CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 228

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B228N228NN3491NsynaaTaaC950950110736-10738
ORF1ab/nsp5A-B228N228SN3491SnonsynaAtaGt321321110736-10738
ORF1ab/nsp5A-B228N228KN3491KnonsynaaTaaA1421120.78873210736-10738
ORF1ab/nsp5A-B228N228KN3491KnonsynaaTaaG142300.21126810736-10738
ORF1ab/nsp5A-B228N228delN3491deldelAAT---4545110736-10738
ORF1ab/nsp5A-B228N228TN3491TnonsynaAtaCt2424110736-10738
ORF1ab/nsp5A-B228N228YN3491YnonsynAatTat2323110736-10738
ORF1ab/nsp5A-B228N228DN3491DnonsynAatGat44110736-10738
ORF1ab/nsp5A-B228N228IN3491InonsynaAtaTt44110736-10738
ORF1ab/nsp5A-B228N228del1N3491del1delAat-at430.7510736-10738
ORF1ab/nsp5A-B228N228del1N3491del1delAAt-Gt410.2510736-10738
ORF1ab/nsp5A-B228N228HN3491HnonsynAatCat22110736-10738
ORF1ab/nsp5A-B228N228del2N3491del2delaATa--11110736-10738

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B228N228NaaTaaC950950All0.000182
ORF1ab/nsp5A-B228N228NaaTaaC424424AY.40.00066
ORF1ab/nsp5A-B228N228NaaTaaC342342B.1.1.70.000306
ORF1ab/nsp5A-B228N228SaAtaGt321321All0.000061
ORF1ab/nsp5A-B228N228KaaTaaA112142All0.000021
ORF1ab/nsp5A-B228N228KaaTaaG30142All0.000006
ORF1ab/nsp5A-B228N228SaAtaGt140140B.1.5440.843373
ORF1ab/nsp5A-B228N228SaAtaGt6666AY.330.004407
ORF1ab/nsp5A-B228N228delAAT---4545All0.000009
ORF1ab/nsp5A-B228N228KaaTaaA3842B.1.1770.0005
ORF1ab/nsp5A-B228N228KaaTaaG442B.1.1770.000053
ORF1ab/nsp5A-B228N228KaaTaaA3232B.10.000293
ORF1ab/nsp5A-B228N228SaAtaGt3131B.1.20.000273
ORF1ab/nsp5A-B228N228KaaTaaG2229B.1.1.70.00002
ORF1ab/nsp5A-B228N228KaaTaaA729B.1.1.70.000006
ORF1ab/nsp5A-B228N228TaAtaCt2424All0.000005
ORF1ab/nsp5A-B228N228YAatTat2323All0.000004
ORF1ab/nsp5A-B228N228NaaTaaC2020AY.440.000122
ORF1ab/nsp5A-B228N228NaaTaaC1919AY.610.001991
ORF1ab/nsp5A-B228N228NaaTaaC1717AY.39.10.000673
ORF1ab/nsp5A-B228N228delAAT---1717B.1.1.70.000015
ORF1ab/nsp5A-B228N228YAatTat1616B.1.1.70.000014
ORF1ab/nsp5A-B228N228NaaTaaC1616B.1.4290.000376
ORF1ab/nsp5A-B228N228NaaTaaC1111AY.1180.000689
ORF1ab/nsp5A-B228N228SaAtaGt1111B.1.1.70.00001
ORF1ab/nsp5A-B228N228KaaTaaA1111B.1.177.810.002083
ORF1ab/nsp5A-B228N228NaaTaaC1010B.1.617.20.000038
ORF1ab/nsp5A-B228N228SaAtaGt99AY.250.000054
ORF1ab/nsp5A-B228N228SaAtaGt99B.10.000082
ORF1ab/nsp5A-B228N228NaaTaaC99B.10.000082
ORF1ab/nsp5A-B228N228SaAtaGt77AY.40.000011
ORF1ab/nsp5A-B228N228NaaTaaC77B.1.20.000062
ORF1ab/nsp5A-B228N228NaaTaaC66AY.1030.000037
ORF1ab/nsp5A-B228N228SaAtaGt66AY.440.000037
ORF1ab/nsp5A-B228N228SaAtaGt66AY.5.40.00166
ORF1ab/nsp5A-B228N228NaaTaaC55AY.250.00003
ORF1ab/nsp5A-B228N228delAAT---55AY.40.000008
ORF1ab/nsp5A-B228N228NaaTaaC55B.1.10.000091
ORF1ab/nsp5A-B228N228KaaTaaA55B.1.10.000091
ORF1ab/nsp5A-B228N228IaAtaTt44All0.000001
ORF1ab/nsp5A-B228N228DAatGat44All0.000001
ORF1ab/nsp5A-B228N228del1Aat-at34All0.000001
ORF1ab/nsp5A-B228N228del1AAt-Gt14All0
ORF1ab/nsp5A-B228N228NaaTaaC44AY.30.00004
ORF1ab/nsp5A-B228N228TaAtaCt44B.1.1.70.000004
ORF1ab/nsp5A-B228N228NaaTaaC44B.1.5960.000349
ORF1ab/nsp5A-B228N228NaaTaaC44P.10.000063
ORF1ab/nsp5A-B228N228SaAtaGt33AY.1030.000019
ORF1ab/nsp5A-B228N228SaAtaGt33AY.30.00003
ORF1ab/nsp5A-B228N228YAatTat33AY.40.000005
ORF1ab/nsp5A-B228N228delAAT---33AY.4.50.000322
ORF1ab/nsp5A-B228N228NaaTaaC33AY.430.000013
ORF1ab/nsp5A-B228N228TaAtaCt33B0.000383
ORF1ab/nsp5A-B228N228TaAtaCt33B.10.000027
ORF1ab/nsp5A-B228N228IaAtaTt33B.10.000027
ORF1ab/nsp5A-B228N228NaaTaaC33B.1.1600.000094
ORF1ab/nsp5A-B228N228delAAT---33B.1.1770.00004
ORF1ab/nsp5A-B228N228KaaTaaA33B.1.617.20.000011
ORF1ab/nsp5A-B228N228delAAT---220.111111
ORF1ab/nsp5A-B228N228HAatCat22All0
ORF1ab/nsp5A-B228N228NaaTaaC22AY.100.00106
ORF1ab/nsp5A-B228N228SaAtaGt22AY.1180.000125
ORF1ab/nsp5A-B228N228SaAtaGt22AY.290.000032
ORF1ab/nsp5A-B228N228NaaTaaC22AY.420.00008
ORF1ab/nsp5A-B228N228KaaTaaA22AY.430.000009
ORF1ab/nsp5A-B228N228SaAtaGt22AY.450.000243
ORF1ab/nsp5A-B228N228NaaTaaC22AY.480.00093
ORF1ab/nsp5A-B228N228NaaTaaC22AY.90.000135
ORF1ab/nsp5A-B228N228SaAtaGt22B.1.10.000036
ORF1ab/nsp5A-B228N228NaaTaaC22B.1.1.3510.005587
ORF1ab/nsp5A-B228N228NaaTaaC22B.1.1.5190.000079
ORF1ab/nsp5A-B228N228HAatCat22B.1.1.70.000002
ORF1ab/nsp5A-B228N228KaaTaaG22B.1.1.700.000682
ORF1ab/nsp5A-B228N228KaaTaaG12B.1.1390.000733
ORF1ab/nsp5A-B228N228KaaTaaA12B.1.1390.000733
ORF1ab/nsp5A-B228N228KaaTaaA22B.1.177.730.001133
ORF1ab/nsp5A-B228N228NaaTaaC22B.1.2370.00995
ORF1ab/nsp5A-B228N228SaAtaGt22B.1.617.20.000008
ORF1ab/nsp5A-B228N228SaAtaGt22P.20.000373
ORF1ab/nsp5A-B228N228NaaTaaC11A.2.50.000499
ORF1ab/nsp5A-B228N228NaaTaaC11AD.20.000219
ORF1ab/nsp5A-B228N228del2aATa--11All0
ORF1ab/nsp5A-B228N228NaaTaaC11AY.1020.000027
ORF1ab/nsp5A-B228N228SaAtaGt11AY.1020.000027
ORF1ab/nsp5A-B228N228YAatTat11AY.1030.000006
ORF1ab/nsp5A-B228N228SaAtaGt11AY.1140.000231
ORF1ab/nsp5A-B228N228NaaTaaC11AY.1190.000035
ORF1ab/nsp5A-B228N228delAAT---11AY.1200.000037
ORF1ab/nsp5A-B228N228NaaTaaC11AY.1200.000037
ORF1ab/nsp5A-B228N228TaAtaCt11AY.1200.000037
ORF1ab/nsp5A-B228N228TaAtaCt11AY.120.10.000321
ORF1ab/nsp5A-B228N228delAAT---11AY.250.000006
ORF1ab/nsp5A-B228N228KaaTaaA11AY.250.000006
ORF1ab/nsp5A-B228N228KaaTaaA11AY.30.00001
ORF1ab/nsp5A-B228N228DAatGat11AY.30.00001
ORF1ab/nsp5A-B228N228NaaTaaC11AY.3.10.000085
ORF1ab/nsp5A-B228N228NaaTaaC11AY.340.000097
ORF1ab/nsp5A-B228N228NaaTaaC11AY.360.000148
ORF1ab/nsp5A-B228N228DAatGat11AY.40.000002
ORF1ab/nsp5A-B228N228del1Aat-at11AY.40.000002
ORF1ab/nsp5A-B228N228KaaTaaG11AY.40.000002
ORF1ab/nsp5A-B228N228TaAtaCt11AY.40.000002
ORF1ab/nsp5A-B228N228NaaTaaC11AY.4.20.000022
ORF1ab/nsp5A-B228N228NaaTaaC11AY.4.2.10.000149
ORF1ab/nsp5A-B228N228TaAtaCt11AY.4.50.000107
ORF1ab/nsp5A-B228N228delAAT---11AY.430.000004
ORF1ab/nsp5A-B228N228SaAtaGt11AY.430.000004
ORF1ab/nsp5A-B228N228NaaTaaC11AY.470.000031
ORF1ab/nsp5A-B228N228KaaTaaA11AY.50.000021
ORF1ab/nsp5A-B228N228NaaTaaC11AY.540.000095
ORF1ab/nsp5A-B228N228SaAtaGt11AY.60.000041
ORF1ab/nsp5A-B228N228NaaTaaC11AY.630.000387
ORF1ab/nsp5A-B228N228NaaTaaC11AY.7.10.000113
ORF1ab/nsp5A-B228N228NaaTaaC11AY.770.001127
ORF1ab/nsp5A-B228N228delAAT---11AY.810.001992
ORF1ab/nsp5A-B228N228SaAtaGt11AY.870.000833
ORF1ab/nsp5A-B228N228YAatTat11AY.880.000884
ORF1ab/nsp5A-B228N228delAAT---11AY.90.000068
ORF1ab/nsp5A-B228N228SaAtaGt11AY.940.000443
ORF1ab/nsp5A-B228N228NaaTaaC11AY.980.000079
ORF1ab/nsp5A-B228N228TaAtaCt11AY.980.000079
ORF1ab/nsp5A-B228N228NaaTaaC11B0.000128
ORF1ab/nsp5A-B228N228delAAT---11B.10.000009
ORF1ab/nsp5A-B228N228DAatGat11B.10.000009
ORF1ab/nsp5A-B228N228YAatTat11B.1.10.000018
ORF1ab/nsp5A-B228N228del1Aat-at11B.1.10.000018
ORF1ab/nsp5A-B228N228del2aATa--11B.1.10.000018
ORF1ab/nsp5A-B228N228KaaTaaA11B.1.1.3060.000438
ORF1ab/nsp5A-B228N228TaAtaCt11B.1.1.3220.008772
ORF1ab/nsp5A-B228N228SaAtaGt11B.1.1.330.000421
ORF1ab/nsp5A-B228N228TaAtaCt11B.1.1.370.000193
ORF1ab/nsp5A-B228N228SaAtaGt11B.1.1.370.000193
ORF1ab/nsp5A-B228N228DAatGat11B.1.1.70.000001
ORF1ab/nsp5A-B228N228SaAtaGt11B.1.1310.008772
ORF1ab/nsp5A-B228N228TaAtaCt11B.1.1770.000013
ORF1ab/nsp5A-B228N228NaaTaaC11B.1.1770.000013
ORF1ab/nsp5A-B228N228NaaTaaC11B.1.177.100.000878
ORF1ab/nsp5A-B228N228delAAT---11B.1.177.160.000664
ORF1ab/nsp5A-B228N228NaaTaaC11B.1.177.210.000076
ORF1ab/nsp5A-B228N228delAAT---11B.1.177.40.000211
ORF1ab/nsp5A-B228N228delAAT---11B.1.177.570.000281
ORF1ab/nsp5A-B228N228delAAT---11B.1.177.60.000977
ORF1ab/nsp5A-B228N228SaAtaGt11B.1.177.600.000218
ORF1ab/nsp5A-B228N228delAAT---11B.1.177.760.002494
ORF1ab/nsp5A-B228N228SaAtaGt11B.1.177.80.000752
ORF1ab/nsp5A-B228N228delAAT---11B.1.177.870.000728
ORF1ab/nsp5A-B228N228del1AAt-Gt11B.1.20.000009
ORF1ab/nsp5A-B228N228YAatTat11B.1.20.000009
ORF1ab/nsp5A-B228N228KaaTaaA11B.1.2210.000071
ORF1ab/nsp5A-B228N228KaaTaaA11B.1.2220.001692
ORF1ab/nsp5A-B228N228NaaTaaC11B.1.2320.000537
ORF1ab/nsp5A-B228N228SaAtaGt11B.1.2430.00007
ORF1ab/nsp5A-B228N228TaAtaCt11B.1.2430.00007
ORF1ab/nsp5A-B228N228delAAT---11B.1.2580.000067
ORF1ab/nsp5A-B228N228NaaTaaC11B.1.2580.000067
ORF1ab/nsp5A-B228N228NaaTaaC11B.1.3500.002933
ORF1ab/nsp5A-B228N228KaaTaaA11B.1.3510.00003
ORF1ab/nsp5A-B228N228NaaTaaC11B.1.3510.00003
ORF1ab/nsp5A-B228N228SaAtaGt11B.1.3690.000285
ORF1ab/nsp5A-B228N228KaaTaaA11B.1.3750.00082
ORF1ab/nsp5A-B228N228TaAtaCt11B.1.4160.001269
ORF1ab/nsp5A-B228N228SaAtaGt11B.1.4270.00005
ORF1ab/nsp5A-B228N228NaaTaaC11B.1.438.10.000107
ORF1ab/nsp5A-B228N228TaAtaCt11B.1.466.20.000391
ORF1ab/nsp5A-B228N228SaAtaGt11B.1.5800.004065
ORF1ab/nsp5A-B228N228SaAtaGt11B.1.5900.004545
ORF1ab/nsp5A-B228N228NaaTaaC11B.1.617.10.000129
ORF1ab/nsp5A-B228N228TaAtaCt11B.1.617.20.000004
ORF1ab/nsp5A-B228N228delAAT---11B.1.617.20.000004
ORF1ab/nsp5A-B228N228IaAtaTt11B.1.617.20.000004
ORF1ab/nsp5A-B228N228TaAtaCt11B.1.6210.000089
ORF1ab/nsp5A-B228N228KaaTaaA11B.1.6270.00202
ORF1ab/nsp5A-B228N228NaaTaaC11B.1.6280.000352
ORF1ab/nsp5A-B228N228del1Aat-at11B.1.6370.000073
ORF1ab/nsp5A-B228N228TaAtaCt11B.550.00295
ORF1ab/nsp5A-B228N228SaAtaGt11C.10.002392
ORF1ab/nsp5A-B228N228SaAtaGt11C.370.000116
ORF1ab/nsp5A-B228N228KaaTaaA11K.10.02381
ORF1ab/nsp5A-B228N228delAAT---11N.40.004255
ORF1ab/nsp5A-B228N228KaaTaaA11Q.10.000126