.87	0.015284
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	20	20	B.1.621	0.00177
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	18	18	B.1.495	0.163636
ORF1ab/nsp5A-B	234	A234T	Gct	Act	16	16	AY.113	0.002278
ORF1ab/nsp5A-B	234	A234del	GCT	---	16	16	B.1.1.7	0.000014
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	14	14	B.1.160	0.000437
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	13	13	AY.33	0.000868
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	13	13	B.1.1.356	0.111111
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	12	12	AY.46.6	0.000866
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	12	12	B.1.1.210	0.068571
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	12	12	B.1.427	0.000606
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	12	12	B.1.596	0.001046
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	11	11	B.1.1.306	0.004822
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	11	11	B.1.1.7	0.00001
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	11	11	B.1.221	0.000781
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	10	10	B.1.1.28	0.003112
ORF1ab/nsp5A-B	234	A234T	Gct	Act	10	10	B.1.36.17	0.004941
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	10	10	B.1.517	0.00427
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	9	9	AY.20	0.00035
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	9	9	B.1.1.214	0.000499
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	9	9	B.1.177.4	0.0019
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	9	9	C.37	0.001045
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	9	9	R.1	0.00081
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	8	8	AD.2	0.001752
ORF1ab/nsp5A-B	234	A234D	gCt	gAt	8	8	All	0.000002
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	8	8	AY.4	0.000012
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	8	8	AY.77	0.009019
ORF1ab/nsp5A-B	234	A234T	Gct	Act	8	8	AY.9	0.000541
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	8	8	B	0.001022
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	8	8	B.1.1.432	0.010127
ORF1ab/nsp5A-B	234	A234T	Gct	Act	8	8	B.1.2	0.00007
ORF1ab/nsp5A-B	234	A234A	gcT	gcG	6	8	B.1.2	0.000053
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	2	8	B.1.2	0.000018
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	8	8	B.1.258.17	0.000832
ORF1ab/nsp5A-B	234	A234T	Gct	Act	8	8	B.37	0.228571
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	7	7	AY.3.1	0.000597
ORF1ab/nsp5A-B	234	A234T	Gct	Act	7	7	AY.44	0.000043
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	7	7	B.1.1.159	0.03271
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	7	7	B.1.311	0.001922
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	7	7	B.1.36	0.001021
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	7	7	B.1.466.2	0.002739
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	6	6	AY.23	0.000418
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	6	6	AY.3	0.00006
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	6	6	AY.36	0.000889
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	6	6	AY.6	0.000247
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	6	6	B.1.1.317	0.00247
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	6	6	B.1.1.381	0.24
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	6	6	B.1.1.416	0.00543
ORF1ab/nsp5A-B	234	A234T	Gct	Act	6	6	B.1.1.63	0.002315
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	6	6	B.1.595	0.001566
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	6	6	B.1.617.1	0.000774
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	6	6	P.1.17	0.000971
ORF1ab/nsp5A-B	234	A234del1	gcT	gc-	4	5	All	0.000001
ORF1ab/nsp5A-B	234	A234del1	gCt	g-t	1	5	All	0
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	5	5	AY.103	0.000031
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	5	5	AY.117	0.000423
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	5	5	AY.120.2.1	0.002491
ORF1ab/nsp5A-B	234	A234del	GCT	---	5	5	AY.4	0.000008
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	5	5	AY.79	0.006053
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	5	5	AY.82	0.006784
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	3	5	B.1	0.000027
ORF1ab/nsp5A-B	234	A234A	gcT	gcA	2	5	B.1	0.000018
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	5	5	B.1.1.216	0.004452
ORF1ab/nsp5A-B	234	A234T	Gct	Act	5	5	B.1.1.377	0.006906
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	5	5	B.1.177.7	0.000824
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	5	5	P.1	0.000079
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	5	5	P.1.7	0.001596
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	5	5	R.1	0.00045
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	4		0.111111
ORF1ab/nsp5A-B	234	A234V	gCT	gTA	2	4		0.111111
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	4	4	A.2.5	0.001996
ORF1ab/nsp5A-B	234	A234T	Gct	Act	4	4	AY.102	0.000106
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	4	4	AY.118	0.000251
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	4	4	AY.25	0.000024
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	4	4	AY.26	0.000113
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	4	4	AY.39.2	0.006163
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	4	4	AY.57	0.002625
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	4	4	AY.74	0.000463
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	4	4	AY.75	0.000224
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	4	4	AY.95	0.003044
ORF1ab/nsp5A-B	234	A234D	gCt	gAt	4	4	B.1	0.000037
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	4	4	B.1.1	0.000073
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	4	4	B.1.1.222	0.000816
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	4	4	B.1.177.86	0.000734
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	4	4	B.1.236	0.008214
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	4	4	B.1.36.8	0.004
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	4	4	B.1.400	0.001716
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	4	4	B.1.582	0.001963
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	4	4	B.1.617.2	0.000015
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	4	4	B.1.91	0.008299
ORF1ab/nsp5A-B	234	A234F	GCt	TTt	3	3	All	0.000001
ORF1ab/nsp5A-B	234	A234G	gCt	gGt	2	3	All	0
ORF1ab/nsp5A-B	234	A234G	gCT	gGC	1	3	All	0
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	3	3	AY.100	0.000138
ORF1ab/nsp5A-B	234	A234T	Gct	Act	3	3	AY.103	0.000019
ORF1ab/nsp5A-B	234	A234T	Gct	Act	3	3	AY.119	0.000106
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	AY.120.1	0.000963
ORF1ab/nsp5A-B	234	A234T	Gct	Act	3	3	AY.25	0.000018
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	AY.27	0.000194
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	3	3	AY.29	0.000047
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	3	3	AY.4	0.000005
ORF1ab/nsp5A-B	234	A234del	GCT	---	3	3	AY.4.5	0.000322
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	3	3	AY.43	0.000013
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	3	3	AY.44	0.000018
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	AY.61	0.000314
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	B.1.1.192	0.006928
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	B.1.1.208	0.036585
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	B.1.1.33	0.001263
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	B.1.1.372	0.002066
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	B.1.1.448	0.006098
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	B.1.160.7	0.006237
ORF1ab/nsp5A-B	234	A234del	GCT	---	3	3	B.1.177	0.00004
ORF1ab/nsp5A-B	234	A234T	Gct	Act	3	3	B.1.177	0.00004
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	B.1.177.16	0.001993
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	B.1.177.73	0.001699
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	3	3	B.1.2	0.000026
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	B.1.218	0.015464
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	B.1.240	0.000647
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	B.1.346	0.003932
ORF1ab/nsp5A-B	234	A234T	Gct	Act	3	3	B.1.375	0.002459
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	B.1.549	0.021583
ORF1ab/nsp5A-B	234	A234T	Gct	Act	3	3	B.1.617.2	0.000011
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	3	3	B.1.617.2	0.000011
ORF1ab/nsp5A-B	234	A234A	gcT	gcA	3	3	B.1.621	0.000266
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	3	3	B.1.628	0.001057
ORF1ab/nsp5A-B	234	A234T	Gct	Act	3	3	P.1	0.000047
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	3	3	P.2	0.00056
ORF1ab/nsp5A-B	234	A234F	GCt	TTt	2	2		0.111111
ORF1ab/nsp5A-B	234	A234L	GCT	TTA	2	2		0.111111
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	A.2	0.001324
ORF1ab/nsp5A-B	234	A234N	GCt	AAt	2	2	All	0
ORF1ab/nsp5A-B	234	A234L	GCT	TTA	2	2	All	0
ORF1ab/nsp5A-B	234	A234P	Gct	Cct	2	2	All	0
ORF1ab/nsp5A-B	234	A234del2	GCt	--t	1	2	All	0
ORF1ab/nsp5A-B	234	A234del2	gCT	g--	1	2	All	0
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.101	0.000981
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	2	2	AY.103	0.000012
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.106	0.00067
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.113	0.000285
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.116	0.000574
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	2	2	AY.119	0.000071
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.14	0.000176
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.2	0.000712
ORF1ab/nsp5A-B	234	A234T	Gct	Act	2	2	AY.29	0.000032
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.29.1	0.000441
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	2	2	AY.3	0.00002
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	2	2	AY.39.1	0.000079
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.4.2.1	0.000298
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.4.5	0.000215
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	2	2	AY.43	0.000009
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.45	0.000243
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.46	0.000208
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.46.4	0.000329
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.47	0.000062
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.52	0.001629
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.53	0.000575
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.54	0.000191
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.60	0.001876
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.68	0.000547
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.7.2	0.001119
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.71	0.00095
ORF1ab/nsp5A-B	234	A234del	GCT	---	2	2	AY.9	0.000135
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.9	0.000135
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.9.2	0.000073
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	AY.98	0.000158
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	2	2	AY.98	0.000158
ORF1ab/nsp5A-B	234	A234T	Gct	Act	2	2	AY.98.1	0.000097
ORF1ab/nsp5A-B	234	A234T	Gct	Act	2	2	B.1	0.000018
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	2	2	B.1	0.000018
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.1.153	0.002191
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.1.168	0.052632
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	2	2	B.1.1.25	0.001137
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.1.25	0.001137
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.1.326	0.003521
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.1.333	0.002153
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.1.355	0.030769
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.1.369	0.000892
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.1.409	0.005666
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	2	2	B.1.1.409	0.005666
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	2	2	B.1.1.432	0.002532
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.1.462	0.017241
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.157	0.00597
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	2	2	B.1.160	0.000062
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	2	2	B.1.177	0.000026
ORF1ab/nsp5A-B	234	A234del	GCT	---	2	2	B.1.177.87	0.001456
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.177.9	0.002663
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.223	0.005556
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.234	0.000264
ORF1ab/nsp5A-B	234	A234T	Gct	Act	2	2	B.1.351	0.000059
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.36.29	0.001035
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.409	0.001563
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.416	0.002538
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	2	2	B.1.427	0.000101
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.438.1	0.000215
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.561	0.000794
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.571	0.019417
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.576	0.001813
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.598	0.033898
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.617.3	0.00597
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.621.1	0.001012
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	B.1.623	0.001073
ORF1ab/nsp5A-B	234	A234T	Gct	Act	2	2	C.16	0.002121
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	2	2	C.36.3	0.001134
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	C.38	0.016129
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	2	2	Y.1	0.025641
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	A	0.000387
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	A	0.000387
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	A.1	0.000282
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	A.23.1	0.000704
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AH.3	0.003802
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AL.1	0.012987
ORF1ab/nsp5A-B	234	A234Y	GCt	TAt	1	1	All	0
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AU.2	0.002421
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	1	1	AY.102	0.000027
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	1	1	AY.102	0.000027
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.105	0.000643
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	1	1	AY.107	0.000466
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.108	0.001103
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.110	0.000113
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	1	1	AY.113	0.000142
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	AY.120	0.000037
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	AY.120	0.000037
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.120.2.1	0.000498
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	AY.13	0.000161
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.19	0.00114
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	1	1	AY.23	0.00007
ORF1ab/nsp5A-B	234	A234A	gcT	gcA	1	1	AY.24	0.000431
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	AY.25	0.000006
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	1	1	AY.25	0.000006
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	1	1	AY.29	0.000016
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	1	1	AY.33	0.000067
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	AY.33	0.000067
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.34	0.000097
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.35	0.000233
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	AY.37	0.000316
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.37	0.000316
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	1	1	AY.39	0.000025
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.40	0.000964
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.41	0.000294
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	AY.42	0.00004
ORF1ab/nsp5A-B	234	A234D	gCt	gAt	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	234	A234del1	gcT	gc-	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	234	A234del1	gcT	gc-	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	AY.46	0.000104
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.46.2	0.000635
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	AY.46.6	0.000072
ORF1ab/nsp5A-B	234	A234D	gCt	gAt	1	1	AY.47	0.000031
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	AY.5	0.000021
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	1	1	AY.5	0.000021
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	1	1	AY.5.4	0.000277
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.5.4	0.000277
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.51	0.000909
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	AY.54	0.000095
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	AY.54	0.000095
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	AY.6	0.000041
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	AY.60	0.000938
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	1	1	AY.61	0.000105
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.62	0.000436
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.67	0.000464
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.7.1	0.000113
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.70	0.000209
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.80	0.001129
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	AY.81	0.001992
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.85	0.000427
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.88	0.000884
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.91	0.00073
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AY.93	0.000273
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	AY.99.2	0.000092
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	AZ.2	0.000821
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	B	0.000128
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	B.1	0.000009
ORF1ab/nsp5A-B	234	A234G	gCt	gGt	1	1	B.1	0.000009
ORF1ab/nsp5A-B	234	A234N	GCt	AAt	1	1	B.1	0.000009
ORF1ab/nsp5A-B	234	A234del1	gCt	g-t	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.10	0.001115
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.141	0.002012
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.16	0.055556
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.161	0.003534
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.174	0.003378
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.187	0.00885
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	B.1.1.214	0.000055
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.220	0.001859
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.229	0.005747
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.237	0.005405
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.243	0.004082
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.244	0.015385
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.255	0.00303
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	1	1	B.1.1.263	0.001558
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.272	0.005208
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.280	0.003086
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.297	0.002237
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.301	0.001179
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.348	0.000796
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.354	0.004386
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.377	0.001381
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.383	0.0625
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.413	0.006897
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.44	0.00241
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.46	0.004367
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	1	1	B.1.1.46	0.004367
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.465	0.015625
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.486	0.001577
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	B.1.1.526	0.003546
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.54	0.003021
ORF1ab/nsp5A-B	234	A234N	GCt	AAt	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	234	A234P	Gct	Cct	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	234	A234del2	GCt	--t	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	234	A234del1	gcT	gc-	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.70	0.000341
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.1.72	0.030303
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.126	0.001276
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	1	1	B.1.157	0.002985
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.177.20	0.001517
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	1	1	B.1.177.21	0.000076
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.177.33	0.001645
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.177.42	0.000894
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.177.43	0.001477
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.177.52	0.001757
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	B.1.177.55	0.002331
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	B.1.177.6	0.000977
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.177.60	0.000218
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	1	1	B.1.177.7	0.000165
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	B.1.177.76	0.002494
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	B.1.177.81	0.000189
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.189	0.004292
ORF1ab/nsp5A-B	234	A234D	gCt	gAt	1	1	B.1.194	0.04
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.195	0.005025
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.206	0.000816
ORF1ab/nsp5A-B	234	A234del2	gCT	g--	1	1	B.1.218	0.005155
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.229	0.009709
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.239	0.001221
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	B.1.240	0.000216
ORF1ab/nsp5A-B	234	A234A	gcT	gcG	1	1	B.1.243	0.00007
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	B.1.258	0.000067
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.258.11	0.000396
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	B.1.258.17	0.000104
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.258.3	0.001675
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	B.1.258.7	0.001912
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.306	0.005714
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	B.1.311	0.000275
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.332	0.003497
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.349	0.000715
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.351	0.00003
ORF1ab/nsp5A-B	234	A234D	gCt	gAt	1	1	B.1.351.3	0.000876
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	B.1.36	0.000146
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.36.10	0.004785
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.36.16	0.001425
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	B.1.36.19	0.009259
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.36.22	0.001208
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.36.24	0.006173
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	B.1.36.29	0.000517
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.36.36	0.000602
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.367	0.000792
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.369	0.000285
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.375	0.00082
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.390	0.010638
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.397	0.004854
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.428	0.00102
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	B.1.429	0.000024
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	1	1	B.1.429	0.000024
ORF1ab/nsp5A-B	234	A234P	Gct	Cct	1	1	B.1.429	0.000024
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	1	1	B.1.429	0.000024
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.433	0.003195
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.436	0.001029
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	1	1	B.1.441	0.009615
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.456	0.003268
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.466	0.023256
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.469	0.00361
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.480	0.002488
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.499	0.00105
ORF1ab/nsp5A-B	234	A234A	gcT	gcG	1	1	B.1.503	0.002488
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.509	0.000866
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.525	0.000113
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.526	0.000024
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.538	0.008065
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	1	1	B.1.558	0.004566
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.574	0.002151
ORF1ab/nsp5A-B	234	A234Y	GCt	TAt	1	1	B.1.577	0.000687
ORF1ab/nsp5A-B	234	A234F	GCt	TTt	1	1	B.1.577	0.000687
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.600	0.005848
ORF1ab/nsp5A-B	234	A234A	gcT	gcC	1	1	B.1.609	0.000479
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.609	0.000479
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	1	1	B.1.617.1	0.000129
ORF1ab/nsp5A-B	234	A234del1	gcT	gc-	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	234	A234G	gCT	gGC	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	1	1	B.1.621	0.000089
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.628	0.000352
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.637	0.000073
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.1.91	0.002075
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	1	1	B.35	0.007812
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.39	0.002331
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.4	0.002208
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.40	0.000364
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	B.6	0.00091
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	B.61	0.005747
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	C.16	0.00106
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	C.2.1	0.006667
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	C.36	0.000911
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	D.2	0.000075
ORF1ab/nsp5A-B	234	A234G	gCt	gGt	1	1	D.2	0.000075
ORF1ab/nsp5A-B	234	A234S	Gct	Tct	1	1	D.3	0.005917
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	N.2	0.038462
ORF1ab/nsp5A-B	234	A234del	GCT	---	1	1	N.4	0.004255
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	P.1.13	0.000898
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	P.1.15	0.000232
ORF1ab/nsp5A-B	234	A234T	Gct	Act	1	1	Q.1	0.000126
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	Q.3	0.000145
ORF1ab/nsp5A-B	234	A234V	gCt	gTt	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.