CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 213 | I213V | I3476V | nonsyn | Ata | Gta | 6124 | 6123 | 0.999837 | 10691-10693 |
ORF1ab/nsp5A-B | 213 | I213V | I3476V | nonsyn | AtA | GtG | 6124 | 1 | 0.000163292 | 10691-10693 |
ORF1ab/nsp5A-B | 213 | I213T | I3476T | nonsyn | aTa | aCa | 327 | 327 | 1 | 10691-10693 |
ORF1ab/nsp5A-B | 213 | I213M | I3476M | nonsyn | atA | atG | 127 | 127 | 1 | 10691-10693 |
ORF1ab/nsp5A-B | 213 | I213del | I3476del | del | ATA | --- | 35 | 35 | 1 | 10691-10693 |
ORF1ab/nsp5A-B | 213 | I213L | I3476L | nonsyn | Ata | Tta | 29 | 22 | 0.758621 | 10691-10693 |
ORF1ab/nsp5A-B | 213 | I213L | I3476L | nonsyn | Ata | Cta | 29 | 7 | 0.241379 | 10691-10693 |
ORF1ab/nsp5A-B | 213 | I213I | I3476I | syn | atA | atT | 26 | 22 | 0.846154 | 10691-10693 |
ORF1ab/nsp5A-B | 213 | I213I | I3476I | syn | atA | atC | 26 | 4 | 0.153846 | 10691-10693 |
ORF1ab/nsp5A-B | 213 | I213del1 | I3476del1 | del | atA | at- | 13 | 7 | 0.538462 | 10691-10693 |
ORF1ab/nsp5A-B | 213 | I213del1 | I3476del1 | del | Ata | -ta | 13 | 4 | 0.307692 | 10691-10693 |
ORF1ab/nsp5A-B | 213 | I213del1 | I3476del1 | del | aTa | a-a | 13 | 2 | 0.153846 | 10691-10693 |
ORF1ab/nsp5A-B | 213 | I213K | I3476K | nonsyn | aTa | aAa | 8 | 8 | 1 | 10691-10693 |
ORF1ab/nsp5A-B | 213 | I213R | I3476R | nonsyn | aTa | aGa | 2 | 2 | 1 | 10691-10693 |
ORF1ab/nsp5A-B | 213 | I213Y | I3476Y | nonsyn | ATA | TAC | 1 | 1 | 1 | 10691-10693 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 6123 | 6124 | All | 0.001171 |
ORF1ab/nsp5A-B | 213 | I213V | AtA | GtG | 1 | 6124 | All | 0 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 3197 | 3197 | AY.116.1 | 0.99564 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 2236 | 2236 | AY.116 | 0.641239 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 327 | 327 | All | 0.000063 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 192 | 192 | AY.115 | 1 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 170 | 170 | B.1.1.7 | 0.000152 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 151 | 151 | B.1.617.2 | 0.000569 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 127 | 127 | All | 0.000024 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 43 | 43 | B.1.1.7 | 0.000038 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 35 | 35 | All | 0.000007 |
ORF1ab/nsp5A-B | 213 | I213L | Ata | Tta | 22 | 29 | All | 0.000004 |
ORF1ab/nsp5A-B | 213 | I213L | Ata | Cta | 7 | 29 | All | 0.000001 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 29 | 29 | P.1 | 0.000457 |
ORF1ab/nsp5A-B | 213 | I213I | atA | atT | 22 | 26 | All | 0.000004 |
ORF1ab/nsp5A-B | 213 | I213I | atA | atC | 4 | 26 | All | 0.000001 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 25 | 25 | AY.39.1 | 0.00099 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 23 | 23 | AY.54 | 0.002193 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 22 | 22 | AY.4 | 0.000034 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 20 | 20 | AY.47 | 0.000622 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 19 | 19 | AY.25 | 0.000114 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 17 | 18 | AY.46 | 0.001769 |
ORF1ab/nsp5A-B | 213 | I213V | AtA | GtG | 1 | 18 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 18 | 18 | B.1.617.2 | 0.000068 |
ORF1ab/nsp5A-B | 213 | I213L | Ata | Tta | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp5A-B | 213 | I213I | atA | atT | 16 | 16 | B.1.1.317 | 0.006587 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 15 | 15 | AY.44 | 0.000091 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 15 | 15 | B.1 | 0.000137 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp5A-B | 213 | I213del1 | atA | at- | 7 | 13 | All | 0.000001 |
ORF1ab/nsp5A-B | 213 | I213del1 | Ata | -ta | 4 | 13 | All | 0.000001 |
ORF1ab/nsp5A-B | 213 | I213del1 | aTa | a-a | 2 | 13 | All | 0 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 13 | 13 | AY.92 | 0.003735 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 13 | 13 | AY.99.2 | 0.001198 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 13 | 13 | B.1.627 | 0.026263 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 12 | 12 | AY.117 | 0.001014 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 12 | 12 | AY.120 | 0.000446 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 12 | 12 | B.1.526 | 0.000282 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 10 | 10 | AY.46 | 0.001041 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 10 | 10 | B.1.351 | 0.000297 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 9 | 9 | AY.4.2 | 0.000195 |
ORF1ab/nsp5A-B | 213 | I213K | aTa | aAa | 8 | 8 | All | 0.000002 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 7 | 7 | AY.84 | 0.003062 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp5A-B | 213 | I213I | atA | atC | 2 | 4 | 0.111111 | |
ORF1ab/nsp5A-B | 213 | I213I | atA | atT | 2 | 4 | 0.111111 | |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 4 | 4 | AY.5.3 | 0.00135 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp5A-B | 213 | I213L | Ata | Cta | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 3 | 3 | AY.99 | 0.003148 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 3 | 3 | B | 0.000383 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp5A-B | 213 | I213L | Ata | Cta | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp5A-B | 213 | I213R | aTa | aGa | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 213 | I213R | aTa | aGa | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp5A-B | 213 | I213del1 | Ata | -ta | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 213 | I213L | Ata | Tta | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 213 | I213I | atA | atC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 213 | I213I | atA | atT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 213 | I213del1 | atA | at- | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 213 | I213del1 | aTa | a-a | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 2 | 2 | B.1.421 | 0.014925 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 2 | 2 | C.36.1 | 0.008299 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 213 | I213Y | ATA | TAC | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp5A-B | 213 | I213del1 | aTa | a-a | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 213 | I213K | aTa | aAa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 213 | I213I | atA | atC | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 213 | I213Y | ATA | TAC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp5A-B | 213 | I213K | aTa | aAa | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp5A-B | 213 | I213L | Ata | Cta | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 213 | I213K | aTa | aAa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 213 | I213del1 | atA | at- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp5A-B | 213 | I213del1 | atA | at- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 213 | I213L | Ata | Tta | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 213 | I213del1 | atA | at- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 213 | I213I | atA | atT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp5A-B | 213 | I213L | Ata | Tta | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp5A-B | 213 | I213K | aTa | aAa | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp5A-B | 213 | I213K | aTa | aAa | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp5A-B | 213 | I213K | aTa | aAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 213 | I213del1 | Ata | -ta | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 213 | I213K | aTa | aAa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp5A-B | 213 | I213del1 | Ata | -ta | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp5A-B | 213 | I213I | atA | atT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp5A-B | 213 | I213K | aTa | aAa | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp5A-B | 213 | I213del1 | atA | at- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 213 | I213del1 | atA | at- | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 213 | I213I | atA | atT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp5A-B | 213 | I213M | atA | atG | 1 | 1 | B.1.44 | 0.008333 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp5A-B | 213 | I213L | Ata | Tta | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp5A-B | 213 | I213del1 | atA | at- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 213 | I213T | aTa | aCa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp5A-B | 213 | I213V | Ata | Gta | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp5A-B | 213 | I213del | ATA | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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