CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 233 | V233V | V3496V | syn | gtG | gtT | 1259 | 971 | 0.771247 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233V | V3496V | syn | gtG | gtA | 1259 | 287 | 0.227959 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233V | V3496V | syn | gtG | gtC | 1259 | 1 | 0.000794281 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233M | V3496M | nonsyn | Gtg | Atg | 575 | 575 | 1 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233A | V3496A | nonsyn | gTg | gCg | 144 | 144 | 1 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233del | V3496del | del | GTG | --- | 45 | 45 | 1 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233L | V3496L | nonsyn | Gtg | Ttg | 34 | 29 | 0.852941 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233L | V3496L | nonsyn | Gtg | Ctg | 34 | 4 | 0.117647 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233L | V3496L | nonsyn | GtG | TtA | 34 | 1 | 0.0294118 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233E | V3496E | nonsyn | gTg | gAg | 7 | 7 | 1 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233G | V3496G | nonsyn | gTg | gGg | 3 | 3 | 1 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233K | V3496K | nonsyn | GTg | AAg | 3 | 2 | 0.666667 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233K | V3496K | nonsyn | GTG | AAA | 3 | 1 | 0.333333 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233R | V3496R | nonsyn | GTg | AGg | 2 | 2 | 1 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233del1 | V3496del1 | del | Gtg | -tg | 2 | 1 | 0.5 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233del1 | V3496del1 | del | gtG | gt- | 2 | 1 | 0.5 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233Q | V3496Q | nonsyn | GTG | CAA | 1 | 1 | 1 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233I | V3496I | nonsyn | GtG | AtA | 1 | 1 | 1 | 10751-10753 |
ORF1ab/nsp5A-B | 233 | V233F | V3496F | nonsyn | GtG | TtT | 1 | 1 | 1 | 10751-10753 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 971 | 1259 | All | 0.000186 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 287 | 1259 | All | 0.000055 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtC | 1 | 1259 | All | 0 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 575 | 575 | All | 0.00011 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 568 | 568 | B.1.526 | 0.013351 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 264 | 264 | AY.25 | 0.001588 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 171 | 213 | B.1.1.7 | 0.000153 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 42 | 213 | B.1.1.7 | 0.000038 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 144 | 144 | All | 0.000028 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 120 | 120 | AY.6 | 0.004935 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 110 | 119 | AY.4 | 0.000171 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 9 | 119 | AY.4 | 0.000014 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 67 | 70 | AY.25 | 0.000403 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 3 | 70 | AY.25 | 0.000018 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 59 | 59 | B.1.444 | 0.936508 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 45 | 45 | All | 0.000009 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 29 | 34 | All | 0.000006 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ctg | 4 | 34 | All | 0.000001 |
ORF1ab/nsp5A-B | 233 | V233L | GtG | TtA | 1 | 34 | All | 0 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 34 | 34 | P.1.14 | 0.001625 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 29 | 29 | AY.3 | 0.000288 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 21 | 28 | B.1.617.2 | 0.000079 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 6 | 28 | B.1.617.2 | 0.000023 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtC | 1 | 28 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 12 | 23 | B.1 | 0.00011 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 11 | 23 | B.1 | 0.000101 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 22 | 23 | B.1.575 | 0.006675 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 23 | B.1.575 | 0.000303 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 22 | 22 | B.1.1 | 0.000399 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 22 | 22 | B.1.221 | 0.001563 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 21 | 21 | AY.25 | 0.000126 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 19 | 19 | B.1.466.2 | 0.007433 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 12 | 12 | B.1.429 | 0.000282 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 8 | 9 | B.1.177 | 0.000105 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 9 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 6 | 8 | AY.44 | 0.000037 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 2 | 8 | AY.44 | 0.000012 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 6 | 8 | P.1 | 0.000095 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 2 | 8 | P.1 | 0.000032 |
ORF1ab/nsp5A-B | 233 | V233E | gTg | gAg | 7 | 7 | All | 0.000001 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 5 | 7 | AY.3 | 0.00005 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 2 | 7 | AY.3 | 0.00002 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 3 | 5 | AY.43 | 0.000013 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 2 | 5 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 5 | 5 | B.1.177.32 | 0.006748 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp5A-B | 233 | V233G | gTg | gGg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp5A-B | 233 | V233K | GTg | AAg | 2 | 3 | All | 0 |
ORF1ab/nsp5A-B | 233 | V233K | GTG | AAA | 1 | 3 | All | 0 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 2 | 3 | AY.16.1 | 0.00094 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 3 | AY.16.1 | 0.00047 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 2 | 3 | AY.20 | 0.000078 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 3 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 2 | 3 | B.1.160 | 0.000062 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 3 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 3 | 3 | B.1.320 | 0.003736 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp5A-B | 233 | V233R | GTg | AGg | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 233 | V233K | GTg | AAg | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 233 | V233R | GTg | AGg | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 233 | V233del1 | Gtg | -tg | 1 | 2 | All | 0 |
ORF1ab/nsp5A-B | 233 | V233del1 | gtG | gt- | 1 | 2 | All | 0 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp5A-B | 233 | V233L | GtG | TtA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ctg | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp5A-B | 233 | V233I | GtG | AtA | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 233 | V233Q | GTG | CAA | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 233 | V233F | GtG | TtT | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ctg | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ctg | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 233 | V233del1 | gtG | gt- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp5A-B | 233 | V233G | gTg | gGg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 233 | V233Q | GTG | CAA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp5A-B | 233 | V233E | gTg | gAg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | B.1.1.379 | 0.03125 |
ORF1ab/nsp5A-B | 233 | V233del1 | Gtg | -tg | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp5A-B | 233 | V233G | gTg | gGg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ctg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp5A-B | 233 | V233E | gTg | gAg | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp5A-B | 233 | V233G | gTg | gGg | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 233 | V233I | GtG | AtA | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp5A-B | 233 | V233E | gTg | gAg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp5A-B | 233 | V233E | gTg | gAg | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp5A-B | 233 | V233F | GtG | TtT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp5A-B | 233 | V233E | gTg | gAg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp5A-B | 233 | V233E | gTg | gAg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 233 | V233E | gTg | gAg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 233 | V233K | GTG | AAA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp5A-B | 233 | V233A | gTg | gCg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 233 | V233del | GTG | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp5A-B | 233 | V233M | Gtg | Atg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp5A-B | 233 | V233L | Gtg | Ttg | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtA | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp5A-B | 233 | V233V | gtG | gtT | 1 | 1 | Q.8 | 0.000165 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|