CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 217

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B217R217SR3480SnonsynagGagT7347220.98365110703-10705
ORF1ab/nsp5A-B217R217SR3480SnonsynagGagC734120.016348810703-10705
ORF1ab/nsp5A-B217R217RR3480RsynagGagA2942500.8503410703-10705
ORF1ab/nsp5A-B217R217RR3480RsynAggCgg294440.1496610703-10705
ORF1ab/nsp5A-B217R217MR3480MnonsynaGgaTg121121110703-10705
ORF1ab/nsp5A-B217R217GR3480GnonsynAggGgg6868110703-10705
ORF1ab/nsp5A-B217R217KR3480KnonsynaGgaAg59580.98305110703-10705
ORF1ab/nsp5A-B217R217KR3480KnonsynaGGaAA5910.016949210703-10705
ORF1ab/nsp5A-B217R217delR3480deldelAGG---5858110703-10705
ORF1ab/nsp5A-B217R217WR3480WnonsynAggTgg33110703-10705
ORF1ab/nsp5A-B217R217TR3480TnonsynaGgaCg33110703-10705
ORF1ab/nsp5A-B217R217VR3480VnonsynAGgGTg33110703-10705
ORF1ab/nsp5A-B217R217del1R3480del1delaGga-g22110703-10705
ORF1ab/nsp5A-B217R217FR3480FnonsynAGGTTT11110703-10705
ORF1ab/nsp5A-B217R217NR3480NnonsynaGGaAT11110703-10705
ORF1ab/nsp5A-B217R217del2R3480del2delAGg--g11110703-10705
ORF1ab/nsp5A-B217R217DR3480DnonsynAGGGAT11110703-10705

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B217R217SagGagT722734All0.000138
ORF1ab/nsp5A-B217R217SagGagC12734All0.000002
ORF1ab/nsp5A-B217R217RagGagA250294All0.000048
ORF1ab/nsp5A-B217R217RAggCgg44294All0.000008
ORF1ab/nsp5A-B217R217SagGagT207207B.1.88.10.995192
ORF1ab/nsp5A-B217R217SagGagT146147AY.1030.000907
ORF1ab/nsp5A-B217R217SagGagC1147AY.1030.000006
ORF1ab/nsp5A-B217R217SagGagT127130B.1.1.70.000114
ORF1ab/nsp5A-B217R217SagGagC3130B.1.1.70.000003
ORF1ab/nsp5A-B217R217MaGgaTg121121All0.000023
ORF1ab/nsp5A-B217R217GAggGgg6868All0.000013
ORF1ab/nsp5A-B217R217KaGgaAg5859All0.000011
ORF1ab/nsp5A-B217R217KaGGaAA159All0
ORF1ab/nsp5A-B217R217delAGG---5858All0.000011
ORF1ab/nsp5A-B217R217RagGagA5355B.1.1.70.000047
ORF1ab/nsp5A-B217R217RAggCgg255B.1.1.70.000002
ORF1ab/nsp5A-B217R217SagGagT5454B.1.1.5190.002144
ORF1ab/nsp5A-B217R217RagGagA4545AY.1030.000279
ORF1ab/nsp5A-B217R217MaGgaTg3636B.1.1.70.000032
ORF1ab/nsp5A-B217R217SagGagT3333B.1.617.20.000124
ORF1ab/nsp5A-B217R217SagGagT2728AY.40.000042
ORF1ab/nsp5A-B217R217SagGagC128AY.40.000002
ORF1ab/nsp5A-B217R217RagGagA2327AY.40.000036
ORF1ab/nsp5A-B217R217RAggCgg427AY.40.000006
ORF1ab/nsp5A-B217R217GAggGgg2626B.1.1.70.000023
ORF1ab/nsp5A-B217R217RAggCgg2323AY.430.000102
ORF1ab/nsp5A-B217R217SagGagT2222AY.250.000132
ORF1ab/nsp5A-B217R217delAGG---1818B.1.1.70.000016
ORF1ab/nsp5A-B217R217RagGagA1818B.1.4000.007722
ORF1ab/nsp5A-B217R217KaGgaAg1616AY.40.000025
ORF1ab/nsp5A-B217R217RagGagA1315AY.250.000078
ORF1ab/nsp5A-B217R217RAggCgg215AY.250.000012
ORF1ab/nsp5A-B217R217SagGagT1415B.1.10.000254
ORF1ab/nsp5A-B217R217SagGagC115B.1.10.000018
ORF1ab/nsp5A-B217R217RAggCgg915B.1.617.20.000034
ORF1ab/nsp5A-B217R217RagGagA615B.1.617.20.000023
ORF1ab/nsp5A-B217R217RagGagA1313B.1.1770.000171
ORF1ab/nsp5A-B217R217RagGagA99AY.30.00009
ORF1ab/nsp5A-B217R217KaGgaAg99B.1.1.70.000008
ORF1ab/nsp5A-B217R217MaGgaTg99B.1.2580.000599
ORF1ab/nsp5A-B217R217MaGgaTg88B.1.177.570.002248
ORF1ab/nsp5A-B217R217GAggGgg77AY.260.000198
ORF1ab/nsp5A-B217R217MaGgaTg77D.20.000525
ORF1ab/nsp5A-B217R217RagGagA77P.1.140.000335
ORF1ab/nsp5A-B217R217SagGagT66AY.1020.000159
ORF1ab/nsp5A-B217R217delAGG---66AY.40.000009
ORF1ab/nsp5A-B217R217RagGagA66B.10.000055
ORF1ab/nsp5A-B217R217RagGagA66B.1.4290.000141
ORF1ab/nsp5A-B217R217MaGgaTg55AY.250.00003
ORF1ab/nsp5A-B217R217SagGagT55AY.30.00005
ORF1ab/nsp5A-B217R217SagGagT55AY.440.00003
ORF1ab/nsp5A-B217R217RagGagA45AY.440.000024
ORF1ab/nsp5A-B217R217RAggCgg15AY.440.000006
ORF1ab/nsp5A-B217R217SagGagT55B.10.000046
ORF1ab/nsp5A-B217R217SagGagT55B.1.1.4330.007123
ORF1ab/nsp5A-B217R217GAggGgg55B.1.20.000044
ORF1ab/nsp5A-B217R217RagGagA55B.1.20.000044
ORF1ab/nsp5A-B217R217SagGagC55B.1.5250.000566
ORF1ab/nsp5A-B217R217delAGG---55B.1.617.20.000019
ORF1ab/nsp5A-B217R217SagGagT44AY.1200.000149
ORF1ab/nsp5A-B217R217KaGgaAg44AY.1200.000149
ORF1ab/nsp5A-B217R217GAggGgg44AY.40.000006
ORF1ab/nsp5A-B217R217SagGagT44AY.430.000018
ORF1ab/nsp5A-B217R217delAGG---44AY.430.000018
ORF1ab/nsp5A-B217R217RagGagA44B.1.2580.000266
ORF1ab/nsp5A-B217R217MaGgaTg44B.1.3510.000119
ORF1ab/nsp5A-B217R217VAGgGTg33All0.000001
ORF1ab/nsp5A-B217R217TaGgaCg33All0.000001
ORF1ab/nsp5A-B217R217WAggTgg33All0.000001
ORF1ab/nsp5A-B217R217KaGgaAg33AY.1030.000019
ORF1ab/nsp5A-B217R217MaGgaTg33AY.290.000047
ORF1ab/nsp5A-B217R217delAGG---33AY.4.50.000322
ORF1ab/nsp5A-B217R217MaGgaTg33B.10.000027
ORF1ab/nsp5A-B217R217MaGgaTg33B.1.10.000054
ORF1ab/nsp5A-B217R217RagGagA33B.1.1.2070.003546
ORF1ab/nsp5A-B217R217RagGagA33B.1.160.140.006356
ORF1ab/nsp5A-B217R217delAGG---33B.1.1770.00004
ORF1ab/nsp5A-B217R217MaGgaTg33B.1.20.000026
ORF1ab/nsp5A-B217R217SagGagT33B.1.20.000026
ORF1ab/nsp5A-B217R217MaGgaTg33B.1.4290.000071
ORF1ab/nsp5A-B217R217SagGagT33B.1.4290.000071
ORF1ab/nsp5A-B217R217RagGagA33B.1.6210.000266
ORF1ab/nsp5A-B217R217SagGagT33P.10.000047
ORF1ab/nsp5A-B217R217VAGgGTg220.111111
ORF1ab/nsp5A-B217R217RagGagA220.111111
ORF1ab/nsp5A-B217R217del1aGga-g22All0
ORF1ab/nsp5A-B217R217MaGgaTg22AY.1020.000053
ORF1ab/nsp5A-B217R217MaGgaTg22AY.116.10.000623
ORF1ab/nsp5A-B217R217RagGagA22AY.200.000078
ORF1ab/nsp5A-B217R217delAGG---22AY.250.000012
ORF1ab/nsp5A-B217R217MaGgaTg22AY.430.000009
ORF1ab/nsp5A-B217R217MaGgaTg22AY.440.000012
ORF1ab/nsp5A-B217R217KaGgaAg22AY.46.50.000397
ORF1ab/nsp5A-B217R217KaGgaAg22AY.480.00093
ORF1ab/nsp5A-B217R217SagGagT22AY.50.000041
ORF1ab/nsp5A-B217R217SagGagT22AY.510.001818
ORF1ab/nsp5A-B217R217KaGgaAg22B.10.000018
ORF1ab/nsp5A-B217R217KaGgaAg22B.1.10.000036
ORF1ab/nsp5A-B217R217SagGagT22B.1.1.3170.000823
ORF1ab/nsp5A-B217R217SagGagT22B.1.1.3260.003521
ORF1ab/nsp5A-B217R217GAggGgg22B.1.1.5190.000079
ORF1ab/nsp5A-B217R217MaGgaTg22B.1.110.30.001437
ORF1ab/nsp5A-B217R217GAggGgg22B.1.1600.000062
ORF1ab/nsp5A-B217R217SagGagT12B.1.1770.000013
ORF1ab/nsp5A-B217R217SagGagC12B.1.1770.000013
ORF1ab/nsp5A-B217R217GAggGgg22B.1.177.200.003035
ORF1ab/nsp5A-B217R217RagGagA22B.1.177.210.000153
ORF1ab/nsp5A-B217R217RagGagA22B.1.3510.000059
ORF1ab/nsp5A-B217R217RagGagA22B.1.4620.014493
ORF1ab/nsp5A-B217R217KaGGaAA12B.1.617.10.000129
ORF1ab/nsp5A-B217R217KaGgaAg12B.1.617.10.000129
ORF1ab/nsp5A-B217R217KaGgaAg22B.1.617.20.000008
ORF1ab/nsp5A-B217R217MaGgaTg22B.1.617.20.000008
ORF1ab/nsp5A-B217R217SagGagT22D.20.00015
ORF1ab/nsp5A-B217R217GAggGgg22D.20.00015
ORF1ab/nsp5A-B217R217MaGgaTg22P.10.000032
ORF1ab/nsp5A-B217R217RagGagA11A0.000387
ORF1ab/nsp5A-B217R217KaGgaAg11A.20.000662
ORF1ab/nsp5A-B217R217SagGagT11A.2.20.001689
ORF1ab/nsp5A-B217R217FAGGTTT11All0
ORF1ab/nsp5A-B217R217NaGGaAT11All0
ORF1ab/nsp5A-B217R217DAGGGAT11All0
ORF1ab/nsp5A-B217R217del2AGg--g11All0
ORF1ab/nsp5A-B217R217GAggGgg11AU.10.001266
ORF1ab/nsp5A-B217R217RagGagA11AY.1000.000046
ORF1ab/nsp5A-B217R217RAggCgg11AY.1010.00049
ORF1ab/nsp5A-B217R217KaGgaAg11AY.1020.000027
ORF1ab/nsp5A-B217R217GAggGgg11AY.1030.000006
ORF1ab/nsp5A-B217R217MaGgaTg11AY.1030.000006
ORF1ab/nsp5A-B217R217SagGagT11AY.1050.000643
ORF1ab/nsp5A-B217R217SagGagT11AY.1180.000063
ORF1ab/nsp5A-B217R217MaGgaTg11AY.1200.000037
ORF1ab/nsp5A-B217R217delAGG---11AY.1200.000037
ORF1ab/nsp5A-B217R217MaGgaTg11AY.140.000088
ORF1ab/nsp5A-B217R217SagGagT11AY.160.00038
ORF1ab/nsp5A-B217R217WAggTgg11AY.200.000039
ORF1ab/nsp5A-B217R217MaGgaTg11AY.200.000039
ORF1ab/nsp5A-B217R217GAggGgg11AY.250.000006
ORF1ab/nsp5A-B217R217KaGgaAg11AY.250.000006
ORF1ab/nsp5A-B217R217RAggCgg11AY.260.000028
ORF1ab/nsp5A-B217R217GAggGgg11AY.290.000016
ORF1ab/nsp5A-B217R217KaGgaAg11AY.290.000016
ORF1ab/nsp5A-B217R217MaGgaTg11AY.320.000532
ORF1ab/nsp5A-B217R217GAggGgg11AY.390.000025
ORF1ab/nsp5A-B217R217RagGagA11AY.390.000025
ORF1ab/nsp5A-B217R217SagGagT11AY.390.000025
ORF1ab/nsp5A-B217R217MaGgaTg11AY.390.000025
ORF1ab/nsp5A-B217R217SagGagT11AY.39.10.00004
ORF1ab/nsp5A-B217R217TaGgaCg11AY.40.000002
ORF1ab/nsp5A-B217R217MaGgaTg11AY.40.000002
ORF1ab/nsp5A-B217R217DAGGGAT11AY.4.20.000022
ORF1ab/nsp5A-B217R217SagGagT11AY.4.20.000022
ORF1ab/nsp5A-B217R217GAggGgg11AY.4.2.10.000149
ORF1ab/nsp5A-B217R217RagGagA11AY.420.00004
ORF1ab/nsp5A-B217R217GAggGgg11AY.430.000004
ORF1ab/nsp5A-B217R217KaGgaAg11AY.430.000004
ORF1ab/nsp5A-B217R217KaGgaAg11AY.440.000006
ORF1ab/nsp5A-B217R217SagGagT11AY.450.000122
ORF1ab/nsp5A-B217R217SagGagT11AY.46.60.000072
ORF1ab/nsp5A-B217R217SagGagT11AY.470.000031
ORF1ab/nsp5A-B217R217KaGgaAg11AY.510.000909
ORF1ab/nsp5A-B217R217GAggGgg11AY.590.00053
ORF1ab/nsp5A-B217R217RagGagA11AY.60.000041
ORF1ab/nsp5A-B217R217MaGgaTg11AY.610.000105
ORF1ab/nsp5A-B217R217RagGagA11AY.690.000187
ORF1ab/nsp5A-B217R217SagGagT11AY.70.000196
ORF1ab/nsp5A-B217R217delAGG---11AY.720.001361
ORF1ab/nsp5A-B217R217SagGagT11AY.750.000056
ORF1ab/nsp5A-B217R217delAGG---11AY.810.001992
ORF1ab/nsp5A-B217R217RAggCgg11AY.850.000427
ORF1ab/nsp5A-B217R217delAGG---11AY.90.000068
ORF1ab/nsp5A-B217R217SagGagT11AY.9.10.000084
ORF1ab/nsp5A-B217R217GAggGgg11AY.9.20.000037
ORF1ab/nsp5A-B217R217SagGagT11AY.9.20.000037
ORF1ab/nsp5A-B217R217SagGagT11AY.950.000761
ORF1ab/nsp5A-B217R217MaGgaTg11AY.98.10.000048
ORF1ab/nsp5A-B217R217MaGgaTg11B0.000128
ORF1ab/nsp5A-B217R217SagGagT11B0.000128
ORF1ab/nsp5A-B217R217delAGG---11B.10.000009
ORF1ab/nsp5A-B217R217del1aGga-g11B.10.000009
ORF1ab/nsp5A-B217R217GAggGgg11B.1.10.000018
ORF1ab/nsp5A-B217R217RagGagA11B.1.10.000018
ORF1ab/nsp5A-B217R217delAGG---11B.1.10.000018
ORF1ab/nsp5A-B217R217GAggGgg11B.1.1.1610.003534
ORF1ab/nsp5A-B217R217SagGagT11B.1.1.1640.005155
ORF1ab/nsp5A-B217R217SagGagT11B.1.1.1960.005714
ORF1ab/nsp5A-B217R217SagGagT11B.1.1.2140.000055
ORF1ab/nsp5A-B217R217RagGagA11B.1.1.2220.000204
ORF1ab/nsp5A-B217R217MaGgaTg11B.1.1.2630.001558
ORF1ab/nsp5A-B217R217GAggGgg11B.1.1.2690.001353
ORF1ab/nsp5A-B217R217MaGgaTg11B.1.1.280.000311
ORF1ab/nsp5A-B217R217SagGagT11B.1.1.330.000421
ORF1ab/nsp5A-B217R217RagGagA11B.1.1.4160.000905
ORF1ab/nsp5A-B217R217SagGagT11B.1.1.4340.000349
ORF1ab/nsp5A-B217R217RagGagA11B.1.1.5190.00004
ORF1ab/nsp5A-B217R217WAggTgg11B.1.1.70.000001
ORF1ab/nsp5A-B217R217TaGgaCg11B.1.1.70.000001
ORF1ab/nsp5A-B217R217SagGagT11B.1.1.700.000341
ORF1ab/nsp5A-B217R217SagGagT11B.1.1600.000031
ORF1ab/nsp5A-B217R217MaGgaTg11B.1.1600.000031
ORF1ab/nsp5A-B217R217KaGgaAg11B.1.1600.000031
ORF1ab/nsp5A-B217R217KaGgaAg11B.1.160.280.002924
ORF1ab/nsp5A-B217R217MaGgaTg11B.1.1770.000013
ORF1ab/nsp5A-B217R217del2AGg--g11B.1.1770.000013
ORF1ab/nsp5A-B217R217delAGG---11B.1.177.160.000664
ORF1ab/nsp5A-B217R217delAGG---11B.1.177.210.000076
ORF1ab/nsp5A-B217R217MaGgaTg11B.1.177.350.000691
ORF1ab/nsp5A-B217R217GAggGgg11B.1.177.40.000211
ORF1ab/nsp5A-B217R217delAGG---11B.1.177.40.000211
ORF1ab/nsp5A-B217R217delAGG---11B.1.177.570.000281
ORF1ab/nsp5A-B217R217delAGG---11B.1.177.60.000977
ORF1ab/nsp5A-B217R217SagGagT11B.1.177.600.000218
ORF1ab/nsp5A-B217R217delAGG---11B.1.177.760.002494
ORF1ab/nsp5A-B217R217KaGgaAg11B.1.20.000009
ORF1ab/nsp5A-B217R217NaGGaAT11B.1.20.000009
ORF1ab/nsp5A-B217R217RagGagA11B.1.2210.000071
ORF1ab/nsp5A-B217R217KaGgaAg11B.1.230.006061
ORF1ab/nsp5A-B217R217MaGgaTg11B.1.230.006061
ORF1ab/nsp5A-B217R217MaGgaTg11B.1.2360.002053
ORF1ab/nsp5A-B217R217WAggTgg11B.1.2400.000216
ORF1ab/nsp5A-B217R217MaGgaTg11B.1.2430.00007
ORF1ab/nsp5A-B217R217RagGagA11B.1.2430.00007
ORF1ab/nsp5A-B217R217SagGagT11B.1.2430.00007
ORF1ab/nsp5A-B217R217KaGgaAg11B.1.2430.00007
ORF1ab/nsp5A-B217R217delAGG---11B.1.2580.000067
ORF1ab/nsp5A-B217R217delAGG---11B.1.258.100.011364
ORF1ab/nsp5A-B217R217SagGagT11B.1.258.170.000104
ORF1ab/nsp5A-B217R217KaGgaAg11B.1.3240.001605
ORF1ab/nsp5A-B217R217SagGagT11B.1.3240.001605
ORF1ab/nsp5A-B217R217MaGgaTg11B.1.360.000146
ORF1ab/nsp5A-B217R217SagGagT11B.1.360.000146
ORF1ab/nsp5A-B217R217SagGagT11B.1.36.80.001
ORF1ab/nsp5A-B217R217RagGagA11B.1.3770.004566
ORF1ab/nsp5A-B217R217MaGgaTg11B.1.4000.000429
ORF1ab/nsp5A-B217R217GAggGgg11B.1.4270.00005
ORF1ab/nsp5A-B217R217RagGagA11B.1.4270.00005
ORF1ab/nsp5A-B217R217GAggGgg11B.1.4290.000024
ORF1ab/nsp5A-B217R217SagGagT11B.1.438.10.000107
ORF1ab/nsp5A-B217R217SagGagT11B.1.4560.003268
ORF1ab/nsp5A-B217R217SagGagT11B.1.5170.000427
ORF1ab/nsp5A-B217R217RagGagA11B.1.5250.000113
ORF1ab/nsp5A-B217R217MaGgaTg11B.1.5260.000024
ORF1ab/nsp5A-B217R217KaGgaAg11B.1.5300.007143
ORF1ab/nsp5A-B217R217MaGgaTg11B.1.5380.008065
ORF1ab/nsp5A-B217R217SagGagT11B.1.5580.004566
ORF1ab/nsp5A-B217R217del1aGga-g11B.1.5640.000426
ORF1ab/nsp5A-B217R217RagGagA11B.1.5950.000261
ORF1ab/nsp5A-B217R217GAggGgg11B.1.5950.000261
ORF1ab/nsp5A-B217R217RagGagA11B.1.5960.000087
ORF1ab/nsp5A-B217R217SagGagT11B.1.5960.000087
ORF1ab/nsp5A-B217R217GAggGgg11B.1.617.20.000004
ORF1ab/nsp5A-B217R217FAGGTTT11B.1.617.20.000004
ORF1ab/nsp5A-B217R217SagGagT11B.1.6190.000871
ORF1ab/nsp5A-B217R217MaGgaTg11B.1.6370.000073
ORF1ab/nsp5A-B217R217delAGG---11B.340.013699
ORF1ab/nsp5A-B217R217TaGgaCg11D.20.000075
ORF1ab/nsp5A-B217R217VAGgGTg11D.20.000075
ORF1ab/nsp5A-B217R217delAGG---11N.40.004255
ORF1ab/nsp5A-B217R217RagGagA11P.10.000016
ORF1ab/nsp5A-B217R217KaGgaAg11P.1.120.000484
ORF1ab/nsp5A-B217R217SagGagT11P.1.140.000048
ORF1ab/nsp5A-B217R217GAggGgg11P.1.140.000048
ORF1ab/nsp5A-B217R217RagGagA11P.1.70.000319
ORF1ab/nsp5A-B217R217SagGagT11Q.10.000126
ORF1ab/nsp5A-B217R217SagGagT11Q.20.000613
ORF1ab/nsp5A-B217R217delAGG---11Q.80.000165