CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 213

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B213I213VI3476VnonsynAtaGta612461230.99983710691-10693
ORF1ab/nsp5A-B213I213VI3476VnonsynAtAGtG612410.00016329210691-10693
ORF1ab/nsp5A-B213I213TI3476TnonsynaTaaCa327327110691-10693
ORF1ab/nsp5A-B213I213MI3476MnonsynatAatG127127110691-10693
ORF1ab/nsp5A-B213I213delI3476deldelATA---3535110691-10693
ORF1ab/nsp5A-B213I213LI3476LnonsynAtaTta29220.75862110691-10693
ORF1ab/nsp5A-B213I213LI3476LnonsynAtaCta2970.24137910691-10693
ORF1ab/nsp5A-B213I213II3476IsynatAatT26220.84615410691-10693
ORF1ab/nsp5A-B213I213II3476IsynatAatC2640.15384610691-10693
ORF1ab/nsp5A-B213I213del1I3476del1delatAat-1370.53846210691-10693
ORF1ab/nsp5A-B213I213del1I3476del1delAta-ta1340.30769210691-10693
ORF1ab/nsp5A-B213I213del1I3476del1delaTaa-a1320.15384610691-10693
ORF1ab/nsp5A-B213I213KI3476KnonsynaTaaAa88110691-10693
ORF1ab/nsp5A-B213I213RI3476RnonsynaTaaGa22110691-10693
ORF1ab/nsp5A-B213I213YI3476YnonsynATATAC11110691-10693

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B213I213VAtaGta61236124All0.001171
ORF1ab/nsp5A-B213I213VAtAGtG16124All0
ORF1ab/nsp5A-B213I213VAtaGta31973197AY.116.10.99564
ORF1ab/nsp5A-B213I213VAtaGta22362236AY.1160.641239
ORF1ab/nsp5A-B213I213TaTaaCa327327All0.000063
ORF1ab/nsp5A-B213I213VAtaGta192192AY.1151
ORF1ab/nsp5A-B213I213TaTaaCa170170B.1.1.70.000152
ORF1ab/nsp5A-B213I213VAtaGta151151B.1.617.20.000569
ORF1ab/nsp5A-B213I213MatAatG127127All0.000024
ORF1ab/nsp5A-B213I213VAtaGta4343B.1.1.70.000038
ORF1ab/nsp5A-B213I213delATA---3535All0.000007
ORF1ab/nsp5A-B213I213LAtaTta2229All0.000004
ORF1ab/nsp5A-B213I213LAtaCta729All0.000001
ORF1ab/nsp5A-B213I213TaTaaCa2929P.10.000457
ORF1ab/nsp5A-B213I213IatAatT2226All0.000004
ORF1ab/nsp5A-B213I213IatAatC426All0.000001
ORF1ab/nsp5A-B213I213VAtaGta2525AY.39.10.00099
ORF1ab/nsp5A-B213I213VAtaGta2323AY.540.002193
ORF1ab/nsp5A-B213I213VAtaGta2222AY.40.000034
ORF1ab/nsp5A-B213I213TaTaaCa2020AY.470.000622
ORF1ab/nsp5A-B213I213VAtaGta1919AY.250.000114
ORF1ab/nsp5A-B213I213VAtaGta1718AY.460.001769
ORF1ab/nsp5A-B213I213VAtAGtG118AY.460.000104
ORF1ab/nsp5A-B213I213TaTaaCa1818B.1.617.20.000068
ORF1ab/nsp5A-B213I213LAtaTta1717AY.1030.000106
ORF1ab/nsp5A-B213I213IatAatT1616B.1.1.3170.006587
ORF1ab/nsp5A-B213I213VAtaGta1515AY.440.000091
ORF1ab/nsp5A-B213I213VAtaGta1515B.10.000137
ORF1ab/nsp5A-B213I213MatAatG1414B.1.1.70.000013
ORF1ab/nsp5A-B213I213del1atAat-713All0.000001
ORF1ab/nsp5A-B213I213del1Ata-ta413All0.000001
ORF1ab/nsp5A-B213I213del1aTaa-a213All0
ORF1ab/nsp5A-B213I213VAtaGta1313AY.430.000058
ORF1ab/nsp5A-B213I213VAtaGta1313AY.920.003735
ORF1ab/nsp5A-B213I213MatAatG1313AY.99.20.001198
ORF1ab/nsp5A-B213I213TaTaaCa1313B.1.6270.026263
ORF1ab/nsp5A-B213I213VAtaGta1212AY.1170.001014
ORF1ab/nsp5A-B213I213VAtaGta1212AY.1200.000446
ORF1ab/nsp5A-B213I213delATA---1212B.1.1.70.000011
ORF1ab/nsp5A-B213I213TaTaaCa1212B.1.5260.000282
ORF1ab/nsp5A-B213I213MatAatG1111AY.40.000017
ORF1ab/nsp5A-B213I213MatAatG1010AY.460.001041
ORF1ab/nsp5A-B213I213TaTaaCa1010B.1.20.000088
ORF1ab/nsp5A-B213I213MatAatG1010B.1.3510.000297
ORF1ab/nsp5A-B213I213VAtaGta99AY.390.000222
ORF1ab/nsp5A-B213I213VAtaGta99AY.4.20.000195
ORF1ab/nsp5A-B213I213KaTaaAa88All0.000002
ORF1ab/nsp5A-B213I213MatAatG88AY.430.000035
ORF1ab/nsp5A-B213I213MatAatG77AY.440.000043
ORF1ab/nsp5A-B213I213VAtaGta77AY.840.003062
ORF1ab/nsp5A-B213I213VAtaGta66AY.1030.000037
ORF1ab/nsp5A-B213I213MatAatG66AY.50.000124
ORF1ab/nsp5A-B213I213VAtaGta66B.1.1600.000187
ORF1ab/nsp5A-B213I213VAtaGta66B.1.1770.000079
ORF1ab/nsp5A-B213I213TaTaaCa55AY.250.00003
ORF1ab/nsp5A-B213I213VAtaGta55AY.30.00005
ORF1ab/nsp5A-B213I213TaTaaCa55AY.40.000008
ORF1ab/nsp5A-B213I213TaTaaCa55B.1.10.000091
ORF1ab/nsp5A-B213I213IatAatC240.111111
ORF1ab/nsp5A-B213I213IatAatT240.111111
ORF1ab/nsp5A-B213I213MatAatG44AY.250.000024
ORF1ab/nsp5A-B213I213delATA---44AY.40.000006
ORF1ab/nsp5A-B213I213VAtaGta44AY.5.30.00135
ORF1ab/nsp5A-B213I213delATA---44B.1.617.20.000015
ORF1ab/nsp5A-B213I213MatAatG44B.1.617.20.000015
ORF1ab/nsp5A-B213I213VAtaGta33AY.1020.00008
ORF1ab/nsp5A-B213I213TaTaaCa33AY.1030.000019
ORF1ab/nsp5A-B213I213LAtaCta33AY.1160.00086
ORF1ab/nsp5A-B213I213VAtaGta33AY.230.000209
ORF1ab/nsp5A-B213I213delATA---33AY.4.50.000322
ORF1ab/nsp5A-B213I213VAtaGta33AY.4.50.000322
ORF1ab/nsp5A-B213I213TaTaaCa33AY.440.000018
ORF1ab/nsp5A-B213I213VAtaGta33AY.5.40.00083
ORF1ab/nsp5A-B213I213VAtaGta33AY.990.003148
ORF1ab/nsp5A-B213I213MatAatG33B0.000383
ORF1ab/nsp5A-B213I213VAtaGta33B.1.20.000026
ORF1ab/nsp5A-B213I213MatAatG33B.1.20.000026
ORF1ab/nsp5A-B213I213VAtaGta33B.1.5640.001278
ORF1ab/nsp5A-B213I213LAtaCta33B.1.617.20.000011
ORF1ab/nsp5A-B213I213RaTaaGa220.111111
ORF1ab/nsp5A-B213I213RaTaaGa22All0
ORF1ab/nsp5A-B213I213MatAatG22AY.1030.000012
ORF1ab/nsp5A-B213I213VAtaGta22AY.1140.000462
ORF1ab/nsp5A-B213I213VAtaGta22AY.1180.000125
ORF1ab/nsp5A-B213I213TaTaaCa22AY.1190.000071
ORF1ab/nsp5A-B213I213MatAatG22AY.1200.000074
ORF1ab/nsp5A-B213I213TaTaaCa22AY.120.10.000642
ORF1ab/nsp5A-B213I213VAtaGta22AY.320.001065
ORF1ab/nsp5A-B213I213VAtaGta22AY.350.000466
ORF1ab/nsp5A-B213I213del1Ata-ta22AY.40.000003
ORF1ab/nsp5A-B213I213delATA---22AY.430.000009
ORF1ab/nsp5A-B213I213VAtaGta22AY.470.000062
ORF1ab/nsp5A-B213I213VAtaGta22AY.50.000041
ORF1ab/nsp5A-B213I213MatAatG22AY.750.000112
ORF1ab/nsp5A-B213I213VAtaGta22AY.9.10.000167
ORF1ab/nsp5A-B213I213MatAatG22AY.9.10.000167
ORF1ab/nsp5A-B213I213VAtaGta22AY.9.20.000073
ORF1ab/nsp5A-B213I213MatAatG22AY.9.20.000073
ORF1ab/nsp5A-B213I213MatAatG22B.10.000018
ORF1ab/nsp5A-B213I213LAtaTta22B.1.1.70.000002
ORF1ab/nsp5A-B213I213IatAatC12B.1.1.70.000001
ORF1ab/nsp5A-B213I213IatAatT12B.1.1.70.000001
ORF1ab/nsp5A-B213I213del1atAat-12B.1.20.000009
ORF1ab/nsp5A-B213I213del1aTaa-a12B.1.20.000009
ORF1ab/nsp5A-B213I213MatAatG22B.1.2210.000142
ORF1ab/nsp5A-B213I213VAtaGta22B.1.2340.000264
ORF1ab/nsp5A-B213I213TaTaaCa22B.1.4210.014925
ORF1ab/nsp5A-B213I213VAtaGta22B.1.4270.000101
ORF1ab/nsp5A-B213I213TaTaaCa22B.1.4290.000047
ORF1ab/nsp5A-B213I213TaTaaCa22B.1.5250.000226
ORF1ab/nsp5A-B213I213TaTaaCa22B.1.617.10.000258
ORF1ab/nsp5A-B213I213TaTaaCa22C.36.10.008299
ORF1ab/nsp5A-B213I213TaTaaCa22P.1.140.000096
ORF1ab/nsp5A-B213I213VAtaGta11A0.000387
ORF1ab/nsp5A-B213I213YATATAC11All0
ORF1ab/nsp5A-B213I213MatAatG11AY.1000.000046
ORF1ab/nsp5A-B213I213VAtaGta11AY.1010.00049
ORF1ab/nsp5A-B213I213del1aTaa-a11AY.1030.000006
ORF1ab/nsp5A-B213I213VAtaGta11AY.1060.000335
ORF1ab/nsp5A-B213I213TaTaaCa11AY.1070.000466
ORF1ab/nsp5A-B213I213MatAatG11AY.1090.00074
ORF1ab/nsp5A-B213I213VAtaGta11AY.1110.000183
ORF1ab/nsp5A-B213I213MatAatG11AY.1130.000142
ORF1ab/nsp5A-B213I213MatAatG11AY.1180.000063
ORF1ab/nsp5A-B213I213TaTaaCa11AY.1200.000037
ORF1ab/nsp5A-B213I213VAtaGta11AY.130.000161
ORF1ab/nsp5A-B213I213VAtaGta11AY.140.000088
ORF1ab/nsp5A-B213I213TaTaaCa11AY.16.10.00047
ORF1ab/nsp5A-B213I213TaTaaCa11AY.240.000431
ORF1ab/nsp5A-B213I213MatAatG11AY.260.000028
ORF1ab/nsp5A-B213I213VAtaGta11AY.260.000028
ORF1ab/nsp5A-B213I213TaTaaCa11AY.260.000028
ORF1ab/nsp5A-B213I213MatAatG11AY.30.00001
ORF1ab/nsp5A-B213I213MatAatG11AY.390.000025
ORF1ab/nsp5A-B213I213KaTaaAa11AY.40.000002
ORF1ab/nsp5A-B213I213IatAatC11AY.40.000002
ORF1ab/nsp5A-B213I213YATATAC11AY.4.20.000022
ORF1ab/nsp5A-B213I213VAtaGta11AY.4.30.000842
ORF1ab/nsp5A-B213I213KaTaaAa11AY.400.000964
ORF1ab/nsp5A-B213I213LAtaCta11AY.430.000004
ORF1ab/nsp5A-B213I213KaTaaAa11AY.450.000122
ORF1ab/nsp5A-B213I213VAtaGta11AY.450.000122
ORF1ab/nsp5A-B213I213MatAatG11AY.46.40.000165
ORF1ab/nsp5A-B213I213MatAatG11AY.46.60.000072
ORF1ab/nsp5A-B213I213MatAatG11AY.470.000031
ORF1ab/nsp5A-B213I213VAtaGta11AY.530.000288
ORF1ab/nsp5A-B213I213TaTaaCa11AY.60.000041
ORF1ab/nsp5A-B213I213MatAatG11AY.610.000105
ORF1ab/nsp5A-B213I213VAtaGta11AY.620.000436
ORF1ab/nsp5A-B213I213TaTaaCa11AY.750.000056
ORF1ab/nsp5A-B213I213del1atAat-11AY.750.000056
ORF1ab/nsp5A-B213I213VAtaGta11AY.75.10.00018
ORF1ab/nsp5A-B213I213del1atAat-11AY.810.001992
ORF1ab/nsp5A-B213I213VAtaGta11AY.890.004902
ORF1ab/nsp5A-B213I213delATA---11AY.90.000068
ORF1ab/nsp5A-B213I213TaTaaCa11AY.9.20.000037
ORF1ab/nsp5A-B213I213VAtaGta11AY.960.002075
ORF1ab/nsp5A-B213I213MatAatG11AY.970.001701
ORF1ab/nsp5A-B213I213VAtaGta11AY.980.000079
ORF1ab/nsp5A-B213I213VAtaGta11AY.98.10.000048
ORF1ab/nsp5A-B213I213TaTaaCa11AZ.10.000867
ORF1ab/nsp5A-B213I213TaTaaCa11AZ.20.000821
ORF1ab/nsp5A-B213I213VAtaGta11B0.000128
ORF1ab/nsp5A-B213I213delATA---11B.10.000009
ORF1ab/nsp5A-B213I213LAtaTta11B.10.000009
ORF1ab/nsp5A-B213I213del1atAat-11B.10.000009
ORF1ab/nsp5A-B213I213TaTaaCa11B.10.000009
ORF1ab/nsp5A-B213I213delATA---11B.1.10.000018
ORF1ab/nsp5A-B213I213IatAatT11B.1.10.000018
ORF1ab/nsp5A-B213I213MatAatG11B.1.1.10.000327
ORF1ab/nsp5A-B213I213LAtaTta11B.1.1.1640.005155
ORF1ab/nsp5A-B213I213KaTaaAa11B.1.1.2400.004695
ORF1ab/nsp5A-B213I213VAtaGta11B.1.1.2790.001121
ORF1ab/nsp5A-B213I213MatAatG11B.1.1.3020.002075
ORF1ab/nsp5A-B213I213TaTaaCa11B.1.1.3720.000689
ORF1ab/nsp5A-B213I213KaTaaAa11B.1.1.4090.002833
ORF1ab/nsp5A-B213I213KaTaaAa11B.1.1.70.000001
ORF1ab/nsp5A-B213I213del1Ata-ta11B.1.1.70.000001
ORF1ab/nsp5A-B213I213MatAatG11B.1.1600.000031
ORF1ab/nsp5A-B213I213delATA---11B.1.1770.000013
ORF1ab/nsp5A-B213I213KaTaaAa11B.1.1770.000013
ORF1ab/nsp5A-B213I213delATA---11B.1.177.160.000664
ORF1ab/nsp5A-B213I213del1Ata-ta11B.1.177.40.000211
ORF1ab/nsp5A-B213I213MatAatG11B.1.177.430.001477
ORF1ab/nsp5A-B213I213TaTaaCa11B.1.177.540.000606
ORF1ab/nsp5A-B213I213delATA---11B.1.177.60.000977
ORF1ab/nsp5A-B213I213VAtaGta11B.1.177.70.000165
ORF1ab/nsp5A-B213I213MatAatG11B.1.177.730.000566
ORF1ab/nsp5A-B213I213delATA---11B.1.177.760.002494
ORF1ab/nsp5A-B213I213TaTaaCa11B.1.177.860.000183
ORF1ab/nsp5A-B213I213IatAatT11B.1.177.860.000183
ORF1ab/nsp5A-B213I213KaTaaAa11B.1.2180.005155
ORF1ab/nsp5A-B213I213del1atAat-11B.1.2210.000071
ORF1ab/nsp5A-B213I213MatAatG11B.1.2370.004975
ORF1ab/nsp5A-B213I213delATA---11B.1.2580.000067
ORF1ab/nsp5A-B213I213del1atAat-11B.1.3110.000275
ORF1ab/nsp5A-B213I213VAtaGta11B.1.3510.00003
ORF1ab/nsp5A-B213I213IatAatT11B.1.36.100.004785
ORF1ab/nsp5A-B213I213VAtaGta11B.1.36.70.004
ORF1ab/nsp5A-B213I213VAtaGta11B.1.3960.000706
ORF1ab/nsp5A-B213I213MatAatG11B.1.3960.000706
ORF1ab/nsp5A-B213I213MatAatG11B.1.440.008333
ORF1ab/nsp5A-B213I213TaTaaCa11B.1.6200.000946
ORF1ab/nsp5A-B213I213LAtaTta11B.1.930.000934
ORF1ab/nsp5A-B213I213VAtaGta11C.350.000774
ORF1ab/nsp5A-B213I213TaTaaCa11C.350.000774
ORF1ab/nsp5A-B213I213TaTaaCa11C.370.000116
ORF1ab/nsp5A-B213I213del1atAat-11D.20.000075
ORF1ab/nsp5A-B213I213delATA---11N.40.004255
ORF1ab/nsp5A-B213I213VAtaGta11P.10.000016
ORF1ab/nsp5A-B213I213TaTaaCa11P.1.120.000484
ORF1ab/nsp5A-B213I213VAtaGta11P.1.170.000162
ORF1ab/nsp5A-B213I213delATA---11Q.80.000165