CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 217

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp5A-B	217	R217S	R3480S	nonsyn	agG	agT	734	722	0.983651	10703-10705
ORF1ab/nsp5A-B	217	R217S	R3480S	nonsyn	agG	agC	734	12	0.0163488	10703-10705
ORF1ab/nsp5A-B	217	R217R	R3480R	syn	agG	agA	294	250	0.85034	10703-10705
ORF1ab/nsp5A-B	217	R217R	R3480R	syn	Agg	Cgg	294	44	0.14966	10703-10705
ORF1ab/nsp5A-B	217	R217M	R3480M	nonsyn	aGg	aTg	121	121	1	10703-10705
ORF1ab/nsp5A-B	217	R217G	R3480G	nonsyn	Agg	Ggg	68	68	1	10703-10705
ORF1ab/nsp5A-B	217	R217K	R3480K	nonsyn	aGg	aAg	59	58	0.983051	10703-10705
ORF1ab/nsp5A-B	217	R217K	R3480K	nonsyn	aGG	aAA	59	1	0.0169492	10703-10705
ORF1ab/nsp5A-B	217	R217del	R3480del	del	AGG	---	58	58	1	10703-10705
ORF1ab/nsp5A-B	217	R217W	R3480W	nonsyn	Agg	Tgg	3	3	1	10703-10705
ORF1ab/nsp5A-B	217	R217T	R3480T	nonsyn	aGg	aCg	3	3	1	10703-10705
ORF1ab/nsp5A-B	217	R217V	R3480V	nonsyn	AGg	GTg	3	3	1	10703-10705
ORF1ab/nsp5A-B	217	R217del1	R3480del1	del	aGg	a-g	2	2	1	10703-10705
ORF1ab/nsp5A-B	217	R217F	R3480F	nonsyn	AGG	TTT	1	1	1	10703-10705
ORF1ab/nsp5A-B	217	R217N	R3480N	nonsyn	aGG	aAT	1	1	1	10703-10705
ORF1ab/nsp5A-B	217	R217del2	R3480del2	del	AGg	--g	1	1	1	10703-10705
ORF1ab/nsp5A-B	217	R217D	R3480D	nonsyn	AGG	GAT	1	1	1	10703-10705

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp5A-B	217	R217S	agG	agT	722	734	All	0.000138
ORF1ab/nsp5A-B	217	R217S	agG	agC	12	734	All	0.000002
ORF1ab/nsp5A-B	217	R217R	agG	agA	250	294	All	0.000048
ORF1ab/nsp5A-B	217	R217R	Agg	Cgg	44	294	All	0.000008
ORF1ab/nsp5A-B	217	R217S	agG	agT	207	207	B.1.88.1	0.995192
ORF1ab/nsp5A-B	217	R217S	agG	agT	146	147	AY.103	0.000907
ORF1ab/nsp5A-B	217	R217S	agG	agC	1	147	AY.103	0.000006
ORF1ab/nsp5A-B	217	R217S	agG	agT	127	130	B.1.1.7	0.000114
ORF1ab/nsp5A-B	217	R217S	agG	agC	3	130	B.1.1.7	0.000003
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	121	121	All	0.000023
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	68	68	All	0.000013
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	58	59	All	0.000011
ORF1ab/nsp5A-B	217	R217K	aGG	aAA	1	59	All	0
ORF1ab/nsp5A-B	217	R217del	AGG	---	58	58	All	0.000011
ORF1ab/nsp5A-B	217	R217R	agG	agA	53	55	B.1.1.7	0.000047
ORF1ab/nsp5A-B	217	R217R	Agg	Cgg	2	55	B.1.1.7	0.000002
ORF1ab/nsp5A-B	217	R217S	agG	agT	54	54	B.1.1.519	0.002144
ORF1ab/nsp5A-B	217	R217R	agG	agA	45	45	AY.103	0.000279
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	36	36	B.1.1.7	0.000032
ORF1ab/nsp5A-B	217	R217S	agG	agT	33	33	B.1.617.2	0.000124
ORF1ab/nsp5A-B	217	R217S	agG	agT	27	28	AY.4	0.000042
ORF1ab/nsp5A-B	217	R217S	agG	agC	1	28	AY.4	0.000002
ORF1ab/nsp5A-B	217	R217R	agG	agA	23	27	AY.4	0.000036
ORF1ab/nsp5A-B	217	R217R	Agg	Cgg	4	27	AY.4	0.000006
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	26	26	B.1.1.7	0.000023
ORF1ab/nsp5A-B	217	R217R	Agg	Cgg	23	23	AY.43	0.000102
ORF1ab/nsp5A-B	217	R217S	agG	agT	22	22	AY.25	0.000132
ORF1ab/nsp5A-B	217	R217del	AGG	---	18	18	B.1.1.7	0.000016
ORF1ab/nsp5A-B	217	R217R	agG	agA	18	18	B.1.400	0.007722
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	16	16	AY.4	0.000025
ORF1ab/nsp5A-B	217	R217R	agG	agA	13	15	AY.25	0.000078
ORF1ab/nsp5A-B	217	R217R	Agg	Cgg	2	15	AY.25	0.000012
ORF1ab/nsp5A-B	217	R217S	agG	agT	14	15	B.1.1	0.000254
ORF1ab/nsp5A-B	217	R217S	agG	agC	1	15	B.1.1	0.000018
ORF1ab/nsp5A-B	217	R217R	Agg	Cgg	9	15	B.1.617.2	0.000034
ORF1ab/nsp5A-B	217	R217R	agG	agA	6	15	B.1.617.2	0.000023
ORF1ab/nsp5A-B	217	R217R	agG	agA	13	13	B.1.177	0.000171
ORF1ab/nsp5A-B	217	R217R	agG	agA	9	9	AY.3	0.00009
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	9	9	B.1.1.7	0.000008
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	9	9	B.1.258	0.000599
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	8	8	B.1.177.57	0.002248
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	7	7	AY.26	0.000198
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	7	7	D.2	0.000525
ORF1ab/nsp5A-B	217	R217R	agG	agA	7	7	P.1.14	0.000335
ORF1ab/nsp5A-B	217	R217S	agG	agT	6	6	AY.102	0.000159
ORF1ab/nsp5A-B	217	R217del	AGG	---	6	6	AY.4	0.000009
ORF1ab/nsp5A-B	217	R217R	agG	agA	6	6	B.1	0.000055
ORF1ab/nsp5A-B	217	R217R	agG	agA	6	6	B.1.429	0.000141
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	5	5	AY.25	0.00003
ORF1ab/nsp5A-B	217	R217S	agG	agT	5	5	AY.3	0.00005
ORF1ab/nsp5A-B	217	R217S	agG	agT	5	5	AY.44	0.00003
ORF1ab/nsp5A-B	217	R217R	agG	agA	4	5	AY.44	0.000024
ORF1ab/nsp5A-B	217	R217R	Agg	Cgg	1	5	AY.44	0.000006
ORF1ab/nsp5A-B	217	R217S	agG	agT	5	5	B.1	0.000046
ORF1ab/nsp5A-B	217	R217S	agG	agT	5	5	B.1.1.433	0.007123
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	5	5	B.1.2	0.000044
ORF1ab/nsp5A-B	217	R217R	agG	agA	5	5	B.1.2	0.000044
ORF1ab/nsp5A-B	217	R217S	agG	agC	5	5	B.1.525	0.000566
ORF1ab/nsp5A-B	217	R217del	AGG	---	5	5	B.1.617.2	0.000019
ORF1ab/nsp5A-B	217	R217S	agG	agT	4	4	AY.120	0.000149
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	4	4	AY.120	0.000149
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	4	4	AY.4	0.000006
ORF1ab/nsp5A-B	217	R217S	agG	agT	4	4	AY.43	0.000018
ORF1ab/nsp5A-B	217	R217del	AGG	---	4	4	AY.43	0.000018
ORF1ab/nsp5A-B	217	R217R	agG	agA	4	4	B.1.258	0.000266
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	4	4	B.1.351	0.000119
ORF1ab/nsp5A-B	217	R217V	AGg	GTg	3	3	All	0.000001
ORF1ab/nsp5A-B	217	R217T	aGg	aCg	3	3	All	0.000001
ORF1ab/nsp5A-B	217	R217W	Agg	Tgg	3	3	All	0.000001
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	3	3	AY.103	0.000019
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	3	3	AY.29	0.000047
ORF1ab/nsp5A-B	217	R217del	AGG	---	3	3	AY.4.5	0.000322
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	3	3	B.1	0.000027
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	3	3	B.1.1	0.000054
ORF1ab/nsp5A-B	217	R217R	agG	agA	3	3	B.1.1.207	0.003546
ORF1ab/nsp5A-B	217	R217R	agG	agA	3	3	B.1.160.14	0.006356
ORF1ab/nsp5A-B	217	R217del	AGG	---	3	3	B.1.177	0.00004
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	3	3	B.1.2	0.000026
ORF1ab/nsp5A-B	217	R217S	agG	agT	3	3	B.1.2	0.000026
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	3	3	B.1.429	0.000071
ORF1ab/nsp5A-B	217	R217S	agG	agT	3	3	B.1.429	0.000071
ORF1ab/nsp5A-B	217	R217R	agG	agA	3	3	B.1.621	0.000266
ORF1ab/nsp5A-B	217	R217S	agG	agT	3	3	P.1	0.000047
ORF1ab/nsp5A-B	217	R217V	AGg	GTg	2	2		0.111111
ORF1ab/nsp5A-B	217	R217R	agG	agA	2	2		0.111111
ORF1ab/nsp5A-B	217	R217del1	aGg	a-g	2	2	All	0
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	2	2	AY.102	0.000053
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	2	2	AY.116.1	0.000623
ORF1ab/nsp5A-B	217	R217R	agG	agA	2	2	AY.20	0.000078
ORF1ab/nsp5A-B	217	R217del	AGG	---	2	2	AY.25	0.000012
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	2	2	AY.43	0.000009
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	2	2	AY.44	0.000012
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	2	2	AY.46.5	0.000397
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	2	2	AY.48	0.00093
ORF1ab/nsp5A-B	217	R217S	agG	agT	2	2	AY.5	0.000041
ORF1ab/nsp5A-B	217	R217S	agG	agT	2	2	AY.51	0.001818
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	2	2	B.1	0.000018
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	2	2	B.1.1	0.000036
ORF1ab/nsp5A-B	217	R217S	agG	agT	2	2	B.1.1.317	0.000823
ORF1ab/nsp5A-B	217	R217S	agG	agT	2	2	B.1.1.326	0.003521
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	2	2	B.1.1.519	0.000079
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	2	2	B.1.110.3	0.001437
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	2	2	B.1.160	0.000062
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	2	B.1.177	0.000013
ORF1ab/nsp5A-B	217	R217S	agG	agC	1	2	B.1.177	0.000013
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	2	2	B.1.177.20	0.003035
ORF1ab/nsp5A-B	217	R217R	agG	agA	2	2	B.1.177.21	0.000153
ORF1ab/nsp5A-B	217	R217R	agG	agA	2	2	B.1.351	0.000059
ORF1ab/nsp5A-B	217	R217R	agG	agA	2	2	B.1.462	0.014493
ORF1ab/nsp5A-B	217	R217K	aGG	aAA	1	2	B.1.617.1	0.000129
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	2	B.1.617.1	0.000129
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	2	2	B.1.617.2	0.000008
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	2	2	B.1.617.2	0.000008
ORF1ab/nsp5A-B	217	R217S	agG	agT	2	2	D.2	0.00015
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	2	2	D.2	0.00015
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	2	2	P.1	0.000032
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	A	0.000387
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	1	A.2	0.000662
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	A.2.2	0.001689
ORF1ab/nsp5A-B	217	R217F	AGG	TTT	1	1	All	0
ORF1ab/nsp5A-B	217	R217N	aGG	aAT	1	1	All	0
ORF1ab/nsp5A-B	217	R217D	AGG	GAT	1	1	All	0
ORF1ab/nsp5A-B	217	R217del2	AGg	--g	1	1	All	0
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	AU.1	0.001266
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	AY.100	0.000046
ORF1ab/nsp5A-B	217	R217R	Agg	Cgg	1	1	AY.101	0.00049
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	1	AY.102	0.000027
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	AY.103	0.000006
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	AY.103	0.000006
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	AY.105	0.000643
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	AY.118	0.000063
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	AY.120	0.000037
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	AY.120	0.000037
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	AY.14	0.000088
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	AY.16	0.00038
ORF1ab/nsp5A-B	217	R217W	Agg	Tgg	1	1	AY.20	0.000039
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	AY.20	0.000039
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	AY.25	0.000006
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	1	AY.25	0.000006
ORF1ab/nsp5A-B	217	R217R	Agg	Cgg	1	1	AY.26	0.000028
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	AY.29	0.000016
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	1	AY.29	0.000016
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	AY.32	0.000532
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	AY.39	0.000025
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	AY.39	0.000025
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	AY.39	0.000025
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	AY.39	0.000025
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	AY.39.1	0.00004
ORF1ab/nsp5A-B	217	R217T	aGg	aCg	1	1	AY.4	0.000002
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	AY.4	0.000002
ORF1ab/nsp5A-B	217	R217D	AGG	GAT	1	1	AY.4.2	0.000022
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	AY.4.2	0.000022
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	AY.4.2.1	0.000149
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	AY.42	0.00004
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	AY.45	0.000122
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	AY.46.6	0.000072
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	AY.47	0.000031
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	1	AY.51	0.000909
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	AY.59	0.00053
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	AY.6	0.000041
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	AY.61	0.000105
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	AY.69	0.000187
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	AY.7	0.000196
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	AY.72	0.001361
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	AY.75	0.000056
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	AY.81	0.001992
ORF1ab/nsp5A-B	217	R217R	Agg	Cgg	1	1	AY.85	0.000427
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	AY.9	0.000068
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	AY.9.1	0.000084
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	AY.9.2	0.000037
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	AY.9.2	0.000037
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	AY.95	0.000761
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	AY.98.1	0.000048
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	B	0.000128
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B	0.000128
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	B.1	0.000009
ORF1ab/nsp5A-B	217	R217del1	aGg	a-g	1	1	B.1	0.000009
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	B.1.1.161	0.003534
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.1.164	0.005155
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.1.196	0.005714
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.1.214	0.000055
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	B.1.1.222	0.000204
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	B.1.1.263	0.001558
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	B.1.1.269	0.001353
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	B.1.1.28	0.000311
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.1.33	0.000421
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	B.1.1.416	0.000905
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.1.434	0.000349
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	B.1.1.519	0.00004
ORF1ab/nsp5A-B	217	R217W	Agg	Tgg	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	217	R217T	aGg	aCg	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.1.70	0.000341
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.160	0.000031
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	B.1.160	0.000031
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	1	B.1.160	0.000031
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	1	B.1.160.28	0.002924
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	B.1.177	0.000013
ORF1ab/nsp5A-B	217	R217del2	AGg	--g	1	1	B.1.177	0.000013
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	B.1.177.21	0.000076
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	B.1.177.35	0.000691
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	B.1.177.4	0.000211
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	B.1.177.57	0.000281
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	B.1.177.6	0.000977
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.177.60	0.000218
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	B.1.177.76	0.002494
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	1	B.1.2	0.000009
ORF1ab/nsp5A-B	217	R217N	aGG	aAT	1	1	B.1.2	0.000009
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	B.1.221	0.000071
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	1	B.1.23	0.006061
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	B.1.23	0.006061
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	B.1.236	0.002053
ORF1ab/nsp5A-B	217	R217W	Agg	Tgg	1	1	B.1.240	0.000216
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	B.1.243	0.00007
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	B.1.243	0.00007
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.243	0.00007
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	1	B.1.243	0.00007
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	B.1.258	0.000067
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	B.1.258.10	0.011364
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.258.17	0.000104
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	1	B.1.324	0.001605
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.324	0.001605
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	B.1.36	0.000146
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.36	0.000146
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.36.8	0.001
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	B.1.377	0.004566
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	B.1.400	0.000429
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	B.1.427	0.00005
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	B.1.427	0.00005
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	B.1.429	0.000024
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.438.1	0.000107
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.456	0.003268
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.517	0.000427
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	B.1.525	0.000113
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	B.1.526	0.000024
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	1	B.1.530	0.007143
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	B.1.538	0.008065
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.558	0.004566
ORF1ab/nsp5A-B	217	R217del1	aGg	a-g	1	1	B.1.564	0.000426
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	B.1.595	0.000261
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	B.1.595	0.000261
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	B.1.596	0.000087
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.596	0.000087
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	217	R217F	AGG	TTT	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	B.1.619	0.000871
ORF1ab/nsp5A-B	217	R217M	aGg	aTg	1	1	B.1.637	0.000073
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	B.34	0.013699
ORF1ab/nsp5A-B	217	R217T	aGg	aCg	1	1	D.2	0.000075
ORF1ab/nsp5A-B	217	R217V	AGg	GTg	1	1	D.2	0.000075
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	N.4	0.004255
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	P.1	0.000016
ORF1ab/nsp5A-B	217	R217K	aGg	aAg	1	1	P.1.12	0.000484
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	P.1.14	0.000048
ORF1ab/nsp5A-B	217	R217G	Agg	Ggg	1	1	P.1.14	0.000048
ORF1ab/nsp5A-B	217	R217R	agG	agA	1	1	P.1.7	0.000319
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	Q.1	0.000126
ORF1ab/nsp5A-B	217	R217S	agG	agT	1	1	Q.2	0.000613
ORF1ab/nsp5A-B	217	R217del	AGG	---	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.