CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 221 | N221S | N3484S | nonsyn | aAt | aGt | 1425 | 1424 | 0.999298 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221S | N3484S | nonsyn | AAt | TCt | 1425 | 1 | 0.000701754 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221N | N3484N | syn | aaT | aaC | 585 | 585 | 1 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221H | N3484H | nonsyn | Aat | Cat | 434 | 434 | 1 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221del | N3484del | del | AAT | --- | 47 | 47 | 1 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221D | N3484D | nonsyn | Aat | Gat | 27 | 25 | 0.925926 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221D | N3484D | nonsyn | AaT | GaC | 27 | 2 | 0.0740741 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221T | N3484T | nonsyn | aAt | aCt | 18 | 18 | 1 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221Y | N3484Y | nonsyn | Aat | Tat | 17 | 15 | 0.882353 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221K | N3484K | nonsyn | aaT | aaG | 17 | 13 | 0.764706 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221K | N3484K | nonsyn | aaT | aaA | 17 | 4 | 0.235294 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221Y | N3484Y | nonsyn | AaT | TaC | 17 | 2 | 0.117647 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221I | N3484I | nonsyn | aAt | aTt | 4 | 3 | 0.75 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221F | N3484F | nonsyn | AAt | TTt | 4 | 2 | 0.5 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221F | N3484F | nonsyn | AAT | TTC | 4 | 2 | 0.5 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221V | N3484V | nonsyn | AAt | GTt | 4 | 2 | 0.5 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221V | N3484V | nonsyn | AAT | GTC | 4 | 2 | 0.5 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221I | N3484I | nonsyn | aAT | aTC | 4 | 1 | 0.25 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221del2 | N3484del2 | del | AAt | --t | 2 | 2 | 1 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221del1 | N3484del1 | del | Aat | -at | 2 | 1 | 0.5 | 10715-10717 |
ORF1ab/nsp5A-B | 221 | N221del1 | N3484del1 | del | aaT | aa- | 2 | 1 | 0.5 | 10715-10717 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1424 | 1425 | All | 0.000272 |
ORF1ab/nsp5A-B | 221 | N221S | AAt | TCt | 1 | 1425 | All | 0 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1307 | 1307 | B.1.1.7 | 0.00117 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 585 | 585 | All | 0.000112 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 434 | 434 | All | 0.000083 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 390 | 390 | B.1.177.76 | 0.972569 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 240 | 240 | B.1.1.7 | 0.000215 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 150 | 150 | D.2 | 0.011256 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 47 | 47 | All | 0.000009 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 41 | 41 | AY.44 | 0.00025 |
ORF1ab/nsp5A-B | 221 | N221D | Aat | Gat | 25 | 27 | All | 0.000005 |
ORF1ab/nsp5A-B | 221 | N221D | AaT | GaC | 2 | 27 | All | 0 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 27 | 27 | AY.4 | 0.000042 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 23 | 23 | AY.4 | 0.000036 |
ORF1ab/nsp5A-B | 221 | N221T | aAt | aCt | 18 | 18 | All | 0.000003 |
ORF1ab/nsp5A-B | 221 | N221Y | Aat | Tat | 15 | 17 | All | 0.000003 |
ORF1ab/nsp5A-B | 221 | N221K | aaT | aaG | 13 | 17 | All | 0.000002 |
ORF1ab/nsp5A-B | 221 | N221K | aaT | aaA | 4 | 17 | All | 0.000001 |
ORF1ab/nsp5A-B | 221 | N221Y | AaT | TaC | 2 | 17 | All | 0 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 13 | 13 | B.1.361 | 0.016753 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp5A-B | 221 | N221D | Aat | Gat | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp5A-B | 221 | N221T | aAt | aCt | 6 | 6 | B.1.1.70 | 0.002046 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 6 | 6 | B.1.177.86 | 0.001101 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp5A-B | 221 | N221D | Aat | Gat | 2 | 4 | 0.111111 | |
ORF1ab/nsp5A-B | 221 | N221F | AAt | TTt | 2 | 4 | 0.111111 | |
ORF1ab/nsp5A-B | 221 | N221F | AAT | TTC | 2 | 4 | 0.111111 | |
ORF1ab/nsp5A-B | 221 | N221Y | AaT | TaC | 2 | 4 | 0.111111 | |
ORF1ab/nsp5A-B | 221 | N221D | AaT | GaC | 2 | 4 | 0.111111 | |
ORF1ab/nsp5A-B | 221 | N221V | AAt | GTt | 2 | 4 | 0.111111 | |
ORF1ab/nsp5A-B | 221 | N221V | AAT | GTC | 2 | 4 | 0.111111 | |
ORF1ab/nsp5A-B | 221 | N221Y | Aat | Tat | 2 | 4 | 0.111111 | |
ORF1ab/nsp5A-B | 221 | N221I | aAt | aTt | 3 | 4 | All | 0.000001 |
ORF1ab/nsp5A-B | 221 | N221F | AAt | TTt | 2 | 4 | All | 0 |
ORF1ab/nsp5A-B | 221 | N221F | AAT | TTC | 2 | 4 | All | 0 |
ORF1ab/nsp5A-B | 221 | N221V | AAt | GTt | 2 | 4 | All | 0 |
ORF1ab/nsp5A-B | 221 | N221V | AAT | GTC | 2 | 4 | All | 0 |
ORF1ab/nsp5A-B | 221 | N221I | aAT | aTC | 1 | 4 | All | 0 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp5A-B | 221 | N221K | aaT | aaG | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 4 | 4 | B.1.241 | 0.003247 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp5A-B | 221 | N221T | aAt | aCt | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp5A-B | 221 | N221T | aAt | aCt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 3 | 3 | B.1.1.71 | 0.018182 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp5A-B | 221 | N221D | Aat | Gat | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp5A-B | 221 | N221D | Aat | Gat | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 3 | 3 | P.1.10 | 0.000808 |
ORF1ab/nsp5A-B | 221 | N221del2 | AAt | --t | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 221 | N221del1 | Aat | -at | 1 | 2 | All | 0 |
ORF1ab/nsp5A-B | 221 | N221del1 | aaT | aa- | 1 | 2 | All | 0 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp5A-B | 221 | N221K | aaT | aaG | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 221 | N221K | aaT | aaG | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp5A-B | 221 | N221D | Aat | Gat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp5A-B | 221 | N221I | aAt | aTt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 221 | N221K | aaT | aaG | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp5A-B | 221 | N221S | AAt | TCt | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp5A-B | 221 | N221Y | Aat | Tat | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 2 | 2 | B.1.1.389 | 0.012121 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 221 | N221D | Aat | Gat | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 2 | 2 | B.1.177.32 | 0.002699 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 2 | 2 | B.1.177.9 | 0.002663 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp5A-B | 221 | N221D | Aat | Gat | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 221 | N221Y | Aat | Tat | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp5A-B | 221 | N221D | Aat | Gat | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 221 | N221D | Aat | Gat | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 221 | N221T | aAt | aCt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 221 | N221T | aAt | aCt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 221 | N221Y | Aat | Tat | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp5A-B | 221 | N221Y | Aat | Tat | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 221 | N221Y | Aat | Tat | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 221 | N221K | aaT | aaG | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 221 | N221Y | Aat | Tat | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 221 | N221Y | Aat | Tat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 221 | N221D | Aat | Gat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 221 | N221K | aaT | aaA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 221 | N221T | aAt | aCt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 221 | N221Y | Aat | Tat | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 221 | N221D | Aat | Gat | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 221 | N221T | aAt | aCt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 221 | N221I | aAt | aTt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 221 | N221Y | Aat | Tat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 221 | N221del1 | Aat | -at | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 221 | N221K | aaT | aaG | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp5A-B | 221 | N221K | aaT | aaG | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp5A-B | 221 | N221K | aaT | aaA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 221 | N221del1 | aaT | aa- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp5A-B | 221 | N221Y | Aat | Tat | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp5A-B | 221 | N221K | aaT | aaA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 221 | N221Y | Aat | Tat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 1 | 1 | B.1.323 | 0.020833 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp5A-B | 221 | N221K | aaT | aaA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp5A-B | 221 | N221H | Aat | Cat | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp5A-B | 221 | N221I | aAT | aTC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 221 | N221T | aAt | aCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp5A-B | 221 | N221del2 | AAt | --t | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp5A-B | 221 | N221D | Aat | Gat | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 221 | N221del | AAT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 221 | N221Y | Aat | Tat | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 221 | N221S | aAt | aGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 221 | N221N | aaT | aaC | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp5A-B | 221 | N221del2 | AAt | --t | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp5A-B | 221 | N221T | aAt | aCt | 1 | 1 | W.3 | 0.005263 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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