CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 221

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B221N221SN3484SnonsynaAtaGt142514240.99929810715-10717
ORF1ab/nsp5A-B221N221SN3484SnonsynAAtTCt142510.00070175410715-10717
ORF1ab/nsp5A-B221N221NN3484NsynaaTaaC585585110715-10717
ORF1ab/nsp5A-B221N221HN3484HnonsynAatCat434434110715-10717
ORF1ab/nsp5A-B221N221delN3484deldelAAT---4747110715-10717
ORF1ab/nsp5A-B221N221DN3484DnonsynAatGat27250.92592610715-10717
ORF1ab/nsp5A-B221N221DN3484DnonsynAaTGaC2720.074074110715-10717
ORF1ab/nsp5A-B221N221TN3484TnonsynaAtaCt1818110715-10717
ORF1ab/nsp5A-B221N221YN3484YnonsynAatTat17150.88235310715-10717
ORF1ab/nsp5A-B221N221KN3484KnonsynaaTaaG17130.76470610715-10717
ORF1ab/nsp5A-B221N221KN3484KnonsynaaTaaA1740.23529410715-10717
ORF1ab/nsp5A-B221N221YN3484YnonsynAaTTaC1720.11764710715-10717
ORF1ab/nsp5A-B221N221IN3484InonsynaAtaTt430.7510715-10717
ORF1ab/nsp5A-B221N221FN3484FnonsynAAtTTt420.510715-10717
ORF1ab/nsp5A-B221N221FN3484FnonsynAATTTC420.510715-10717
ORF1ab/nsp5A-B221N221VN3484VnonsynAAtGTt420.510715-10717
ORF1ab/nsp5A-B221N221VN3484VnonsynAATGTC420.510715-10717
ORF1ab/nsp5A-B221N221IN3484InonsynaATaTC410.2510715-10717
ORF1ab/nsp5A-B221N221del2N3484del2delAAt--t22110715-10717
ORF1ab/nsp5A-B221N221del1N3484del1delAat-at210.510715-10717
ORF1ab/nsp5A-B221N221del1N3484del1delaaTaa-210.510715-10717

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B221N221SaAtaGt14241425All0.000272
ORF1ab/nsp5A-B221N221SAAtTCt11425All0
ORF1ab/nsp5A-B221N221SaAtaGt13071307B.1.1.70.00117
ORF1ab/nsp5A-B221N221NaaTaaC585585All0.000112
ORF1ab/nsp5A-B221N221HAatCat434434All0.000083
ORF1ab/nsp5A-B221N221HAatCat390390B.1.177.760.972569
ORF1ab/nsp5A-B221N221NaaTaaC240240B.1.1.70.000215
ORF1ab/nsp5A-B221N221NaaTaaC150150D.20.011256
ORF1ab/nsp5A-B221N221delAAT---4747All0.000009
ORF1ab/nsp5A-B221N221SaAtaGt4141AY.440.00025
ORF1ab/nsp5A-B221N221DAatGat2527All0.000005
ORF1ab/nsp5A-B221N221DAaTGaC227All0
ORF1ab/nsp5A-B221N221SaAtaGt2727AY.40.000042
ORF1ab/nsp5A-B221N221NaaTaaC2323AY.40.000036
ORF1ab/nsp5A-B221N221TaAtaCt1818All0.000003
ORF1ab/nsp5A-B221N221YAatTat1517All0.000003
ORF1ab/nsp5A-B221N221KaaTaaG1317All0.000002
ORF1ab/nsp5A-B221N221KaaTaaA417All0.000001
ORF1ab/nsp5A-B221N221YAaTTaC217All0
ORF1ab/nsp5A-B221N221delAAT---1515B.1.1.70.000013
ORF1ab/nsp5A-B221N221HAatCat1313B.1.3610.016753
ORF1ab/nsp5A-B221N221NaaTaaC1212AY.30.000119
ORF1ab/nsp5A-B221N221NaaTaaC1212B.1.20.000106
ORF1ab/nsp5A-B221N221NaaTaaC1212B.1.617.20.000045
ORF1ab/nsp5A-B221N221NaaTaaC1111B.1.6210.000974
ORF1ab/nsp5A-B221N221NaaTaaC99AY.250.000054
ORF1ab/nsp5A-B221N221NaaTaaC99B.1.1770.000119
ORF1ab/nsp5A-B221N221NaaTaaC88B.1.10.000145
ORF1ab/nsp5A-B221N221SaAtaGt88B.1.617.20.00003
ORF1ab/nsp5A-B221N221HAatCat77B.1.4290.000165
ORF1ab/nsp5A-B221N221NaaTaaC66AY.1030.000037
ORF1ab/nsp5A-B221N221DAatGat66AY.30.00006
ORF1ab/nsp5A-B221N221delAAT---66AY.40.000009
ORF1ab/nsp5A-B221N221TaAtaCt66B.1.1.700.002046
ORF1ab/nsp5A-B221N221NaaTaaC66B.1.177.860.001101
ORF1ab/nsp5A-B221N221NaaTaaC66P.1.150.001394
ORF1ab/nsp5A-B221N221NaaTaaC55AY.430.000022
ORF1ab/nsp5A-B221N221NaaTaaC55AY.440.00003
ORF1ab/nsp5A-B221N221NaaTaaC55B.10.000046
ORF1ab/nsp5A-B221N221NaaTaaC55B.1.1.2140.000277
ORF1ab/nsp5A-B221N221HAatCat55B.1.617.20.000019
ORF1ab/nsp5A-B221N221DAatGat240.111111
ORF1ab/nsp5A-B221N221FAAtTTt240.111111
ORF1ab/nsp5A-B221N221FAATTTC240.111111
ORF1ab/nsp5A-B221N221YAaTTaC240.111111
ORF1ab/nsp5A-B221N221DAaTGaC240.111111
ORF1ab/nsp5A-B221N221VAAtGTt240.111111
ORF1ab/nsp5A-B221N221VAATGTC240.111111
ORF1ab/nsp5A-B221N221YAatTat240.111111
ORF1ab/nsp5A-B221N221IaAtaTt34All0.000001
ORF1ab/nsp5A-B221N221FAAtTTt24All0
ORF1ab/nsp5A-B221N221FAATTTC24All0
ORF1ab/nsp5A-B221N221VAAtGTt24All0
ORF1ab/nsp5A-B221N221VAATGTC24All0
ORF1ab/nsp5A-B221N221IaATaTC14All0
ORF1ab/nsp5A-B221N221HAatCat44AY.1020.000106
ORF1ab/nsp5A-B221N221NaaTaaC44AY.4.20.000087
ORF1ab/nsp5A-B221N221KaaTaaG44AY.46.60.000289
ORF1ab/nsp5A-B221N221NaaTaaC44AY.610.000419
ORF1ab/nsp5A-B221N221SaAtaGt44B.1.20.000035
ORF1ab/nsp5A-B221N221SaAtaGt44B.1.2410.003247
ORF1ab/nsp5A-B221N221SaAtaGt44B.1.5960.000349
ORF1ab/nsp5A-B221N221delAAT---33AY.4.50.000322
ORF1ab/nsp5A-B221N221TaAtaCt33AY.98.10.000145
ORF1ab/nsp5A-B221N221NaaTaaC33B.1.1.4340.001046
ORF1ab/nsp5A-B221N221TaAtaCt33B.1.1.70.000003
ORF1ab/nsp5A-B221N221SaAtaGt33B.1.1.710.018182
ORF1ab/nsp5A-B221N221delAAT---33B.1.1770.00004
ORF1ab/nsp5A-B221N221DAatGat33B.1.177.210.000229
ORF1ab/nsp5A-B221N221DAatGat33B.1.20.000026
ORF1ab/nsp5A-B221N221NaaTaaC33B.1.258.170.000312
ORF1ab/nsp5A-B221N221NaaTaaC33P.1.100.000808
ORF1ab/nsp5A-B221N221del2AAt--t22All0
ORF1ab/nsp5A-B221N221del1Aat-at12All0
ORF1ab/nsp5A-B221N221del1aaTaa-12All0
ORF1ab/nsp5A-B221N221NaaTaaC22AY.1000.000092
ORF1ab/nsp5A-B221N221SaAtaGt22AY.1030.000012
ORF1ab/nsp5A-B221N221KaaTaaG22AY.1190.000071
ORF1ab/nsp5A-B221N221NaaTaaC22AY.1210.000271
ORF1ab/nsp5A-B221N221delAAT---22AY.250.000012
ORF1ab/nsp5A-B221N221KaaTaaG22AY.250.000012
ORF1ab/nsp5A-B221N221NaaTaaC22AY.270.000129
ORF1ab/nsp5A-B221N221DAatGat22AY.40.000003
ORF1ab/nsp5A-B221N221SaAtaGt22AY.430.000009
ORF1ab/nsp5A-B221N221HAatCat22AY.440.000012
ORF1ab/nsp5A-B221N221IaAtaTt22B.10.000018
ORF1ab/nsp5A-B221N221KaaTaaG22B.10.000018
ORF1ab/nsp5A-B221N221delAAT---22B.1.10.000036
ORF1ab/nsp5A-B221N221SAAtTCt12B.1.10.000018
ORF1ab/nsp5A-B221N221SaAtaGt12B.1.10.000018
ORF1ab/nsp5A-B221N221SaAtaGt22B.1.1.250.001137
ORF1ab/nsp5A-B221N221YAatTat22B.1.1.3170.000823
ORF1ab/nsp5A-B221N221NaaTaaC22B.1.1.3890.012121
ORF1ab/nsp5A-B221N221NaaTaaC22B.1.1.5190.000079
ORF1ab/nsp5A-B221N221HAatCat22B.1.1770.000026
ORF1ab/nsp5A-B221N221DAatGat22B.1.1770.000026
ORF1ab/nsp5A-B221N221NaaTaaC22B.1.177.320.002699
ORF1ab/nsp5A-B221N221HAatCat22B.1.177.90.002663
ORF1ab/nsp5A-B221N221SaAtaGt22B.1.4290.000047
ORF1ab/nsp5A-B221N221NaaTaaC22B.1.5260.000047
ORF1ab/nsp5A-B221N221delAAT---22B.1.617.20.000008
ORF1ab/nsp5A-B221N221DAatGat22B.1.617.20.000008
ORF1ab/nsp5A-B221N221SaAtaGt22B.1.6370.000146
ORF1ab/nsp5A-B221N221NaaTaaC22P.10.000032
ORF1ab/nsp5A-B221N221NaaTaaC11A0.000387
ORF1ab/nsp5A-B221N221YAatTat11AY.10.000396
ORF1ab/nsp5A-B221N221DAatGat11AY.1000.000046
ORF1ab/nsp5A-B221N221SaAtaGt11AY.1000.000046
ORF1ab/nsp5A-B221N221NaaTaaC11AY.1020.000027
ORF1ab/nsp5A-B221N221HAatCat11AY.1030.000006
ORF1ab/nsp5A-B221N221NaaTaaC11AY.1130.000142
ORF1ab/nsp5A-B221N221NaaTaaC11AY.1170.000085
ORF1ab/nsp5A-B221N221delAAT---11AY.1200.000037
ORF1ab/nsp5A-B221N221DAatGat11AY.1210.000135
ORF1ab/nsp5A-B221N221TaAtaCt11AY.1210.000135
ORF1ab/nsp5A-B221N221HAatCat11AY.200.000039
ORF1ab/nsp5A-B221N221TaAtaCt11AY.200.000039
ORF1ab/nsp5A-B221N221NaaTaaC11AY.200.000039
ORF1ab/nsp5A-B221N221SaAtaGt11AY.200.000039
ORF1ab/nsp5A-B221N221SaAtaGt11AY.250.000006
ORF1ab/nsp5A-B221N221YAatTat11AY.250.000006
ORF1ab/nsp5A-B221N221NaaTaaC11AY.290.000016
ORF1ab/nsp5A-B221N221SaAtaGt11AY.290.000016
ORF1ab/nsp5A-B221N221SaAtaGt11AY.30.00001
ORF1ab/nsp5A-B221N221SaAtaGt11AY.300.000396
ORF1ab/nsp5A-B221N221NaaTaaC11AY.330.000067
ORF1ab/nsp5A-B221N221YAatTat11AY.370.000316
ORF1ab/nsp5A-B221N221NaaTaaC11AY.390.000025
ORF1ab/nsp5A-B221N221YAatTat11AY.40.000002
ORF1ab/nsp5A-B221N221HAatCat11AY.40.000002
ORF1ab/nsp5A-B221N221KaaTaaG11AY.40.000002
ORF1ab/nsp5A-B221N221NaaTaaC11AY.4.2.10.000149
ORF1ab/nsp5A-B221N221YAatTat11AY.4.2.10.000149
ORF1ab/nsp5A-B221N221delAAT---11AY.430.000004
ORF1ab/nsp5A-B221N221YAatTat11AY.430.000004
ORF1ab/nsp5A-B221N221DAatGat11AY.440.000006
ORF1ab/nsp5A-B221N221KaaTaaA11AY.440.000006
ORF1ab/nsp5A-B221N221TaAtaCt11AY.440.000006
ORF1ab/nsp5A-B221N221YAatTat11AY.450.000122
ORF1ab/nsp5A-B221N221NaaTaaC11AY.450.000122
ORF1ab/nsp5A-B221N221DAatGat11AY.50.000021
ORF1ab/nsp5A-B221N221TaAtaCt11AY.50.000021
ORF1ab/nsp5A-B221N221SaAtaGt11AY.60.000041
ORF1ab/nsp5A-B221N221delAAT---11AY.70.000196
ORF1ab/nsp5A-B221N221IaAtaTt11AY.740.000116
ORF1ab/nsp5A-B221N221HAatCat11AY.750.000056
ORF1ab/nsp5A-B221N221NaaTaaC11AY.750.000056
ORF1ab/nsp5A-B221N221NaaTaaC11AY.75.10.00018
ORF1ab/nsp5A-B221N221delAAT---11AY.810.001992
ORF1ab/nsp5A-B221N221delAAT---11AY.90.000068
ORF1ab/nsp5A-B221N221NaaTaaC11AY.9.20.000037
ORF1ab/nsp5A-B221N221NaaTaaC11AY.910.00073
ORF1ab/nsp5A-B221N221NaaTaaC11AY.980.000079
ORF1ab/nsp5A-B221N221NaaTaaC11AY.98.10.000048
ORF1ab/nsp5A-B221N221delAAT---11B.10.000009
ORF1ab/nsp5A-B221N221SaAtaGt11B.10.000009
ORF1ab/nsp5A-B221N221YAatTat11B.1.10.000018
ORF1ab/nsp5A-B221N221del1Aat-at11B.1.10.000018
ORF1ab/nsp5A-B221N221KaaTaaG11B.1.1.1890.001513
ORF1ab/nsp5A-B221N221KaaTaaG11B.1.1.2160.00089
ORF1ab/nsp5A-B221N221SaAtaGt11B.1.1.3110.000358
ORF1ab/nsp5A-B221N221HAatCat11B.1.1.330.000421
ORF1ab/nsp5A-B221N221NaaTaaC11B.1.1.3980.003226
ORF1ab/nsp5A-B221N221NaaTaaC11B.1.1.4090.002833
ORF1ab/nsp5A-B221N221NaaTaaC11B.1.1.4320.001266
ORF1ab/nsp5A-B221N221KaaTaaA11B.1.1.70.000001
ORF1ab/nsp5A-B221N221del1aaTaa-11B.1.1.70.000001
ORF1ab/nsp5A-B221N221NaaTaaC11B.1.1600.000031
ORF1ab/nsp5A-B221N221SaAtaGt11B.1.1600.000031
ORF1ab/nsp5A-B221N221NaaTaaC11B.1.160.280.002924
ORF1ab/nsp5A-B221N221SaAtaGt11B.1.1770.000013
ORF1ab/nsp5A-B221N221HAatCat11B.1.177.100.000878
ORF1ab/nsp5A-B221N221delAAT---11B.1.177.160.000664
ORF1ab/nsp5A-B221N221delAAT---11B.1.177.40.000211
ORF1ab/nsp5A-B221N221HAatCat11B.1.177.420.000894
ORF1ab/nsp5A-B221N221NaaTaaC11B.1.177.50.001242
ORF1ab/nsp5A-B221N221delAAT---11B.1.177.570.000281
ORF1ab/nsp5A-B221N221delAAT---11B.1.177.60.000977
ORF1ab/nsp5A-B221N221NaaTaaC11B.1.177.70.000165
ORF1ab/nsp5A-B221N221YAatTat11B.1.177.760.002494
ORF1ab/nsp5A-B221N221delAAT---11B.1.177.760.002494
ORF1ab/nsp5A-B221N221KaaTaaA11B.1.20.000009
ORF1ab/nsp5A-B221N221YAatTat11B.1.20.000009
ORF1ab/nsp5A-B221N221delAAT---11B.1.2580.000067
ORF1ab/nsp5A-B221N221delAAT---11B.1.258.100.011364
ORF1ab/nsp5A-B221N221SaAtaGt11B.1.258.170.000104
ORF1ab/nsp5A-B221N221HAatCat11B.1.3230.020833
ORF1ab/nsp5A-B221N221SaAtaGt11B.1.360.000146
ORF1ab/nsp5A-B221N221KaaTaaA11B.1.360.000146
ORF1ab/nsp5A-B221N221HAatCat11B.1.36.170.000494
ORF1ab/nsp5A-B221N221SaAtaGt11B.1.3620.001541
ORF1ab/nsp5A-B221N221NaaTaaC11B.1.5170.000427
ORF1ab/nsp5A-B221N221NaaTaaC11B.1.617.10.000129
ORF1ab/nsp5A-B221N221IaATaTC11B.1.617.20.000004
ORF1ab/nsp5A-B221N221TaAtaCt11B.1.617.20.000004
ORF1ab/nsp5A-B221N221NaaTaaC11B.1.6230.000536
ORF1ab/nsp5A-B221N221del2AAt--t11C.360.000911
ORF1ab/nsp5A-B221N221NaaTaaC11C.370.000116
ORF1ab/nsp5A-B221N221DAatGat11D.20.000075
ORF1ab/nsp5A-B221N221delAAT---11N.40.004255
ORF1ab/nsp5A-B221N221YAatTat11P.10.000016
ORF1ab/nsp5A-B221N221SaAtaGt11P.10.000016
ORF1ab/nsp5A-B221N221NaaTaaC11P.1.40.000977
ORF1ab/nsp5A-B221N221del2AAt--t11Q.80.000165
ORF1ab/nsp5A-B221N221TaAtaCt11W.30.005263