CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 191 | A191V | A3454V | nonsyn | gCa | gTa | 5391 | 5387 | 0.999258 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191V | A3454V | nonsyn | gCA | gTG | 5391 | 4 | 0.000741977 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191A | A3454A | syn | gcA | gcG | 398 | 324 | 0.81407 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191A | A3454A | syn | gcA | gcT | 398 | 69 | 0.173367 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191A | A3454A | syn | gcA | gcC | 398 | 5 | 0.0125628 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191T | A3454T | nonsyn | Gca | Aca | 350 | 349 | 0.997143 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191T | A3454T | nonsyn | GcA | AcG | 350 | 1 | 0.00285714 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191S | A3454S | nonsyn | Gca | Tca | 98 | 97 | 0.989796 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191S | A3454S | nonsyn | GcA | TcG | 98 | 1 | 0.0102041 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191del | A3454del | del | GCA | --- | 70 | 70 | 1 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191G | A3454G | nonsyn | gCa | gGa | 15 | 12 | 0.8 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191G | A3454G | nonsyn | gCA | gGT | 15 | 2 | 0.133333 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191G | A3454G | nonsyn | gCA | gGC | 15 | 1 | 0.0666667 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191P | A3454P | nonsyn | Gca | Cca | 7 | 5 | 0.714286 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191P | A3454P | nonsyn | GcA | CcT | 7 | 1 | 0.142857 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191P | A3454P | nonsyn | GcA | CcC | 7 | 1 | 0.142857 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191del2 | A3454del2 | del | gCA | g-- | 4 | 4 | 1 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191R | A3454R | nonsyn | GCA | CGT | 4 | 1 | 0.25 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191R | A3454R | nonsyn | GCA | CGC | 4 | 1 | 0.25 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191R | A3454R | nonsyn | GCa | CGa | 4 | 1 | 0.25 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191R | A3454R | nonsyn | GCa | AGa | 4 | 1 | 0.25 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191del1 | A3454del1 | del | gcA | gc- | 3 | 2 | 0.666667 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191del1 | A3454del1 | del | Gca | -ca | 3 | 1 | 0.333333 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191E | A3454E | nonsyn | gCa | gAa | 2 | 2 | 1 | 10625-10627 |
ORF1ab/nsp5A-B | 191 | A191L | A3454L | nonsyn | GCA | TTG | 1 | 1 | 1 | 10625-10627 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 5387 | 5391 | All | 0.00103 |
ORF1ab/nsp5A-B | 191 | A191V | gCA | gTG | 4 | 5391 | All | 0.000001 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 659 | 659 | B.1.177.20 | 1 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 518 | 522 | AY.4 | 0.000806 |
ORF1ab/nsp5A-B | 191 | A191V | gCA | gTG | 4 | 522 | AY.4 | 0.000006 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 495 | 495 | B.1.1.7 | 0.000443 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 324 | 398 | All | 0.000062 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcT | 69 | 398 | All | 0.000013 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcC | 5 | 398 | All | 0.000001 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 381 | 381 | B.1.2 | 0.003355 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 349 | 350 | All | 0.000067 |
ORF1ab/nsp5A-B | 191 | A191T | GcA | AcG | 1 | 350 | All | 0 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 232 | 232 | B.1.617.2 | 0.000874 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 197 | 197 | AY.25 | 0.001185 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 183 | 183 | AY.103 | 0.001136 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 169 | 169 | B.1 | 0.001548 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 165 | 165 | B.1.206 | 0.134584 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 162 | 162 | B.1.177 | 0.002133 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 133 | 133 | AY.4 | 0.000207 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 117 | 117 | AY.43 | 0.000518 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 111 | 111 | AY.44 | 0.000676 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 97 | 98 | All | 0.000019 |
ORF1ab/nsp5A-B | 191 | A191S | GcA | TcG | 1 | 98 | All | 0 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 95 | 95 | B.1.1.519 | 0.003773 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 89 | 89 | B.1.177.86 | 0.016327 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 85 | 85 | B.1.1 | 0.001542 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 84 | 85 | B.1.1.7 | 0.000075 |
ORF1ab/nsp5A-B | 191 | A191T | GcA | AcG | 1 | 85 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 85 | 85 | B.1.429 | 0.002 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 81 | 81 | AY.3 | 0.000806 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 72 | 72 | AY.42 | 0.002897 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 70 | 70 | All | 0.000013 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcT | 50 | 68 | B.1.1.7 | 0.000045 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 14 | 68 | B.1.1.7 | 0.000013 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcC | 4 | 68 | B.1.1.7 | 0.000004 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 56 | 56 | AY.4 | 0.000087 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 52 | 52 | AY.4.3 | 0.043771 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 44 | 44 | AY.5 | 0.000909 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 44 | 44 | B.1.36 | 0.00642 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 44 | 44 | B.1.617.2 | 0.000166 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 39 | 39 | B.1.1.93 | 1 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 37 | 37 | B.1.1.328 | 0.627119 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 37 | 37 | B.1.160 | 0.001154 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 37 | 37 | B.1.351 | 0.0011 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 35 | 35 | B.1.177.21 | 0.002676 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 33 | 33 | AY.85 | 0.014097 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 28 | 28 | AY.39 | 0.000692 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 28 | 28 | B.1.526 | 0.000658 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 27 | 27 | B.1.1.7 | 0.000024 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 26 | 26 | B.1.561 | 0.010322 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 25 | 25 | AY.4.2 | 0.000542 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 24 | 24 | AY.102 | 0.000636 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 24 | 24 | B.1.1.41 | 0.151899 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 23 | 23 | AY.20 | 0.000894 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 22 | 22 | AY.6 | 0.000905 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 22 | 22 | B.1.160.9 | 0.158273 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 22 | 22 | B.1.223 | 0.061111 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 22 | 22 | B.1.617.1 | 0.002837 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 21 | 21 | AY.26 | 0.000595 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 20 | 20 | AY.29 | 0.000315 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 19 | 19 | AY.39.1 | 0.000753 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 19 | 19 | AY.47 | 0.000591 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 19 | 19 | AY.98 | 0.001501 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 18 | 18 | AY.9 | 0.001217 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 17 | 17 | AY.100 | 0.000782 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 17 | 17 | B.1.1.28 | 0.005291 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 17 | 17 | B.1.258.17 | 0.001768 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 17 | 17 | B.1.596 | 0.001481 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 17 | 17 | R.1 | 0.00153 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 16 | 16 | D.2 | 0.001201 |
ORF1ab/nsp5A-B | 191 | A191G | gCa | gGa | 12 | 15 | All | 0.000002 |
ORF1ab/nsp5A-B | 191 | A191G | gCA | gGT | 2 | 15 | All | 0 |
ORF1ab/nsp5A-B | 191 | A191G | gCA | gGC | 1 | 15 | All | 0 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 15 | 15 | B.1.177.75 | 0.015609 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 15 | 15 | P.1 | 0.000236 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 14 | 14 | AY.106 | 0.004689 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 14 | 14 | AY.44 | 0.000085 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 14 | 14 | AY.46 | 0.001457 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 14 | 14 | AY.75 | 0.000784 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 14 | 14 | B.1.258 | 0.000932 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 13 | 13 | B.1.1.216 | 0.011576 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 13 | 13 | B.1.234 | 0.001715 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 12 | 12 | B.1.177.7 | 0.001978 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 12 | 12 | B.1.221 | 0.000852 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 12 | 12 | B.1.243 | 0.000835 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 12 | 12 | B.1.258.16 | 0.01964 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcT | 12 | 12 | B.1.36.38 | 0.019704 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 12 | 12 | B.1.429 | 0.000282 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 11 | 11 | AY.7.1 | 0.00124 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 11 | 11 | AY.9.2 | 0.000404 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 11 | 11 | AY.96 | 0.022822 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 11 | 11 | P.2 | 0.002053 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 10 | 10 | AY.67 | 0.004643 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 10 | 10 | B.1.1.434 | 0.003486 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 10 | 10 | B.1.428 | 0.010204 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 10 | 10 | P.1 | 0.000158 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 9 | 9 | B.1.1.214 | 0.000499 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 9 | 9 | B.1.240 | 0.00194 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 9 | 9 | B.1.619.1 | 0.005773 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 8 | 8 | B.1.1.284 | 0.000859 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 8 | 8 | B.1.177.86 | 0.001468 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 8 | 8 | B.1.466.2 | 0.00313 |
ORF1ab/nsp5A-B | 191 | A191P | Gca | Cca | 5 | 7 | All | 0.000001 |
ORF1ab/nsp5A-B | 191 | A191P | GcA | CcT | 1 | 7 | All | 0 |
ORF1ab/nsp5A-B | 191 | A191P | GcA | CcC | 1 | 7 | All | 0 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 7 | 7 | AY.23 | 0.000488 |
ORF1ab/nsp5A-B | 191 | A191G | gCa | gGa | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 7 | 7 | AY.41 | 0.002058 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 7 | 7 | B.1.1.232 | 0.012704 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 7 | 7 | C.36 | 0.006375 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 7 | 7 | N.8 | 0.21875 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 6 | 6 | AY.9.1 | 0.000502 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 6 | 6 | B.1.1.33 | 0.002525 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 6 | 6 | B.1.396 | 0.004234 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 6 | 6 | B.1.609 | 0.002876 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 5 | 6 | B.1.617.2 | 0.000019 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcT | 1 | 6 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 6 | 6 | B.39 | 0.013986 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 5 | 5 | AY.114 | 0.001156 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 5 | 5 | AY.30 | 0.001979 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 5 | 5 | AZ.2 | 0.004105 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 5 | 5 | B.1.232 | 0.002687 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 5 | 5 | B.1.497 | 0.001574 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 5 | 5 | B.1.532 | 0.031056 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 5 | 5 | B.1.588 | 0.00455 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 5 | 5 | B.1.637 | 0.000365 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp5A-B | 191 | A191G | gCa | gGa | 2 | 4 | 0.111111 | |
ORF1ab/nsp5A-B | 191 | A191G | gCA | gGT | 1 | 4 | 0.055556 | |
ORF1ab/nsp5A-B | 191 | A191G | gCA | gGC | 1 | 4 | 0.055556 | |
ORF1ab/nsp5A-B | 191 | A191R | GCA | CGT | 1 | 4 | 0.055556 | |
ORF1ab/nsp5A-B | 191 | A191R | GCa | CGa | 1 | 4 | 0.055556 | |
ORF1ab/nsp5A-B | 191 | A191R | GCA | CGC | 1 | 4 | 0.055556 | |
ORF1ab/nsp5A-B | 191 | A191R | GCa | AGa | 1 | 4 | 0.055556 | |
ORF1ab/nsp5A-B | 191 | A191del2 | gCA | g-- | 4 | 4 | All | 0.000001 |
ORF1ab/nsp5A-B | 191 | A191R | GCA | CGC | 1 | 4 | All | 0 |
ORF1ab/nsp5A-B | 191 | A191R | GCa | AGa | 1 | 4 | All | 0 |
ORF1ab/nsp5A-B | 191 | A191R | GCA | CGT | 1 | 4 | All | 0 |
ORF1ab/nsp5A-B | 191 | A191R | GCa | CGa | 1 | 4 | All | 0 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | AY.37 | 0.001264 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | B | 0.000511 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | B.1.1.189 | 0.006051 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | B.1.1.25 | 0.002274 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | B.1.1.63 | 0.001543 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | B.1.22 | 0.00527 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | B.1.346 | 0.005242 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | B.1.366 | 0.019512 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | B.1.37 | 0.058824 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | B.1.404 | 0.005208 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | B.1.509 | 0.003463 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 4 | 4 | B.1.517 | 0.001708 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp5A-B | 191 | A191P | GcA | CcT | 1 | 3 | 0.055556 | |
ORF1ab/nsp5A-B | 191 | A191P | GcA | CcC | 1 | 3 | 0.055556 | |
ORF1ab/nsp5A-B | 191 | A191P | Gca | Cca | 1 | 3 | 0.055556 | |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 3 | 3 | A.2.5.2 | 0.004717 |
ORF1ab/nsp5A-B | 191 | A191del1 | gcA | gc- | 2 | 3 | All | 0 |
ORF1ab/nsp5A-B | 191 | A191del1 | Gca | -ca | 1 | 3 | All | 0 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 2 | 3 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcT | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 3 | 3 | AY.80 | 0.003386 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcT | 2 | 3 | B.1.2 | 0.000018 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 3 | 3 | B.1.546 | 0.011111 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 3 | 3 | B.1.551 | 0.003871 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 3 | 3 | B.1.81 | 0.06383 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcC | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcT | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AL.1 | 0.025974 |
ORF1ab/nsp5A-B | 191 | A191E | gCa | gAa | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp5A-B | 191 | A191P | Gca | Cca | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 2 | 2 | AY.80 | 0.002257 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.1.391 | 0.017094 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.1.47 | 0.010695 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.1.521 | 0.010695 |
ORF1ab/nsp5A-B | 191 | A191P | Gca | Cca | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 191 | A191G | gCa | gGa | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 191 | A191G | gCA | gGT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.199 | 0.008264 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.355 | 0.022222 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.426 | 0.002018 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.448 | 0.005249 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 2 | 2 | B.1.536 | 0.047619 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | B.1.93 | 0.001867 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | A.2.3 | 0.004739 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp5A-B | 191 | A191L | GCA | TTG | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 191 | A191G | gCa | gGa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 191 | A191del2 | gCA | g-- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.125 | 0.010204 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp5A-B | 191 | A191del2 | gCA | g-- | 1 | 1 | B.1.1.268 | 0.014925 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp5A-B | 191 | A191E | gCa | gAa | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.342 | 0.0625 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.359 | 0.027778 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.363 | 0.005988 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.1.40 | 0.034483 |
ORF1ab/nsp5A-B | 191 | A191del2 | gCA | g-- | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp5A-B | 191 | A191del1 | gcA | gc- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.134 | 0.005464 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.177.3 | 0.007634 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp5A-B | 191 | A191del1 | gcA | gc- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.177.70 | 0.005917 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.180 | 0.05 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.201 | 0.005682 |
ORF1ab/nsp5A-B | 191 | A191G | gCa | gGa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.258.22 | 0.002667 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.270 | 0.005618 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.328 | 0.03125 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.337 | 0.005587 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.385 | 0.010638 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp5A-B | 191 | A191S | GcA | TcG | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp5A-B | 191 | A191E | gCa | gAa | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.547 | 0.02439 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp5A-B | 191 | A191A | gcA | gcG | 1 | 1 | B.1.591 | 0.010638 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | B.1.595.3 | 0.026316 |
ORF1ab/nsp5A-B | 191 | A191del2 | gCA | g-- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.603 | 0.010638 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp5A-B | 191 | A191del1 | Gca | -ca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 191 | A191L | GCA | TTG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | B.1.9.4 | 0.006135 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.4.8 | 0.071429 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp5A-B | 191 | A191T | Gca | Aca | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp5A-B | 191 | A191S | Gca | Tca | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp5A-B | 191 | A191V | gCa | gTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp5A-B | 191 | A191del | GCA | --- | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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