CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 224

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B224T224TT3487TsynacCacT149213600.91152810724-10726
ORF1ab/nsp5A-B224T224TT3487TsynacCacA14921290.086461110724-10726
ORF1ab/nsp5A-B224T224TT3487TsynacCacG149230.0020107210724-10726
ORF1ab/nsp5A-B224T224IT3487InonsynaCcaTc2922900.99315110724-10726
ORF1ab/nsp5A-B224T224IT3487InonsynaCCaTT29220.0068493210724-10726
ORF1ab/nsp5A-B224T224AT3487AnonsynAccGcc105105110724-10726
ORF1ab/nsp5A-B224T224NT3487NnonsynaCcaAc80790.987510724-10726
ORF1ab/nsp5A-B224T224NT3487NnonsynaCCaAT8010.012510724-10726
ORF1ab/nsp5A-B224T224delT3487deldelACC---4343110724-10726
ORF1ab/nsp5A-B224T224ST3487SnonsynAccTcc760.85714310724-10726
ORF1ab/nsp5A-B224T224ST3487SnonsynaCcaGc710.14285710724-10726
ORF1ab/nsp5A-B224T224del1T3487del1delacCac-33110724-10726
ORF1ab/nsp5A-B224T224HT3487HnonsynACCCAT11110724-10726
ORF1ab/nsp5A-B224T224PT3487PnonsynAccCcc11110724-10726

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B224T224TacCacT13601492All0.00026
ORF1ab/nsp5A-B224T224TacCacA1291492All0.000025
ORF1ab/nsp5A-B224T224TacCacG31492All0.000001
ORF1ab/nsp5A-B224T224TacCacT363430B.1.1.70.000325
ORF1ab/nsp5A-B224T224TacCacA67430B.1.1.70.00006
ORF1ab/nsp5A-B224T224IaCcaTc290292All0.000055
ORF1ab/nsp5A-B224T224IaCCaTT2292All0
ORF1ab/nsp5A-B224T224TacCacT234234B.1.5750.070995
ORF1ab/nsp5A-B224T224TacCacT134134AY.290.002114
ORF1ab/nsp5A-B224T224TacCacT113117AY.40.000176
ORF1ab/nsp5A-B224T224TacCacA2117AY.40.000003
ORF1ab/nsp5A-B224T224TacCacG2117AY.40.000003
ORF1ab/nsp5A-B224T224AAccGcc105105All0.00002
ORF1ab/nsp5A-B224T224TacCacT8181AY.250.000487
ORF1ab/nsp5A-B224T224NaCcaAc7980All0.000015
ORF1ab/nsp5A-B224T224NaCCaAT180All0
ORF1ab/nsp5A-B224T224IaCcaTc5656B.1.20.000493
ORF1ab/nsp5A-B224T224TacCacT4850B.1.20.000423
ORF1ab/nsp5A-B224T224TacCacA250B.1.20.000018
ORF1ab/nsp5A-B224T224delACC---4343All0.000008
ORF1ab/nsp5A-B224T224IaCcaTc4040B.1.5750.012136
ORF1ab/nsp5A-B224T224TacCacT3539B.1.617.20.000132
ORF1ab/nsp5A-B224T224TacCacA439B.1.617.20.000015
ORF1ab/nsp5A-B224T224TacCacT3338B.10.000302
ORF1ab/nsp5A-B224T224TacCacA538B.10.000046
ORF1ab/nsp5A-B224T224AAccGcc3838B.1.595.31
ORF1ab/nsp5A-B224T224TacCacT2630AY.430.000115
ORF1ab/nsp5A-B224T224TacCacA430AY.430.000018
ORF1ab/nsp5A-B224T224TacCacT3030AY.570.019685
ORF1ab/nsp5A-B224T224TacCacT2929P.1.140.001386
ORF1ab/nsp5A-B224T224TacCacT1722AY.1020.000451
ORF1ab/nsp5A-B224T224TacCacA522AY.1020.000133
ORF1ab/nsp5A-B224T224IaCcaTc2021AY.40.000031
ORF1ab/nsp5A-B224T224IaCCaTT121AY.40.000002
ORF1ab/nsp5A-B224T224TacCacT1820AY.390.000445
ORF1ab/nsp5A-B224T224TacCacA220AY.390.000049
ORF1ab/nsp5A-B224T224AAccGcc1919B.1.1.70.000017
ORF1ab/nsp5A-B224T224IaCcaTc1718B.1.617.20.000064
ORF1ab/nsp5A-B224T224IaCCaTT118B.1.617.20.000004
ORF1ab/nsp5A-B224T224IaCcaTc1515AY.250.00009
ORF1ab/nsp5A-B224T224delACC---1515B.1.1.70.000013
ORF1ab/nsp5A-B224T224TacCacA915B.1.4270.000454
ORF1ab/nsp5A-B224T224TacCacT615B.1.4270.000303
ORF1ab/nsp5A-B224T224IaCcaTc1414AY.430.000062
ORF1ab/nsp5A-B224T224IaCcaTc1313AY.1030.000081
ORF1ab/nsp5A-B224T224IaCcaTc1212AY.440.000073
ORF1ab/nsp5A-B224T224TacCacT1112B.1.1.5190.000437
ORF1ab/nsp5A-B224T224TacCacA112B.1.1.5190.00004
ORF1ab/nsp5A-B224T224NaCcaAc1111AY.1110.002015
ORF1ab/nsp5A-B224T224IaCcaTc1111AY.200.000428
ORF1ab/nsp5A-B224T224TacCacT1111AY.99.20.001014
ORF1ab/nsp5A-B224T224AAccGcc1111B.1.258.30.018425
ORF1ab/nsp5A-B224T224NaCcaAc1010AY.1030.000062
ORF1ab/nsp5A-B224T224TacCacA610AY.1030.000037
ORF1ab/nsp5A-B224T224TacCacT410AY.1030.000025
ORF1ab/nsp5A-B224T224TacCacT69B.1.4290.000141
ORF1ab/nsp5A-B224T224TacCacA39B.1.4290.000071
ORF1ab/nsp5A-B224T224TacCacT99B.1.4800.022388
ORF1ab/nsp5A-B224T224TacCacT78AY.440.000043
ORF1ab/nsp5A-B224T224TacCacA18AY.440.000006
ORF1ab/nsp5A-B224T224TacCacT78B.1.10.000127
ORF1ab/nsp5A-B224T224TacCacA18B.1.10.000018
ORF1ab/nsp5A-B224T224IaCcaTc88B.1.177.40.001688
ORF1ab/nsp5A-B224T224SAccTcc67All0.000001
ORF1ab/nsp5A-B224T224SaCcaGc17All0
ORF1ab/nsp5A-B224T224TacCacT67AY.50.000124
ORF1ab/nsp5A-B224T224TacCacA17AY.50.000021
ORF1ab/nsp5A-B224T224NaCcaAc77B.1.2430.000487
ORF1ab/nsp5A-B224T224TacCacT77B.1.3510.000208
ORF1ab/nsp5A-B224T224AAccGcc66AY.290.000095
ORF1ab/nsp5A-B224T224delACC---66AY.40.000009
ORF1ab/nsp5A-B224T224IaCcaTc66AY.50.000124
ORF1ab/nsp5A-B224T224IaCcaTc66B.10.000055
ORF1ab/nsp5A-B224T224TacCacT36B.1.1770.00004
ORF1ab/nsp5A-B224T224TacCacA36B.1.1770.00004
ORF1ab/nsp5A-B224T224TacCacT66P.10.000095
ORF1ab/nsp5A-B224T224IaCcaTc55AY.1020.000133
ORF1ab/nsp5A-B224T224AAccGcc55AY.1030.000031
ORF1ab/nsp5A-B224T224TacCacT55AY.16.10.00235
ORF1ab/nsp5A-B224T224TacCacT55AY.29.10.001103
ORF1ab/nsp5A-B224T224IaCcaTc55AY.390.000124
ORF1ab/nsp5A-B224T224NaCcaAc55AY.40.000008
ORF1ab/nsp5A-B224T224TacCacT55AY.750.00028
ORF1ab/nsp5A-B224T224TacCacT55AY.910.003652
ORF1ab/nsp5A-B224T224AAccGcc55B.1.20.000044
ORF1ab/nsp5A-B224T224NaCcaAc44AY.1000.000184
ORF1ab/nsp5A-B224T224TacCacT44AY.350.000932
ORF1ab/nsp5A-B224T224NaCcaAc34AY.440.000018
ORF1ab/nsp5A-B224T224NaCCaAT14AY.440.000006
ORF1ab/nsp5A-B224T224TacCacT34B0.000383
ORF1ab/nsp5A-B224T224TacCacA14B0.000128
ORF1ab/nsp5A-B224T224TacCacT44B.1.1.3480.003185
ORF1ab/nsp5A-B224T224NaCcaAc44B.1.1.70.000004
ORF1ab/nsp5A-B224T224IaCcaTc44B.1.5820.001963
ORF1ab/nsp5A-B224T224TacCacT44B.1.5960.000349
ORF1ab/nsp5A-B224T224NaCcaAc44B.1.617.20.000015
ORF1ab/nsp5A-B224T224NaCcaAc44C.36.30.002269
ORF1ab/nsp5A-B224T224TacCacT44P.1.170.000647
ORF1ab/nsp5A-B224T224del1acCac-33All0.000001
ORF1ab/nsp5A-B224T224TacCacT33AY.1000.000138
ORF1ab/nsp5A-B224T224IaCcaTc33AY.1200.000112
ORF1ab/nsp5A-B224T224TacCacA33AY.1210.000406
ORF1ab/nsp5A-B224T224TacCacT33AY.240.001293
ORF1ab/nsp5A-B224T224AAccGcc33AY.39.10.000119
ORF1ab/nsp5A-B224T224AAccGcc33AY.40.000005
ORF1ab/nsp5A-B224T224NaCcaAc33AY.4.30.002525
ORF1ab/nsp5A-B224T224delACC---33AY.4.50.000322
ORF1ab/nsp5A-B224T224TacCacT33AY.470.000093
ORF1ab/nsp5A-B224T224NaCcaAc33AY.670.001393
ORF1ab/nsp5A-B224T224TacCacT23B.1.1.370.000386
ORF1ab/nsp5A-B224T224TacCacA13B.1.1.370.000193
ORF1ab/nsp5A-B224T224TacCacT33B.1.1.3880.136364
ORF1ab/nsp5A-B224T224IaCcaTc33B.1.1.70.000003
ORF1ab/nsp5A-B224T224delACC---33B.1.1770.00004
ORF1ab/nsp5A-B224T224NaCcaAc33B.1.177.40.000633
ORF1ab/nsp5A-B224T224TacCacT33B.1.351.30.002629
ORF1ab/nsp5A-B224T224IaCcaTc33B.1.466.20.001174
ORF1ab/nsp5A-B224T224IaCcaTc33B.1.6120.007958
ORF1ab/nsp5A-B224T224AAccGcc33B.1.617.20.000011
ORF1ab/nsp5A-B224T224SAccTcc23D.20.00015
ORF1ab/nsp5A-B224T224SaCcaGc13D.20.000075
ORF1ab/nsp5A-B224T224TacCacA23Q.10.000253
ORF1ab/nsp5A-B224T224TacCacT13Q.10.000126
ORF1ab/nsp5A-B224T224del1acCac-220.111111
ORF1ab/nsp5A-B224T224TacCacT220.111111
ORF1ab/nsp5A-B224T224TacCacT22AY.160.000759
ORF1ab/nsp5A-B224T224IaCcaTc22AY.260.000057
ORF1ab/nsp5A-B224T224IaCcaTc22AY.30.00002
ORF1ab/nsp5A-B224T224TacCacT22AY.4.20.000043
ORF1ab/nsp5A-B224T224TacCacT22AY.420.00008
ORF1ab/nsp5A-B224T224AAccGcc22AY.430.000009
ORF1ab/nsp5A-B224T224TacCacT22AY.460.000208
ORF1ab/nsp5A-B224T224TacCacT22AY.860.00166
ORF1ab/nsp5A-B224T224TacCacA12AY.98.10.000048
ORF1ab/nsp5A-B224T224TacCacT12AY.98.10.000048
ORF1ab/nsp5A-B224T224IaCcaTc22B.1.10.000036
ORF1ab/nsp5A-B224T224IaCcaTc22B.1.1.1760.000879
ORF1ab/nsp5A-B224T224NaCcaAc22B.1.1.3060.000877
ORF1ab/nsp5A-B224T224IaCcaTc22B.1.1.4220.090909
ORF1ab/nsp5A-B224T224SAccTcc22B.1.1.70.000002
ORF1ab/nsp5A-B224T224TacCacT22B.1.1700.008621
ORF1ab/nsp5A-B224T224IaCcaTc22B.1.360.000292
ORF1ab/nsp5A-B224T224IaCcaTc22B.1.36.290.001035
ORF1ab/nsp5A-B224T224TacCacT22B.1.5950.000522
ORF1ab/nsp5A-B224T224delACC---22B.1.617.20.000008
ORF1ab/nsp5A-B224T224IaCcaTc22D.20.00015
ORF1ab/nsp5A-B224T224TacCacA11A0.000387
ORF1ab/nsp5A-B224T224NaCcaAc11A.20.000662
ORF1ab/nsp5A-B224T224TacCacT11AA.20.007692
ORF1ab/nsp5A-B224T224HACCCAT11All0
ORF1ab/nsp5A-B224T224PAccCcc11All0
ORF1ab/nsp5A-B224T224IaCcaTc11AY.1000.000046
ORF1ab/nsp5A-B224T224TacCacA11AY.1050.000643
ORF1ab/nsp5A-B224T224IaCcaTc11AY.1050.000643
ORF1ab/nsp5A-B224T224NaCcaAc11AY.1100.000113
ORF1ab/nsp5A-B224T224NaCcaAc11AY.1130.000142
ORF1ab/nsp5A-B224T224IaCcaTc11AY.1140.000231
ORF1ab/nsp5A-B224T224TacCacT11AY.1160.000287
ORF1ab/nsp5A-B224T224TacCacT11AY.1170.000085
ORF1ab/nsp5A-B224T224delACC---11AY.1200.000037
ORF1ab/nsp5A-B224T224TacCacT11AY.1200.000037
ORF1ab/nsp5A-B224T224IaCcaTc11AY.120.20.001285
ORF1ab/nsp5A-B224T224IaCcaTc11AY.1210.000135
ORF1ab/nsp5A-B224T224NaCcaAc11AY.16.10.00047
ORF1ab/nsp5A-B224T224TacCacT11AY.200.000039
ORF1ab/nsp5A-B224T224TacCacT11AY.230.00007
ORF1ab/nsp5A-B224T224TacCacT11AY.23.10.000417
ORF1ab/nsp5A-B224T224delACC---11AY.250.000006
ORF1ab/nsp5A-B224T224TacCacT11AY.260.000028
ORF1ab/nsp5A-B224T224AAccGcc11AY.29.10.000221
ORF1ab/nsp5A-B224T224AAccGcc11AY.30.00001
ORF1ab/nsp5A-B224T224TacCacT11AY.30.00001
ORF1ab/nsp5A-B224T224TacCacT11AY.3.10.000085
ORF1ab/nsp5A-B224T224NaCcaAc11AY.34.10.00051
ORF1ab/nsp5A-B224T224TacCacT11AY.360.000148
ORF1ab/nsp5A-B224T224AAccGcc11AY.390.000025
ORF1ab/nsp5A-B224T224NaCcaAc11AY.390.000025
ORF1ab/nsp5A-B224T224IaCcaTc11AY.39.10.00004
ORF1ab/nsp5A-B224T224TacCacT11AY.39.10.00004
ORF1ab/nsp5A-B224T224IaCcaTc11AY.39.20.001541
ORF1ab/nsp5A-B224T224IaCcaTc11AY.4.20.000022
ORF1ab/nsp5A-B224T224TacCacT11AY.4.2.10.000149
ORF1ab/nsp5A-B224T224TacCacT11AY.4.50.000107
ORF1ab/nsp5A-B224T224delACC---11AY.430.000004
ORF1ab/nsp5A-B224T224NaCcaAc11AY.430.000004
ORF1ab/nsp5A-B224T224IaCcaTc11AY.450.000122
ORF1ab/nsp5A-B224T224TacCacT11AY.450.000122
ORF1ab/nsp5A-B224T224IaCcaTc11AY.460.000104
ORF1ab/nsp5A-B224T224AAccGcc11AY.50.000021
ORF1ab/nsp5A-B224T224IaCcaTc11AY.5.30.000337
ORF1ab/nsp5A-B224T224IaCcaTc11AY.530.000288
ORF1ab/nsp5A-B224T224TacCacT11AY.600.000938
ORF1ab/nsp5A-B224T224IaCcaTc11AY.610.000105
ORF1ab/nsp5A-B224T224NaCcaAc11AY.610.000105
ORF1ab/nsp5A-B224T224TacCacT11AY.670.000464
ORF1ab/nsp5A-B224T224TacCacT11AY.690.000187
ORF1ab/nsp5A-B224T224IaCcaTc11AY.740.000116
ORF1ab/nsp5A-B224T224TacCacT11AY.75.10.00018
ORF1ab/nsp5A-B224T224HACCCAT11AY.790.001211
ORF1ab/nsp5A-B224T224delACC---11AY.810.001992
ORF1ab/nsp5A-B224T224NaCcaAc11AY.840.000437
ORF1ab/nsp5A-B224T224TacCacT11AY.90.000068
ORF1ab/nsp5A-B224T224delACC---11AY.90.000068
ORF1ab/nsp5A-B224T224NaCcaAc11AY.9.10.000084
ORF1ab/nsp5A-B224T224IaCcaTc11AY.900.000684
ORF1ab/nsp5A-B224T224IaCcaTc11AY.910.00073
ORF1ab/nsp5A-B224T224TacCacT11AY.980.000079
ORF1ab/nsp5A-B224T224TacCacG11AY.990.001049
ORF1ab/nsp5A-B224T224SAccTcc11B.10.000009
ORF1ab/nsp5A-B224T224PAccCcc11B.10.000009
ORF1ab/nsp5A-B224T224delACC---11B.10.000009
ORF1ab/nsp5A-B224T224AAccGcc11B.10.000009
ORF1ab/nsp5A-B224T224del1acCac-11B.10.000009
ORF1ab/nsp5A-B224T224delACC---11B.1.10.000018
ORF1ab/nsp5A-B224T224TacCacT11B.1.1.100.001115
ORF1ab/nsp5A-B224T224AAccGcc11B.1.1.1410.002012
ORF1ab/nsp5A-B224T224TacCacT11B.1.1.1760.000439
ORF1ab/nsp5A-B224T224TacCacT11B.1.1.2140.000055
ORF1ab/nsp5A-B224T224TacCacT11B.1.1.2910.000742
ORF1ab/nsp5A-B224T224NaCcaAc11B.1.1.3170.000412
ORF1ab/nsp5A-B224T224AAccGcc11B.1.1.3280.016949
ORF1ab/nsp5A-B224T224TacCacT11B.1.1.3490.010309
ORF1ab/nsp5A-B224T224TacCacT11B.1.1.3890.006061
ORF1ab/nsp5A-B224T224TacCacA11B.1.1.4320.001266
ORF1ab/nsp5A-B224T224IaCcaTc11B.1.1.460.004367
ORF1ab/nsp5A-B224T224TacCacT11B.1.1.4640.001473
ORF1ab/nsp5A-B224T224AAccGcc11B.1.1.5190.00004
ORF1ab/nsp5A-B224T224IaCcaTc11B.1.1.5250.005464
ORF1ab/nsp5A-B224T224TacCacT11B.1.110.30.000718
ORF1ab/nsp5A-B224T224IaCcaTc11B.1.1640.014925
ORF1ab/nsp5A-B224T224AAccGcc11B.1.1770.000013
ORF1ab/nsp5A-B224T224NaCcaAc11B.1.1770.000013
ORF1ab/nsp5A-B224T224delACC---11B.1.177.160.000664
ORF1ab/nsp5A-B224T224TacCacT11B.1.177.210.000076
ORF1ab/nsp5A-B224T224delACC---11B.1.177.40.000211
ORF1ab/nsp5A-B224T224TacCacT11B.1.177.420.000894
ORF1ab/nsp5A-B224T224delACC---11B.1.177.570.000281
ORF1ab/nsp5A-B224T224delACC---11B.1.177.60.000977
ORF1ab/nsp5A-B224T224TacCacT11B.1.177.70.000165
ORF1ab/nsp5A-B224T224delACC---11B.1.177.760.002494
ORF1ab/nsp5A-B224T224TacCacT11B.1.2210.000071
ORF1ab/nsp5A-B224T224IaCcaTc11B.1.2430.00007
ORF1ab/nsp5A-B224T224TacCacT11B.1.2580.000067
ORF1ab/nsp5A-B224T224delACC---11B.1.2580.000067
ORF1ab/nsp5A-B224T224IaCcaTc11B.1.3240.001605
ORF1ab/nsp5A-B224T224TacCacT11B.1.3460.001311
ORF1ab/nsp5A-B224T224NaCcaAc11B.1.360.000146
ORF1ab/nsp5A-B224T224TacCacT11B.1.36.120.009615
ORF1ab/nsp5A-B224T224TacCacT11B.1.36.370.002778
ORF1ab/nsp5A-B224T224NaCcaAc11B.1.3670.000792
ORF1ab/nsp5A-B224T224IaCcaTc11B.1.3690.000285
ORF1ab/nsp5A-B224T224AAccGcc11B.1.4270.00005
ORF1ab/nsp5A-B224T224SAccTcc11B.1.4290.000024
ORF1ab/nsp5A-B224T224IaCcaTc11B.1.4380.006536
ORF1ab/nsp5A-B224T224IaCcaTc11B.1.4710.002732
ORF1ab/nsp5A-B224T224IaCcaTc11B.1.4970.000315
ORF1ab/nsp5A-B224T224TacCacA11B.1.5050.004386
ORF1ab/nsp5A-B224T224IaCcaTc11B.1.5170.000427
ORF1ab/nsp5A-B224T224TacCacT11B.1.5400.009709
ORF1ab/nsp5A-B224T224TacCacT11B.1.5760.000907
ORF1ab/nsp5A-B224T224IaCcaTc11B.1.5870.001898
ORF1ab/nsp5A-B224T224IaCcaTc11B.1.5960.000087
ORF1ab/nsp5A-B224T224NaCcaAc11B.1.5960.000087
ORF1ab/nsp5A-B224T224IaCcaTc11B.1.6090.000479
ORF1ab/nsp5A-B224T224IaCcaTc11B.1.617.10.000129
ORF1ab/nsp5A-B224T224TacCacA11B.1.6230.000536
ORF1ab/nsp5A-B224T224TacCacT11C.170.055556
ORF1ab/nsp5A-B224T224TacCacT11C.370.000116
ORF1ab/nsp5A-B224T224TacCacT11D.50.004975
ORF1ab/nsp5A-B224T224delACC---11N.40.004255
ORF1ab/nsp5A-B224T224NaCcaAc11P.10.000016