CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 196

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B196T196TT3459TsynacGacT13418123930.9236110640-10642
ORF1ab/nsp5A-B196T196TT3459TsynacGacA1341810030.074750310640-10642
ORF1ab/nsp5A-B196T196TT3459TsynacGacC13418220.0016395910640-10642
ORF1ab/nsp5A-B196T196MT3459MnonsynaCgaTg68256825110640-10642
ORF1ab/nsp5A-B196T196AT3459AnonsynAcgGcg122122110640-10642
ORF1ab/nsp5A-B196T196delT3459deldelACG---4949110640-10642
ORF1ab/nsp5A-B196T196KT3459KnonsynaCgaAg55110640-10642
ORF1ab/nsp5A-B196T196del1T3459del1delacGac-530.610640-10642
ORF1ab/nsp5A-B196T196del1T3459del1delAcg-cg510.210640-10642
ORF1ab/nsp5A-B196T196del1T3459del1delaCga-g510.210640-10642
ORF1ab/nsp5A-B196T196ST3459SnonsynAcgTcg430.7510640-10642
ORF1ab/nsp5A-B196T196ST3459SnonsynAcGTcT410.2510640-10642
ORF1ab/nsp5A-B196T196NT3459NnonsynaCGaAT320.66666710640-10642
ORF1ab/nsp5A-B196T196NT3459NnonsynaCGaAC310.33333310640-10642
ORF1ab/nsp5A-B196T196RT3459RnonsynaCgaGg22110640-10642
ORF1ab/nsp5A-B196T196PT3459PnonsynAcgCcg22110640-10642
ORF1ab/nsp5A-B196T196del2T3459del2delACg--g11110640-10642
ORF1ab/nsp5A-B196T196YT3459YnonsynACGTAT11110640-10642
ORF1ab/nsp5A-B196T196XT3459XnonsynACgTAg11110640-10642
ORF1ab/nsp5A-B196T196IT3459InonsynaCGaTT11110640-10642

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B196T196TacGacT1239313418All0.00237
ORF1ab/nsp5A-B196T196TacGacA100313418All0.000192
ORF1ab/nsp5A-B196T196TacGacC2213418All0.000004
ORF1ab/nsp5A-B196T196TacGacT79928004AY.200.31061
ORF1ab/nsp5A-B196T196TacGacA128004AY.200.000466
ORF1ab/nsp5A-B196T196MaCgaTg68256825All0.001305
ORF1ab/nsp5A-B196T196MaCgaTg34233423B.1.4290.080539
ORF1ab/nsp5A-B196T196MaCgaTg10011001AY.440.006093
ORF1ab/nsp5A-B196T196MaCgaTg868868B.1.2340.114527
ORF1ab/nsp5A-B196T196TacGacT721865B.1.1.70.000645
ORF1ab/nsp5A-B196T196TacGacA133865B.1.1.70.000119
ORF1ab/nsp5A-B196T196TacGacC11865B.1.1.70.00001
ORF1ab/nsp5A-B196T196TacGacT340522B.1.617.20.00128
ORF1ab/nsp5A-B196T196TacGacA180522B.1.617.20.000678
ORF1ab/nsp5A-B196T196TacGacC2522B.1.617.20.000008
ORF1ab/nsp5A-B196T196TacGacT297331AY.40.000462
ORF1ab/nsp5A-B196T196TacGacA33331AY.40.000051
ORF1ab/nsp5A-B196T196TacGacC1331AY.40.000002
ORF1ab/nsp5A-B196T196TacGacT211325AY.1030.00131
ORF1ab/nsp5A-B196T196TacGacA113325AY.1030.000702
ORF1ab/nsp5A-B196T196TacGacC1325AY.1030.000006
ORF1ab/nsp5A-B196T196TacGacT301301AY.420.012109
ORF1ab/nsp5A-B196T196TacGacT286293B.1.20.002518
ORF1ab/nsp5A-B196T196TacGacA7293B.1.20.000062
ORF1ab/nsp5A-B196T196MaCgaTg280280B.1.2580.018633
ORF1ab/nsp5A-B196T196TacGacT171173AY.440.001041
ORF1ab/nsp5A-B196T196TacGacA1173AY.440.000006
ORF1ab/nsp5A-B196T196TacGacC1173AY.440.000006
ORF1ab/nsp5A-B196T196TacGacT157166B.1.10.002848
ORF1ab/nsp5A-B196T196TacGacA9166B.1.10.000163
ORF1ab/nsp5A-B196T196MaCgaTg126126B.1.36.330.954545
ORF1ab/nsp5A-B196T196AAcgGcg122122All0.000023
ORF1ab/nsp5A-B196T196MaCgaTg113113B.10.001035
ORF1ab/nsp5A-B196T196MaCgaTg107107B.1.1.70.000096
ORF1ab/nsp5A-B196T196TacGacT9599P.10.001497
ORF1ab/nsp5A-B196T196TacGacA499P.10.000063
ORF1ab/nsp5A-B196T196TacGacT9198AY.260.002576
ORF1ab/nsp5A-B196T196TacGacA798AY.260.000198
ORF1ab/nsp5A-B196T196TacGacT6898B.10.000623
ORF1ab/nsp5A-B196T196TacGacA2998B.10.000266
ORF1ab/nsp5A-B196T196TacGacC198B.10.000009
ORF1ab/nsp5A-B196T196MaCgaTg9393AY.40.000145
ORF1ab/nsp5A-B196T196TacGacT7892AY.430.000346
ORF1ab/nsp5A-B196T196TacGacA1492AY.430.000062
ORF1ab/nsp5A-B196T196TacGacA5290AY.250.000313
ORF1ab/nsp5A-B196T196TacGacT3890AY.250.000229
ORF1ab/nsp5A-B196T196TacGacT7279B.1.1770.000948
ORF1ab/nsp5A-B196T196TacGacA779B.1.1770.000092
ORF1ab/nsp5A-B196T196MaCgaTg7777B.1.20.000678
ORF1ab/nsp5A-B196T196TacGacT7375AY.1140.016871
ORF1ab/nsp5A-B196T196TacGacA275AY.1140.000462
ORF1ab/nsp5A-B196T196TacGacT6874AY.4.20.001475
ORF1ab/nsp5A-B196T196TacGacA674AY.4.20.00013
ORF1ab/nsp5A-B196T196MaCgaTg7070B.1.177.140.426829
ORF1ab/nsp5A-B196T196MaCgaTg6969B.1.6370.005042
ORF1ab/nsp5A-B196T196MaCgaTg6363AY.430.000279
ORF1ab/nsp5A-B196T196TacGacT5763AY.50.001177
ORF1ab/nsp5A-B196T196TacGacA663AY.50.000124
ORF1ab/nsp5A-B196T196TacGacA4461AY.290.000694
ORF1ab/nsp5A-B196T196TacGacT1761AY.290.000268
ORF1ab/nsp5A-B196T196TacGacA3559AY.1000.00161
ORF1ab/nsp5A-B196T196TacGacT2459AY.1000.001104
ORF1ab/nsp5A-B196T196MaCgaTg5959B.1.4270.002979
ORF1ab/nsp5A-B196T196TacGacT5057AY.1020.001326
ORF1ab/nsp5A-B196T196TacGacA757AY.1020.000186
ORF1ab/nsp5A-B196T196MaCgaTg5353B.1.617.20.0002
ORF1ab/nsp5A-B196T196TacGacA4653P.1.150.010688
ORF1ab/nsp5A-B196T196TacGacT753P.1.150.001626
ORF1ab/nsp5A-B196T196TacGacT4952B.1.4270.002474
ORF1ab/nsp5A-B196T196TacGacA352B.1.4270.000151
ORF1ab/nsp5A-B196T196TacGacT4350B.1.5260.001011
ORF1ab/nsp5A-B196T196TacGacA750B.1.5260.000165
ORF1ab/nsp5A-B196T196delACG---4949All0.000009
ORF1ab/nsp5A-B196T196TacGacT4547AY.1200.001673
ORF1ab/nsp5A-B196T196TacGacC147AY.1200.000037
ORF1ab/nsp5A-B196T196TacGacA147AY.1200.000037
ORF1ab/nsp5A-B196T196TacGacA4445AY.1180.002757
ORF1ab/nsp5A-B196T196TacGacT145AY.1180.000063
ORF1ab/nsp5A-B196T196TacGacT4141B.1.1.2680.61194
ORF1ab/nsp5A-B196T196TacGacT3738AY.60.001522
ORF1ab/nsp5A-B196T196TacGacA138AY.60.000041
ORF1ab/nsp5A-B196T196TacGacT2733AY.30.000269
ORF1ab/nsp5A-B196T196TacGacA633AY.30.00006
ORF1ab/nsp5A-B196T196TacGacT3333B.1.1600.001029
ORF1ab/nsp5A-B196T196TacGacA2933P.1.70.009259
ORF1ab/nsp5A-B196T196TacGacT433P.1.70.001277
ORF1ab/nsp5A-B196T196TacGacA3232B.1.1.540.096677
ORF1ab/nsp5A-B196T196AAcgGcg3131AY.40.000048
ORF1ab/nsp5A-B196T196MaCgaTg2828AY.1210.003789
ORF1ab/nsp5A-B196T196TacGacT2727AY.1130.003845
ORF1ab/nsp5A-B196T196TacGacT2626B.1.1.3180.007846
ORF1ab/nsp5A-B196T196TacGacT2425P.1.140.001147
ORF1ab/nsp5A-B196T196TacGacA125P.1.140.000048
ORF1ab/nsp5A-B196T196TacGacA1424AY.1170.001183
ORF1ab/nsp5A-B196T196TacGacT1024AY.1170.000845
ORF1ab/nsp5A-B196T196TacGacT2424B.1.1.330.010101
ORF1ab/nsp5A-B196T196MaCgaTg2323AY.1000.001058
ORF1ab/nsp5A-B196T196TacGacT2122AY.330.001402
ORF1ab/nsp5A-B196T196TacGacA122AY.330.000067
ORF1ab/nsp5A-B196T196MaCgaTg2222B.1.1.1530.024096
ORF1ab/nsp5A-B196T196TacGacT2121AY.9.20.000771
ORF1ab/nsp5A-B196T196TacGacT1621B.1.3510.000476
ORF1ab/nsp5A-B196T196TacGacA521B.1.3510.000149
ORF1ab/nsp5A-B196T196TacGacT1921B.1.360.002772
ORF1ab/nsp5A-B196T196TacGacA221B.1.360.000292
ORF1ab/nsp5A-B196T196TacGacT1921B.1.4290.000447
ORF1ab/nsp5A-B196T196TacGacA221B.1.4290.000047
ORF1ab/nsp5A-B196T196TacGacT1319B.1.1.5190.000516
ORF1ab/nsp5A-B196T196TacGacA619B.1.1.5190.000238
ORF1ab/nsp5A-B196T196MaCgaTg1919B.1.360.002772
ORF1ab/nsp5A-B196T196MaCgaTg1818B.1.1.4640.02651
ORF1ab/nsp5A-B196T196TacGacT1618B.1.177.730.00906
ORF1ab/nsp5A-B196T196TacGacA218B.1.177.730.001133
ORF1ab/nsp5A-B196T196TacGacT1717AY.270.0011
ORF1ab/nsp5A-B196T196TacGacT1617AY.75.10.002885
ORF1ab/nsp5A-B196T196TacGacA117AY.75.10.00018
ORF1ab/nsp5A-B196T196TacGacT1617B.1.1110.018801
ORF1ab/nsp5A-B196T196TacGacA117B.1.1110.001175
ORF1ab/nsp5A-B196T196MaCgaTg1616AY.3.10.001364
ORF1ab/nsp5A-B196T196AAcgGcg1616AY.440.000097
ORF1ab/nsp5A-B196T196delACG---1616B.1.1.70.000014
ORF1ab/nsp5A-B196T196TacGacT1515AY.1190.00053
ORF1ab/nsp5A-B196T196TacGacT915AY.610.000943
ORF1ab/nsp5A-B196T196TacGacA615AY.610.000629
ORF1ab/nsp5A-B196T196TacGacT1515B.1.1.3690.006693
ORF1ab/nsp5A-B196T196TacGacT1515B.1.3900.159574
ORF1ab/nsp5A-B196T196TacGacT1515B.1.5960.001307
ORF1ab/nsp5A-B196T196MaCgaTg1414AY.250.000084
ORF1ab/nsp5A-B196T196AAcgGcg1414AY.250.000084
ORF1ab/nsp5A-B196T196TacGacT1214AY.460.001249
ORF1ab/nsp5A-B196T196TacGacA214AY.460.000208
ORF1ab/nsp5A-B196T196TacGacT1414AY.980.001106
ORF1ab/nsp5A-B196T196TacGacT1214C.370.001393
ORF1ab/nsp5A-B196T196TacGacA214C.370.000232
ORF1ab/nsp5A-B196T196MaCgaTg1313B.1.10.000236
ORF1ab/nsp5A-B196T196MaCgaTg1313B.1.3970.063107
ORF1ab/nsp5A-B196T196TacGacT1313B.1.617.10.001677
ORF1ab/nsp5A-B196T196MaCgaTg1212AY.1030.000075
ORF1ab/nsp5A-B196T196TacGacT912AY.390.000222
ORF1ab/nsp5A-B196T196TacGacA312AY.390.000074
ORF1ab/nsp5A-B196T196AAcgGcg1212B.1.1.70.000011
ORF1ab/nsp5A-B196T196TacGacT1212B.1.36.80.012
ORF1ab/nsp5A-B196T196MaCgaTg1111AY.30.000109
ORF1ab/nsp5A-B196T196TacGacT1010AY.120.10.00321
ORF1ab/nsp5A-B196T196MaCgaTg1010AY.60.000411
ORF1ab/nsp5A-B196T196MaCgaTg1010B.1.1.2140.000555
ORF1ab/nsp5A-B196T196TacGacT1010B.1.1.2220.00204
ORF1ab/nsp5A-B196T196MaCgaTg1010B.1.1.5260.035461
ORF1ab/nsp5A-B196T196TacGacT1010B.1.36.290.005173
ORF1ab/nsp5A-B196T196TacGacT99AY.1210.001218
ORF1ab/nsp5A-B196T196TacGacT99B.1.1.280.002801
ORF1ab/nsp5A-B196T196MaCgaTg99B.1.3110.002471
ORF1ab/nsp5A-B196T196TacGacT99P.1.10.002859
ORF1ab/nsp5A-B196T196TacGacA88AY.140.000704
ORF1ab/nsp5A-B196T196TacGacT78AY.230.000488
ORF1ab/nsp5A-B196T196TacGacA18AY.230.00007
ORF1ab/nsp5A-B196T196TacGacT78AY.710.003325
ORF1ab/nsp5A-B196T196TacGacA18AY.710.000475
ORF1ab/nsp5A-B196T196MaCgaTg88B.1.2400.001725
ORF1ab/nsp5A-B196T196TacGacA68B.1.2400.001293
ORF1ab/nsp5A-B196T196TacGacT28B.1.2400.000431
ORF1ab/nsp5A-B196T196TacGacT88B.1.466.20.00313
ORF1ab/nsp5A-B196T196TacGacT48B.1.6210.000354
ORF1ab/nsp5A-B196T196TacGacA48B.1.6210.000354
ORF1ab/nsp5A-B196T196TacGacT77AY.1050.004502
ORF1ab/nsp5A-B196T196TacGacT77AY.450.000852
ORF1ab/nsp5A-B196T196TacGacA57AY.98.10.000242
ORF1ab/nsp5A-B196T196TacGacT27AY.98.10.000097
ORF1ab/nsp5A-B196T196TacGacT77B.1.1.3060.003069
ORF1ab/nsp5A-B196T196TacGacT77B.1.36.180.002941
ORF1ab/nsp5A-B196T196MaCgaTg77B.1.5960.00061
ORF1ab/nsp5A-B196T196TacGacT77P.20.001306
ORF1ab/nsp5A-B196T196TacGacA66AY.1150.03125
ORF1ab/nsp5A-B196T196TacGacA66AY.720.008163
ORF1ab/nsp5A-B196T196TacGacT66AY.730.003992
ORF1ab/nsp5A-B196T196TacGacT66B.1.1.5260.021277
ORF1ab/nsp5A-B196T196MaCgaTg66B.1.1770.000079
ORF1ab/nsp5A-B196T196TacGacT66B.1.36.310.010508
ORF1ab/nsp5A-B196T196AAcgGcg66B.1.4290.000141
ORF1ab/nsp5A-B196T196TacGacT66B.1.499.10.666667
ORF1ab/nsp5A-B196T196TacGacT66B.1.5030.014925
ORF1ab/nsp5A-B196T196TacGacT66B.1.5240.008439
ORF1ab/nsp5A-B196T196KaCgaAg55All0.000001
ORF1ab/nsp5A-B196T196del1acGac-35All0.000001
ORF1ab/nsp5A-B196T196del1Acg-cg15All0
ORF1ab/nsp5A-B196T196del1aCga-g15All0
ORF1ab/nsp5A-B196T196MaCgaTg55AY.1020.000133
ORF1ab/nsp5A-B196T196TacGacA35AY.1040.005952
ORF1ab/nsp5A-B196T196TacGacT25AY.1040.003968
ORF1ab/nsp5A-B196T196MaCgaTg55AY.1180.000313
ORF1ab/nsp5A-B196T196MaCgaTg55AY.270.000324
ORF1ab/nsp5A-B196T196MaCgaTg55AY.290.000079
ORF1ab/nsp5A-B196T196TacGacT55AY.340.000485
ORF1ab/nsp5A-B196T196TacGacT45AY.39.10.000158
ORF1ab/nsp5A-B196T196TacGacA15AY.39.10.00004
ORF1ab/nsp5A-B196T196TacGacT55AY.5.40.001384
ORF1ab/nsp5A-B196T196TacGacT45AY.750.000224
ORF1ab/nsp5A-B196T196TacGacC15AY.750.000056
ORF1ab/nsp5A-B196T196TacGacT35AY.99.20.000276
ORF1ab/nsp5A-B196T196TacGacA25AY.99.20.000184
ORF1ab/nsp5A-B196T196MaCgaTg55B0.000639
ORF1ab/nsp5A-B196T196TacGacT55B.1.1.1320.074627
ORF1ab/nsp5A-B196T196MaCgaTg55B.1.1.3060.002192
ORF1ab/nsp5A-B196T196TacGacT55B.1.1.500.003394
ORF1ab/nsp5A-B196T196MaCgaTg55B.1.1.5190.000199
ORF1ab/nsp5A-B196T196MaCgaTg55B.1.2430.000348
ORF1ab/nsp5A-B196T196TacGacT55B.1.2430.000348
ORF1ab/nsp5A-B196T196TacGacT45B.1.2580.000266
ORF1ab/nsp5A-B196T196TacGacA15B.1.2580.000067
ORF1ab/nsp5A-B196T196TacGacT55B.1.6090.002397
ORF1ab/nsp5A-B196T196TacGacT55D.20.000375
ORF1ab/nsp5A-B196T196TacGacT55R.10.00045
ORF1ab/nsp5A-B196T196delACG---440.222222
ORF1ab/nsp5A-B196T196TacGacA44A0.001548
ORF1ab/nsp5A-B196T196SAcgTcg34All0.000001
ORF1ab/nsp5A-B196T196SAcGTcT14All0
ORF1ab/nsp5A-B196T196TacGacT44AY.10.001583
ORF1ab/nsp5A-B196T196TacGacT44AY.160.001519
ORF1ab/nsp5A-B196T196MaCgaTg44AY.450.000487
ORF1ab/nsp5A-B196T196TacGacA24AY.470.000062
ORF1ab/nsp5A-B196T196TacGacT24AY.470.000062
ORF1ab/nsp5A-B196T196TacGacT44AY.510.003636
ORF1ab/nsp5A-B196T196TacGacT44AY.9.10.000335
ORF1ab/nsp5A-B196T196TacGacT34AY.920.000862
ORF1ab/nsp5A-B196T196TacGacA14AY.920.000287
ORF1ab/nsp5A-B196T196TacGacT44B0.000511
ORF1ab/nsp5A-B196T196AAcgGcg44B.10.000037
ORF1ab/nsp5A-B196T196TacGacT34B.1.1.2160.002671
ORF1ab/nsp5A-B196T196TacGacA14B.1.1.2160.00089
ORF1ab/nsp5A-B196T196TacGacT44B.1.1.3040.011236
ORF1ab/nsp5A-B196T196MaCgaTg44B.1.1.3180.001207
ORF1ab/nsp5A-B196T196TacGacT34B.1.1.4480.006098
ORF1ab/nsp5A-B196T196TacGacA14B.1.1.4480.002033
ORF1ab/nsp5A-B196T196MaCgaTg44B.1.1600.000125
ORF1ab/nsp5A-B196T196TacGacT34B.1.177.210.000229
ORF1ab/nsp5A-B196T196TacGacA14B.1.177.210.000076
ORF1ab/nsp5A-B196T196MaCgaTg44B.1.177.330.006579
ORF1ab/nsp5A-B196T196TacGacT44B.1.4250.011976
ORF1ab/nsp5A-B196T196TacGacT34B.1.5250.000339
ORF1ab/nsp5A-B196T196TacGacA14B.1.5250.000113
ORF1ab/nsp5A-B196T196MaCgaTg44B.1.5260.000094
ORF1ab/nsp5A-B196T196AAcgGcg44B.1.617.20.000015
ORF1ab/nsp5A-B196T196TacGacT44B.1.6370.000292
ORF1ab/nsp5A-B196T196MaCgaTg44R.10.00036
ORF1ab/nsp5A-B196T196TacGacA130.055556
ORF1ab/nsp5A-B196T196TacGacC130.055556
ORF1ab/nsp5A-B196T196TacGacT130.055556
ORF1ab/nsp5A-B196T196AAcgGcg33A.2.50.001497
ORF1ab/nsp5A-B196T196TacGacT33A.280.007937
ORF1ab/nsp5A-B196T196NaCGaAT23All0
ORF1ab/nsp5A-B196T196NaCGaAC13All0
ORF1ab/nsp5A-B196T196AAcgGcg33AY.1100.000338
ORF1ab/nsp5A-B196T196TacGacT33AY.116.10.000934
ORF1ab/nsp5A-B196T196TacGacT33AY.130.000483
ORF1ab/nsp5A-B196T196TacGacT23AY.240.000862
ORF1ab/nsp5A-B196T196TacGacA13AY.240.000431
ORF1ab/nsp5A-B196T196TacGacT33AY.360.000445
ORF1ab/nsp5A-B196T196AAcgGcg33AY.390.000074
ORF1ab/nsp5A-B196T196MaCgaTg33AY.4.20.000065
ORF1ab/nsp5A-B196T196AAcgGcg33AY.430.000013
ORF1ab/nsp5A-B196T196MaCgaTg33AY.46.40.000494
ORF1ab/nsp5A-B196T196MaCgaTg33AY.46.60.000217
ORF1ab/nsp5A-B196T196MaCgaTg33AY.50.000062
ORF1ab/nsp5A-B196T196TacGacT33AY.540.000286
ORF1ab/nsp5A-B196T196TacGacT33AY.590.001589
ORF1ab/nsp5A-B196T196TacGacT33AY.810.005976
ORF1ab/nsp5A-B196T196TacGacT33AY.820.004071
ORF1ab/nsp5A-B196T196TacGacT33AY.840.001312
ORF1ab/nsp5A-B196T196TacGacT33AY.90.000203
ORF1ab/nsp5A-B196T196TacGacT33B.1.1.1700.003741
ORF1ab/nsp5A-B196T196TacGacT33B.1.1.2840.000322
ORF1ab/nsp5A-B196T196TacGacA33B.1.177.750.003122
ORF1ab/nsp5A-B196T196AAcgGcg33B.1.20.000026
ORF1ab/nsp5A-B196T196TacGacT33B.1.214.20.001799
ORF1ab/nsp5A-B196T196TacGacT33B.1.258.160.00491
ORF1ab/nsp5A-B196T196TacGacA23B.1.351.20.000605
ORF1ab/nsp5A-B196T196TacGacT13B.1.351.20.000303
ORF1ab/nsp5A-B196T196TacGacT33B.1.3690.000856
ORF1ab/nsp5A-B196T196MaCgaTg33B.1.4090.002344
ORF1ab/nsp5A-B196T196TacGacT33B.1.5510.003871
ORF1ab/nsp5A-B196T196TacGacT33C.350.002322
ORF1ab/nsp5A-B196T196MaCgaTg33D.20.000225
ORF1ab/nsp5A-B196T196TacGacT33P.1.170.000485
ORF1ab/nsp5A-B196T196TacGacA23P.1.80.009569
ORF1ab/nsp5A-B196T196TacGacT13P.1.80.004785
ORF1ab/nsp5A-B196T196TacGacT33P.70.0131
ORF1ab/nsp5A-B196T196KaCgaAg220.111111
ORF1ab/nsp5A-B196T196SAcgTcg120.055556
ORF1ab/nsp5A-B196T196NaCGaAT120.055556
ORF1ab/nsp5A-B196T196NaCGaAC120.055556
ORF1ab/nsp5A-B196T196SAcGTcT120.055556
ORF1ab/nsp5A-B196T196TacGacT22A.30.004193
ORF1ab/nsp5A-B196T196TacGacT22AE.80.000978
ORF1ab/nsp5A-B196T196MaCgaTg22AE.80.000978
ORF1ab/nsp5A-B196T196PAcgCcg22All0
ORF1ab/nsp5A-B196T196RaCgaGg22All0
ORF1ab/nsp5A-B196T196TacGacT22AY.16.10.00094
ORF1ab/nsp5A-B196T196TacGacT22AY.220.004184
ORF1ab/nsp5A-B196T196AAcgGcg22AY.30.00002
ORF1ab/nsp5A-B196T196TacGacA22AY.300.000791
ORF1ab/nsp5A-B196T196TacGacT22AY.320.001065
ORF1ab/nsp5A-B196T196MaCgaTg22AY.330.000134
ORF1ab/nsp5A-B196T196TacGacT22AY.380.000999
ORF1ab/nsp5A-B196T196delACG---22AY.40.000003
ORF1ab/nsp5A-B196T196TacGacT22AY.4.2.10.000298
ORF1ab/nsp5A-B196T196TacGacT22AY.4.40.000818
ORF1ab/nsp5A-B196T196TacGacT22AY.4.50.000215
ORF1ab/nsp5A-B196T196delACG---22AY.4.50.000215
ORF1ab/nsp5A-B196T196TacGacT22AY.400.001929
ORF1ab/nsp5A-B196T196delACG---22AY.430.000009
ORF1ab/nsp5A-B196T196TacGacT22AY.46.60.000144
ORF1ab/nsp5A-B196T196TacGacT22AY.600.001876
ORF1ab/nsp5A-B196T196TacGacT22AY.620.000871
ORF1ab/nsp5A-B196T196MaCgaTg22AY.690.000373
ORF1ab/nsp5A-B196T196TacGacT22AY.690.000373
ORF1ab/nsp5A-B196T196MaCgaTg22AY.70.000392
ORF1ab/nsp5A-B196T196TacGacT22AY.7.10.000225
ORF1ab/nsp5A-B196T196TacGacT22AY.740.000231
ORF1ab/nsp5A-B196T196AAcgGcg22AY.75.10.000361
ORF1ab/nsp5A-B196T196TacGacT22AY.880.001768
ORF1ab/nsp5A-B196T196TacGacT22AY.900.001369
ORF1ab/nsp5A-B196T196TacGacT22AY.99.10.003106
ORF1ab/nsp5A-B196T196MaCgaTg22AY.99.20.000184
ORF1ab/nsp5A-B196T196delACG---22B.1.10.000036
ORF1ab/nsp5A-B196T196TacGacT22B.1.1.1330.016949
ORF1ab/nsp5A-B196T196TacGacT22B.1.1.1740.006757
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.1.2200.003717
ORF1ab/nsp5A-B196T196TacGacT22B.1.1.2340.024096
ORF1ab/nsp5A-B196T196delACG---22B.1.1.2360.013793
ORF1ab/nsp5A-B196T196TacGacT22B.1.1.2690.002706
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.1.2940.002532
ORF1ab/nsp5A-B196T196TacGacA22B.1.1.3110.000716
ORF1ab/nsp5A-B196T196TacGacT22B.1.1.3120.003824
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.1.3470.036364
ORF1ab/nsp5A-B196T196AAcgGcg22B.1.1.3620.011236
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.1.4860.003155
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.1.520.02439
ORF1ab/nsp5A-B196T196TacGacT12B.1.1.700.000341
ORF1ab/nsp5A-B196T196TacGacC12B.1.1.700.000341
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.177.160.001329
ORF1ab/nsp5A-B196T196TacGacT22B.1.177.170.001642
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.2210.000142
ORF1ab/nsp5A-B196T196AAcgGcg22B.1.2210.000142
ORF1ab/nsp5A-B196T196TacGacA12B.1.2210.000071
ORF1ab/nsp5A-B196T196TacGacT12B.1.2210.000071
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.3490.00143
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.36.80.002
ORF1ab/nsp5A-B196T196TacGacT22B.1.3890.002004
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.3960.001411
ORF1ab/nsp5A-B196T196TacGacT22B.1.4280.002041
ORF1ab/nsp5A-B196T196delACG---22B.1.5610.000794
ORF1ab/nsp5A-B196T196TacGacT12B.1.5640.000426
ORF1ab/nsp5A-B196T196TacGacA12B.1.5640.000426
ORF1ab/nsp5A-B196T196TacGacT22B.1.5650.001621
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.5820.000981
ORF1ab/nsp5A-B196T196delACG---22B.1.617.20.000008
ORF1ab/nsp5A-B196T196TacGacT22B.1.617.30.00597
ORF1ab/nsp5A-B196T196TacGacA12B.1.6280.000352
ORF1ab/nsp5A-B196T196TacGacT12B.1.6280.000352
ORF1ab/nsp5A-B196T196TacGacT22P.1.120.000968
ORF1ab/nsp5A-B196T196TacGacT22Q.10.000253
ORF1ab/nsp5A-B196T196TacGacT22Q.80.00033
ORF1ab/nsp5A-B196T196YACGTAT110.055556
ORF1ab/nsp5A-B196T196XACgTAg110.055556
ORF1ab/nsp5A-B196T196MaCgaTg11A.10.000282
ORF1ab/nsp5A-B196T196TacGacA11A.20.000662
ORF1ab/nsp5A-B196T196MaCgaTg11A.20.000662
ORF1ab/nsp5A-B196T196TacGacT11A.2.50.000499
ORF1ab/nsp5A-B196T196MaCgaTg11A.50.001923
ORF1ab/nsp5A-B196T196MaCgaTg11AE.20.058824
ORF1ab/nsp5A-B196T196TacGacT11AL.10.012987
ORF1ab/nsp5A-B196T196YACGTAT11All0
ORF1ab/nsp5A-B196T196XACgTAg11All0
ORF1ab/nsp5A-B196T196IaCGaTT11All0
ORF1ab/nsp5A-B196T196del2ACg--g11All0
ORF1ab/nsp5A-B196T196TacGacA11AY.1010.00049
ORF1ab/nsp5A-B196T196AAcgGcg11AY.1030.000006
ORF1ab/nsp5A-B196T196MaCgaTg11AY.1050.000643
ORF1ab/nsp5A-B196T196MaCgaTg11AY.1070.000466
ORF1ab/nsp5A-B196T196TacGacT11AY.1070.000466
ORF1ab/nsp5A-B196T196MaCgaTg11AY.1100.000113
ORF1ab/nsp5A-B196T196TacGacT11AY.1110.000183
ORF1ab/nsp5A-B196T196MaCgaTg11AY.1140.000231
ORF1ab/nsp5A-B196T196MaCgaTg11AY.1160.000287
ORF1ab/nsp5A-B196T196TacGacT11AY.1160.000287
ORF1ab/nsp5A-B196T196MaCgaTg11AY.1170.000085
ORF1ab/nsp5A-B196T196MaCgaTg11AY.1190.000035
ORF1ab/nsp5A-B196T196TacGacA11AY.120.000316
ORF1ab/nsp5A-B196T196del1Acg-cg11AY.1200.000037
ORF1ab/nsp5A-B196T196AAcgGcg11AY.1200.000037
ORF1ab/nsp5A-B196T196MaCgaTg11AY.130.000161
ORF1ab/nsp5A-B196T196MaCgaTg11AY.20.000356
ORF1ab/nsp5A-B196T196IaCGaTT11AY.200.000039
ORF1ab/nsp5A-B196T196MaCgaTg11AY.230.00007
ORF1ab/nsp5A-B196T196delACG---11AY.230.00007
ORF1ab/nsp5A-B196T196MaCgaTg11AY.260.000028
ORF1ab/nsp5A-B196T196RaCgaGg11AY.330.000067
ORF1ab/nsp5A-B196T196MaCgaTg11AY.390.000025
ORF1ab/nsp5A-B196T196SAcgTcg11AY.40.000002
ORF1ab/nsp5A-B196T196AAcgGcg11AY.4.20.000022
ORF1ab/nsp5A-B196T196MaCgaTg11AY.4.2.10.000149
ORF1ab/nsp5A-B196T196TacGacA11AY.4.30.000842
ORF1ab/nsp5A-B196T196delACG---11AY.420.00004
ORF1ab/nsp5A-B196T196AAcgGcg11AY.420.00004
ORF1ab/nsp5A-B196T196NaCGaAT11AY.440.000006
ORF1ab/nsp5A-B196T196KaCgaAg11AY.440.000006
ORF1ab/nsp5A-B196T196MaCgaTg11AY.460.000104
ORF1ab/nsp5A-B196T196TacGacT11AY.46.20.000635
ORF1ab/nsp5A-B196T196TacGacT11AY.46.40.000165
ORF1ab/nsp5A-B196T196MaCgaTg11AY.5.30.000337
ORF1ab/nsp5A-B196T196TacGacT11AY.570.000656
ORF1ab/nsp5A-B196T196MaCgaTg11AY.570.000656
ORF1ab/nsp5A-B196T196MaCgaTg11AY.610.000105
ORF1ab/nsp5A-B196T196TacGacT11AY.670.000464
ORF1ab/nsp5A-B196T196TacGacT11AY.680.000274
ORF1ab/nsp5A-B196T196TacGacT11AY.700.000209
ORF1ab/nsp5A-B196T196delACG---11AY.750.000056
ORF1ab/nsp5A-B196T196MaCgaTg11AY.75.10.00018
ORF1ab/nsp5A-B196T196TacGacT11AY.80.000606
ORF1ab/nsp5A-B196T196TacGacT11AY.850.000427
ORF1ab/nsp5A-B196T196MaCgaTg11AY.850.000427
ORF1ab/nsp5A-B196T196TacGacT11AY.860.00083
ORF1ab/nsp5A-B196T196TacGacT11AY.950.000761
ORF1ab/nsp5A-B196T196MaCgaTg11AY.980.000079
ORF1ab/nsp5A-B196T196delACG---11AY.990.001049
ORF1ab/nsp5A-B196T196MaCgaTg11AY.99.10.001553
ORF1ab/nsp5A-B196T196AAcgGcg11B0.000128
ORF1ab/nsp5A-B196T196del1acGac-11B0.000128
ORF1ab/nsp5A-B196T196PAcgCcg11B.10.000009
ORF1ab/nsp5A-B196T196KaCgaAg11B.10.000009
ORF1ab/nsp5A-B196T196delACG---11B.10.000009
ORF1ab/nsp5A-B196T196AAcgGcg11B.1.1.10.000327
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.10.000327
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.100.001115
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.1170.009709
ORF1ab/nsp5A-B196T196TacGacA11B.1.1.120.007463
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.1410.002012
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.1590.004673
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.1760.000439
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.1810.004545
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.1890.001513
ORF1ab/nsp5A-B196T196TacGacA11B.1.1.2140.000055
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.2160.00089
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.2200.001859
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.2370.005405
ORF1ab/nsp5A-B196T196TacGacA11B.1.1.250.000569
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.250.000569
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.2550.00303
ORF1ab/nsp5A-B196T196SAcgTcg11B.1.1.280.000311
ORF1ab/nsp5A-B196T196delACG---11B.1.1.2880.001916
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.2940.001266
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.3010.001179
ORF1ab/nsp5A-B196T196AAcgGcg11B.1.1.3060.000438
ORF1ab/nsp5A-B196T196TacGacA11B.1.1.3070.002532
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.310.066667
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.3170.000412
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.3260.001761
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.3510.002793
ORF1ab/nsp5A-B196T196TacGacC11B.1.1.3540.004386
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.3700.012658
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.4060.006494
ORF1ab/nsp5A-B196T196TacGacA11B.1.1.4160.000905
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.4320.001266
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.4330.001425
ORF1ab/nsp5A-B196T196TacGacA11B.1.1.4340.000349
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.480.002874
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.5070.008696
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.580.005376
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.630.000386
ORF1ab/nsp5A-B196T196del2ACg--g11B.1.1.70.000001
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.700.000341
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.830.00271
ORF1ab/nsp5A-B196T196TacGacT11B.1.1.900.1
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1110.001175
ORF1ab/nsp5A-B196T196TacGacA11B.1.1260.001276
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.130.002375
ORF1ab/nsp5A-B196T196TacGacT11B.1.1400.018868
ORF1ab/nsp5A-B196T196TacGacT11B.1.1430.021277
ORF1ab/nsp5A-B196T196RaCgaGg11B.1.160.260.002421
ORF1ab/nsp5A-B196T196delACG---11B.1.1770.000013
ORF1ab/nsp5A-B196T196TacGacT11B.1.177.120.000152
ORF1ab/nsp5A-B196T196TacGacT11B.1.177.310.011494
ORF1ab/nsp5A-B196T196del1acGac-11B.1.177.40.000211
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.177.40.000211
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.177.440.000519
ORF1ab/nsp5A-B196T196TacGacT11B.1.177.440.000519
ORF1ab/nsp5A-B196T196TacGacT11B.1.177.500.004695
ORF1ab/nsp5A-B196T196TacGacT11B.1.177.560.000668
ORF1ab/nsp5A-B196T196TacGacT11B.1.177.60.000977
ORF1ab/nsp5A-B196T196TacGacT11B.1.177.70.000165
ORF1ab/nsp5A-B196T196PAcgCcg11B.1.177.730.000566
ORF1ab/nsp5A-B196T196AAcgGcg11B.1.177.730.000566
ORF1ab/nsp5A-B196T196delACG---11B.1.177.760.002494
ORF1ab/nsp5A-B196T196TacGacT11B.1.177.770.000726
ORF1ab/nsp5A-B196T196AAcgGcg11B.1.177.810.000189
ORF1ab/nsp5A-B196T196TacGacT11B.1.177.870.000728
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.2060.000816
ORF1ab/nsp5A-B196T196TacGacT11B.1.2100.002132
ORF1ab/nsp5A-B196T196TacGacT11B.1.214.10.02
ORF1ab/nsp5A-B196T196del1acGac-11B.1.2210.000071
ORF1ab/nsp5A-B196T196KaCgaAg11B.1.2210.000071
ORF1ab/nsp5A-B196T196TacGacT11B.1.2340.000132
ORF1ab/nsp5A-B196T196delACG---11B.1.2580.000067
ORF1ab/nsp5A-B196T196TacGacT11B.1.258.170.000104
ORF1ab/nsp5A-B196T196delACG---11B.1.258.30.001675
ORF1ab/nsp5A-B196T196TacGacT11B.1.3050.002151
ORF1ab/nsp5A-B196T196TacGacT11B.1.3110.000275
ORF1ab/nsp5A-B196T196TacGacT11B.1.3130.006579
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.3240.001605
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.3400.004292
ORF1ab/nsp5A-B196T196delACG---11B.1.3510.00003
ORF1ab/nsp5A-B196T196TacGacT11B.1.351.30.000876
ORF1ab/nsp5A-B196T196TacGacT11B.1.351.50.0006
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.3540.043478
ORF1ab/nsp5A-B196T196delACG---11B.1.360.000146
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.36.10.00114
ORF1ab/nsp5A-B196T196TacGacT11B.1.36.170.000494
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.36.170.000494
ORF1ab/nsp5A-B196T196TacGacT11B.1.3660.004878
ORF1ab/nsp5A-B196T196TacGacT11B.1.3670.000792
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.3690.000285
ORF1ab/nsp5A-B196T196TacGacT11B.1.3710.001122
ORF1ab/nsp5A-B196T196TacGacT11B.1.3910.001127
ORF1ab/nsp5A-B196T196TacGacT11B.1.4220.000812
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.4240.008065
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.429.10.012048
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.438.10.000107
ORF1ab/nsp5A-B196T196TacGacT11B.1.4560.003268
ORF1ab/nsp5A-B196T196TacGacA11B.1.4590.004082
ORF1ab/nsp5A-B196T196TacGacT11B.1.4660.023256
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.466.20.000391
ORF1ab/nsp5A-B196T196TacGacT11B.1.4700.001404
ORF1ab/nsp5A-B196T196TacGacA11B.1.5100.026316
ORF1ab/nsp5A-B196T196TacGacT11B.1.5400.009709
ORF1ab/nsp5A-B196T196TacGacT11B.1.5600.00463
ORF1ab/nsp5A-B196T196TacGacT11B.1.5610.000397
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.5680.001111
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.5760.000907
ORF1ab/nsp5A-B196T196TacGacA11B.1.5760.000907
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.5800.004065
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.5950.000261
ORF1ab/nsp5A-B196T196TacGacT11B.1.5970.00463
ORF1ab/nsp5A-B196T196TacGacT11B.1.6010.030303
ORF1ab/nsp5A-B196T196del1aCga-g11B.1.617.30.002985
ORF1ab/nsp5A-B196T196TacGacT11B.1.6200.000946
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.6210.000089
ORF1ab/nsp5A-B196T196TacGacT11B.1.621.10.000506
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.6280.000352
ORF1ab/nsp5A-B196T196TacGacT11B.290.003509
ORF1ab/nsp5A-B196T196TacGacT11B.390.002331
ORF1ab/nsp5A-B196T196MaCgaTg11B.4.50.011905
ORF1ab/nsp5A-B196T196TacGacT11B.460.020833
ORF1ab/nsp5A-B196T196delACG---11C.360.000911
ORF1ab/nsp5A-B196T196MaCgaTg11C.370.000116
ORF1ab/nsp5A-B196T196delACG---11N.40.004255
ORF1ab/nsp5A-B196T196AAcgGcg11N.90.005952
ORF1ab/nsp5A-B196T196MaCgaTg11P.10.000016
ORF1ab/nsp5A-B196T196AAcgGcg11P.10.000016
ORF1ab/nsp5A-B196T196TacGacT11P.1.100.000269
ORF1ab/nsp5A-B196T196TacGacT11P.1.160.000374
ORF1ab/nsp5A-B196T196MaCgaTg11P.1.70.000319
ORF1ab/nsp5A-B196T196MaCgaTg11P.20.000187
ORF1ab/nsp5A-B196T196TacGacT11P.40.003802
ORF1ab/nsp5A-B196T196delACG---11Q.10.000126
ORF1ab/nsp5A-B196T196TacGacT11Q.30.000145
ORF1ab/nsp5A-B196T196AAcgGcg11Q.80.000165