CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 191

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B191A191VA3454VnonsyngCagTa539153870.99925810625-10627
ORF1ab/nsp5A-B191A191VA3454VnonsyngCAgTG539140.00074197710625-10627
ORF1ab/nsp5A-B191A191AA3454AsyngcAgcG3983240.8140710625-10627
ORF1ab/nsp5A-B191A191AA3454AsyngcAgcT398690.17336710625-10627
ORF1ab/nsp5A-B191A191AA3454AsyngcAgcC39850.012562810625-10627
ORF1ab/nsp5A-B191A191TA3454TnonsynGcaAca3503490.99714310625-10627
ORF1ab/nsp5A-B191A191TA3454TnonsynGcAAcG35010.0028571410625-10627
ORF1ab/nsp5A-B191A191SA3454SnonsynGcaTca98970.98979610625-10627
ORF1ab/nsp5A-B191A191SA3454SnonsynGcATcG9810.010204110625-10627
ORF1ab/nsp5A-B191A191delA3454deldelGCA---7070110625-10627
ORF1ab/nsp5A-B191A191GA3454GnonsyngCagGa15120.810625-10627
ORF1ab/nsp5A-B191A191GA3454GnonsyngCAgGT1520.13333310625-10627
ORF1ab/nsp5A-B191A191GA3454GnonsyngCAgGC1510.066666710625-10627
ORF1ab/nsp5A-B191A191PA3454PnonsynGcaCca750.71428610625-10627
ORF1ab/nsp5A-B191A191PA3454PnonsynGcACcT710.14285710625-10627
ORF1ab/nsp5A-B191A191PA3454PnonsynGcACcC710.14285710625-10627
ORF1ab/nsp5A-B191A191del2A3454del2delgCAg--44110625-10627
ORF1ab/nsp5A-B191A191RA3454RnonsynGCACGT410.2510625-10627
ORF1ab/nsp5A-B191A191RA3454RnonsynGCACGC410.2510625-10627
ORF1ab/nsp5A-B191A191RA3454RnonsynGCaCGa410.2510625-10627
ORF1ab/nsp5A-B191A191RA3454RnonsynGCaAGa410.2510625-10627
ORF1ab/nsp5A-B191A191del1A3454del1delgcAgc-320.66666710625-10627
ORF1ab/nsp5A-B191A191del1A3454del1delGca-ca310.33333310625-10627
ORF1ab/nsp5A-B191A191EA3454EnonsyngCagAa22110625-10627
ORF1ab/nsp5A-B191A191LA3454LnonsynGCATTG11110625-10627

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B191A191VgCagTa53875391All0.00103
ORF1ab/nsp5A-B191A191VgCAgTG45391All0.000001
ORF1ab/nsp5A-B191A191VgCagTa659659B.1.177.201
ORF1ab/nsp5A-B191A191VgCagTa518522AY.40.000806
ORF1ab/nsp5A-B191A191VgCAgTG4522AY.40.000006
ORF1ab/nsp5A-B191A191VgCagTa495495B.1.1.70.000443
ORF1ab/nsp5A-B191A191AgcAgcG324398All0.000062
ORF1ab/nsp5A-B191A191AgcAgcT69398All0.000013
ORF1ab/nsp5A-B191A191AgcAgcC5398All0.000001
ORF1ab/nsp5A-B191A191VgCagTa381381B.1.20.003355
ORF1ab/nsp5A-B191A191TGcaAca349350All0.000067
ORF1ab/nsp5A-B191A191TGcAAcG1350All0
ORF1ab/nsp5A-B191A191VgCagTa232232B.1.617.20.000874
ORF1ab/nsp5A-B191A191VgCagTa197197AY.250.001185
ORF1ab/nsp5A-B191A191VgCagTa183183AY.1030.001136
ORF1ab/nsp5A-B191A191VgCagTa169169B.10.001548
ORF1ab/nsp5A-B191A191VgCagTa165165B.1.2060.134584
ORF1ab/nsp5A-B191A191VgCagTa162162B.1.1770.002133
ORF1ab/nsp5A-B191A191AgcAgcG133133AY.40.000207
ORF1ab/nsp5A-B191A191VgCagTa117117AY.430.000518
ORF1ab/nsp5A-B191A191VgCagTa111111AY.440.000676
ORF1ab/nsp5A-B191A191SGcaTca9798All0.000019
ORF1ab/nsp5A-B191A191SGcATcG198All0
ORF1ab/nsp5A-B191A191VgCagTa9595B.1.1.5190.003773
ORF1ab/nsp5A-B191A191AgcAgcG8989B.1.177.860.016327
ORF1ab/nsp5A-B191A191VgCagTa8585B.1.10.001542
ORF1ab/nsp5A-B191A191TGcaAca8485B.1.1.70.000075
ORF1ab/nsp5A-B191A191TGcAAcG185B.1.1.70.000001
ORF1ab/nsp5A-B191A191VgCagTa8585B.1.4290.002
ORF1ab/nsp5A-B191A191VgCagTa8181AY.30.000806
ORF1ab/nsp5A-B191A191VgCagTa7272AY.420.002897
ORF1ab/nsp5A-B191A191delGCA---7070All0.000013
ORF1ab/nsp5A-B191A191AgcAgcT5068B.1.1.70.000045
ORF1ab/nsp5A-B191A191AgcAgcG1468B.1.1.70.000013
ORF1ab/nsp5A-B191A191AgcAgcC468B.1.1.70.000004
ORF1ab/nsp5A-B191A191TGcaAca5656AY.40.000087
ORF1ab/nsp5A-B191A191VgCagTa5252AY.4.30.043771
ORF1ab/nsp5A-B191A191VgCagTa4444AY.50.000909
ORF1ab/nsp5A-B191A191VgCagTa4444B.1.360.00642
ORF1ab/nsp5A-B191A191TGcaAca4444B.1.617.20.000166
ORF1ab/nsp5A-B191A191VgCagTa3939B.1.1.931
ORF1ab/nsp5A-B191A191VgCagTa3737B.1.1.3280.627119
ORF1ab/nsp5A-B191A191VgCagTa3737B.1.1600.001154
ORF1ab/nsp5A-B191A191VgCagTa3737B.1.3510.0011
ORF1ab/nsp5A-B191A191VgCagTa3535B.1.177.210.002676
ORF1ab/nsp5A-B191A191VgCagTa3333AY.850.014097
ORF1ab/nsp5A-B191A191VgCagTa2828AY.390.000692
ORF1ab/nsp5A-B191A191VgCagTa2828B.1.5260.000658
ORF1ab/nsp5A-B191A191SGcaTca2727B.1.1.70.000024
ORF1ab/nsp5A-B191A191VgCagTa2626B.1.5610.010322
ORF1ab/nsp5A-B191A191VgCagTa2525AY.4.20.000542
ORF1ab/nsp5A-B191A191VgCagTa2424AY.1020.000636
ORF1ab/nsp5A-B191A191VgCagTa2424B.1.1.410.151899
ORF1ab/nsp5A-B191A191VgCagTa2323AY.200.000894
ORF1ab/nsp5A-B191A191VgCagTa2222AY.60.000905
ORF1ab/nsp5A-B191A191VgCagTa2222B.1.160.90.158273
ORF1ab/nsp5A-B191A191VgCagTa2222B.1.2230.061111
ORF1ab/nsp5A-B191A191VgCagTa2222B.1.617.10.002837
ORF1ab/nsp5A-B191A191VgCagTa2121AY.260.000595
ORF1ab/nsp5A-B191A191VgCagTa2020AY.290.000315
ORF1ab/nsp5A-B191A191VgCagTa1919AY.39.10.000753
ORF1ab/nsp5A-B191A191VgCagTa1919AY.470.000591
ORF1ab/nsp5A-B191A191VgCagTa1919AY.980.001501
ORF1ab/nsp5A-B191A191delGCA---1919B.1.1.70.000017
ORF1ab/nsp5A-B191A191VgCagTa1818AY.90.001217
ORF1ab/nsp5A-B191A191VgCagTa1717AY.1000.000782
ORF1ab/nsp5A-B191A191SGcaTca1717AY.440.000103
ORF1ab/nsp5A-B191A191VgCagTa1717B.1.1.280.005291
ORF1ab/nsp5A-B191A191VgCagTa1717B.1.258.170.001768
ORF1ab/nsp5A-B191A191VgCagTa1717B.1.5960.001481
ORF1ab/nsp5A-B191A191VgCagTa1717R.10.00153
ORF1ab/nsp5A-B191A191VgCagTa1616D.20.001201
ORF1ab/nsp5A-B191A191GgCagGa1215All0.000002
ORF1ab/nsp5A-B191A191GgCAgGT215All0
ORF1ab/nsp5A-B191A191GgCAgGC115All0
ORF1ab/nsp5A-B191A191AgcAgcG1515AY.390.000371
ORF1ab/nsp5A-B191A191VgCagTa1515B.1.177.750.015609
ORF1ab/nsp5A-B191A191VgCagTa1515P.10.000236
ORF1ab/nsp5A-B191A191VgCagTa1414AY.1060.004689
ORF1ab/nsp5A-B191A191AgcAgcG1414AY.440.000085
ORF1ab/nsp5A-B191A191VgCagTa1414AY.460.001457
ORF1ab/nsp5A-B191A191VgCagTa1414AY.750.000784
ORF1ab/nsp5A-B191A191VgCagTa1414B.1.2580.000932
ORF1ab/nsp5A-B191A191VgCagTa1313B.1.1.2160.011576
ORF1ab/nsp5A-B191A191VgCagTa1313B.1.2340.001715
ORF1ab/nsp5A-B191A191VgCagTa1212B.1.177.70.001978
ORF1ab/nsp5A-B191A191VgCagTa1212B.1.2210.000852
ORF1ab/nsp5A-B191A191VgCagTa1212B.1.2430.000835
ORF1ab/nsp5A-B191A191VgCagTa1212B.1.258.160.01964
ORF1ab/nsp5A-B191A191AgcAgcT1212B.1.36.380.019704
ORF1ab/nsp5A-B191A191TGcaAca1212B.1.4290.000282
ORF1ab/nsp5A-B191A191VgCagTa1111AY.7.10.00124
ORF1ab/nsp5A-B191A191VgCagTa1111AY.9.20.000404
ORF1ab/nsp5A-B191A191VgCagTa1111AY.960.022822
ORF1ab/nsp5A-B191A191TGcaAca1111B.10.000101
ORF1ab/nsp5A-B191A191VgCagTa1111P.20.002053
ORF1ab/nsp5A-B191A191TGcaAca1010AY.670.004643
ORF1ab/nsp5A-B191A191VgCagTa1010B.1.1.4340.003486
ORF1ab/nsp5A-B191A191VgCagTa1010B.1.4280.010204
ORF1ab/nsp5A-B191A191TGcaAca1010P.10.000158
ORF1ab/nsp5A-B191A191VgCagTa99AY.1190.000318
ORF1ab/nsp5A-B191A191TGcaAca99AY.430.00004
ORF1ab/nsp5A-B191A191VgCagTa99AY.99.20.000829
ORF1ab/nsp5A-B191A191VgCagTa99B.1.1.2140.000499
ORF1ab/nsp5A-B191A191VgCagTa99B.1.2400.00194
ORF1ab/nsp5A-B191A191TGcaAca99B.1.619.10.005773
ORF1ab/nsp5A-B191A191VgCagTa88AY.1200.000297
ORF1ab/nsp5A-B191A191TGcaAca88AY.260.000226
ORF1ab/nsp5A-B191A191VgCagTa88AY.450.000973
ORF1ab/nsp5A-B191A191AgcAgcG88B.10.000073
ORF1ab/nsp5A-B191A191VgCagTa88B.1.1.2840.000859
ORF1ab/nsp5A-B191A191VgCagTa88B.1.177.860.001468
ORF1ab/nsp5A-B191A191VgCagTa88B.1.466.20.00313
ORF1ab/nsp5A-B191A191PGcaCca57All0.000001
ORF1ab/nsp5A-B191A191PGcACcT17All0
ORF1ab/nsp5A-B191A191PGcACcC17All0
ORF1ab/nsp5A-B191A191TGcaAca77AY.1030.000043
ORF1ab/nsp5A-B191A191VgCagTa77AY.230.000488
ORF1ab/nsp5A-B191A191GgCagGa77AY.250.000042
ORF1ab/nsp5A-B191A191TGcaAca77AY.30.00007
ORF1ab/nsp5A-B191A191VgCagTa77AY.330.000467
ORF1ab/nsp5A-B191A191VgCagTa77AY.410.002058
ORF1ab/nsp5A-B191A191VgCagTa77B.1.1.2320.012704
ORF1ab/nsp5A-B191A191VgCagTa77B.1.4270.000353
ORF1ab/nsp5A-B191A191VgCagTa77C.360.006375
ORF1ab/nsp5A-B191A191VgCagTa77N.80.21875
ORF1ab/nsp5A-B191A191SGcaTca66AY.1030.000037
ORF1ab/nsp5A-B191A191SGcaTca66AY.40.000009
ORF1ab/nsp5A-B191A191VgCagTa66AY.46.60.000433
ORF1ab/nsp5A-B191A191VgCagTa66AY.9.10.000502
ORF1ab/nsp5A-B191A191VgCagTa66B.1.1.330.002525
ORF1ab/nsp5A-B191A191TGcaAca66B.1.2340.000792
ORF1ab/nsp5A-B191A191VgCagTa66B.1.3960.004234
ORF1ab/nsp5A-B191A191VgCagTa66B.1.6090.002876
ORF1ab/nsp5A-B191A191AgcAgcG56B.1.617.20.000019
ORF1ab/nsp5A-B191A191AgcAgcT16B.1.617.20.000004
ORF1ab/nsp5A-B191A191VgCagTa66B.390.013986
ORF1ab/nsp5A-B191A191SGcaTca66P.10.000095
ORF1ab/nsp5A-B191A191AgcAgcG66P.10.000095
ORF1ab/nsp5A-B191A191TGcaAca55AY.1020.000133
ORF1ab/nsp5A-B191A191VgCagTa55AY.1140.001156
ORF1ab/nsp5A-B191A191delGCA---55AY.250.00003
ORF1ab/nsp5A-B191A191VgCagTa55AY.300.001979
ORF1ab/nsp5A-B191A191TGcaAca55AY.4.20.000108
ORF1ab/nsp5A-B191A191delGCA---55AZ.20.004105
ORF1ab/nsp5A-B191A191AgcAgcG55B.1.1770.000066
ORF1ab/nsp5A-B191A191VgCagTa55B.1.2320.002687
ORF1ab/nsp5A-B191A191VgCagTa55B.1.4970.001574
ORF1ab/nsp5A-B191A191VgCagTa55B.1.5250.000566
ORF1ab/nsp5A-B191A191VgCagTa55B.1.5320.031056
ORF1ab/nsp5A-B191A191VgCagTa55B.1.5880.00455
ORF1ab/nsp5A-B191A191VgCagTa55B.1.6370.000365
ORF1ab/nsp5A-B191A191delGCA---440.222222
ORF1ab/nsp5A-B191A191GgCagGa240.111111
ORF1ab/nsp5A-B191A191GgCAgGT140.055556
ORF1ab/nsp5A-B191A191GgCAgGC140.055556
ORF1ab/nsp5A-B191A191RGCACGT140.055556
ORF1ab/nsp5A-B191A191RGCaCGa140.055556
ORF1ab/nsp5A-B191A191RGCACGC140.055556
ORF1ab/nsp5A-B191A191RGCaAGa140.055556
ORF1ab/nsp5A-B191A191del2gCAg--44All0.000001
ORF1ab/nsp5A-B191A191RGCACGC14All0
ORF1ab/nsp5A-B191A191RGCaAGa14All0
ORF1ab/nsp5A-B191A191RGCACGT14All0
ORF1ab/nsp5A-B191A191RGCaCGa14All0
ORF1ab/nsp5A-B191A191VgCagTa44AY.1180.000251
ORF1ab/nsp5A-B191A191TGcaAca44AY.250.000024
ORF1ab/nsp5A-B191A191VgCagTa44AY.360.000593
ORF1ab/nsp5A-B191A191VgCagTa44AY.370.001264
ORF1ab/nsp5A-B191A191VgCagTa44AY.46.40.000658
ORF1ab/nsp5A-B191A191VgCagTa44AY.680.001095
ORF1ab/nsp5A-B191A191VgCagTa44AY.840.00175
ORF1ab/nsp5A-B191A191VgCagTa44B0.000511
ORF1ab/nsp5A-B191A191VgCagTa44B.1.1.1890.006051
ORF1ab/nsp5A-B191A191VgCagTa44B.1.1.2220.000816
ORF1ab/nsp5A-B191A191VgCagTa44B.1.1.250.002274
ORF1ab/nsp5A-B191A191VgCagTa44B.1.1.500.002716
ORF1ab/nsp5A-B191A191VgCagTa44B.1.1.630.001543
ORF1ab/nsp5A-B191A191SGcaTca44B.1.20.000035
ORF1ab/nsp5A-B191A191VgCagTa44B.1.220.00527
ORF1ab/nsp5A-B191A191VgCagTa44B.1.3460.005242
ORF1ab/nsp5A-B191A191VgCagTa44B.1.36.290.002069
ORF1ab/nsp5A-B191A191VgCagTa44B.1.3660.019512
ORF1ab/nsp5A-B191A191VgCagTa44B.1.370.058824
ORF1ab/nsp5A-B191A191VgCagTa44B.1.4040.005208
ORF1ab/nsp5A-B191A191VgCagTa44B.1.5090.003463
ORF1ab/nsp5A-B191A191TGcaAca44B.1.5170.001708
ORF1ab/nsp5A-B191A191delGCA---44B.1.617.20.000015
ORF1ab/nsp5A-B191A191VgCagTa44B.1.6210.000354
ORF1ab/nsp5A-B191A191PGcACcT130.055556
ORF1ab/nsp5A-B191A191PGcACcC130.055556
ORF1ab/nsp5A-B191A191PGcaCca130.055556
ORF1ab/nsp5A-B191A191TGcaAca33A.2.5.20.004717
ORF1ab/nsp5A-B191A191del1gcAgc-23All0
ORF1ab/nsp5A-B191A191del1Gca-ca13All0
ORF1ab/nsp5A-B191A191AgcAgcG23AY.250.000012
ORF1ab/nsp5A-B191A191AgcAgcT13AY.250.000006
ORF1ab/nsp5A-B191A191VgCagTa33AY.340.000291
ORF1ab/nsp5A-B191A191TGcaAca33AY.4.50.000322
ORF1ab/nsp5A-B191A191AgcAgcG33AY.430.000013
ORF1ab/nsp5A-B191A191delGCA---33AY.430.000013
ORF1ab/nsp5A-B191A191VgCagTa33AY.540.000286
ORF1ab/nsp5A-B191A191VgCagTa33AY.75.10.000541
ORF1ab/nsp5A-B191A191VgCagTa33AY.800.003386
ORF1ab/nsp5A-B191A191VgCagTa33AY.920.000862
ORF1ab/nsp5A-B191A191SGcaTca33B.10.000027
ORF1ab/nsp5A-B191A191delGCA---33B.1.10.000054
ORF1ab/nsp5A-B191A191AgcAgcG33B.1.1.250.001706
ORF1ab/nsp5A-B191A191VgCagTa33B.1.1.3060.001315
ORF1ab/nsp5A-B191A191TGcaAca33B.1.1.5190.000119
ORF1ab/nsp5A-B191A191TGcaAca33B.1.177.600.000655
ORF1ab/nsp5A-B191A191VgCagTa33B.1.177.810.000568
ORF1ab/nsp5A-B191A191TGcaAca33B.1.20.000026
ORF1ab/nsp5A-B191A191AgcAgcT23B.1.20.000018
ORF1ab/nsp5A-B191A191AgcAgcG13B.1.20.000009
ORF1ab/nsp5A-B191A191VgCagTa33B.1.4000.001287
ORF1ab/nsp5A-B191A191VgCagTa33B.1.438.10.000322
ORF1ab/nsp5A-B191A191VgCagTa33B.1.5460.011111
ORF1ab/nsp5A-B191A191SGcaTca33B.1.5510.003871
ORF1ab/nsp5A-B191A191VgCagTa33B.1.5950.000783
ORF1ab/nsp5A-B191A191VgCagTa33B.1.810.06383
ORF1ab/nsp5A-B191A191VgCagTa33P.1.140.000143
ORF1ab/nsp5A-B191A191AgcAgcC120.055556
ORF1ab/nsp5A-B191A191AgcAgcT120.055556
ORF1ab/nsp5A-B191A191VgCagTa22A.2.50.000998
ORF1ab/nsp5A-B191A191VgCagTa22AL.10.025974
ORF1ab/nsp5A-B191A191EgCagAa22All0
ORF1ab/nsp5A-B191A191VgCagTa22AY.1050.001286
ORF1ab/nsp5A-B191A191VgCagTa22AY.1100.000225
ORF1ab/nsp5A-B191A191VgCagTa22AY.1160.000574
ORF1ab/nsp5A-B191A191AgcAgcG22AY.1210.000271
ORF1ab/nsp5A-B191A191VgCagTa22AY.240.000862
ORF1ab/nsp5A-B191A191PGcaCca22AY.250.000012
ORF1ab/nsp5A-B191A191TGcaAca22AY.290.000032
ORF1ab/nsp5A-B191A191VgCagTa22AY.3.10.000171
ORF1ab/nsp5A-B191A191VgCagTa22AY.34.10.00102
ORF1ab/nsp5A-B191A191VgCagTa22AY.350.000466
ORF1ab/nsp5A-B191A191TGcaAca22AY.390.000049
ORF1ab/nsp5A-B191A191delGCA---22AY.40.000003
ORF1ab/nsp5A-B191A191delGCA---22AY.4.50.000215
ORF1ab/nsp5A-B191A191TGcaAca22AY.450.000243
ORF1ab/nsp5A-B191A191VgCagTa22AY.46.20.001271
ORF1ab/nsp5A-B191A191VgCagTa22AY.46.50.000397
ORF1ab/nsp5A-B191A191TGcaAca22AY.50.000041
ORF1ab/nsp5A-B191A191VgCagTa22AY.610.00021
ORF1ab/nsp5A-B191A191VgCagTa22AY.690.000373
ORF1ab/nsp5A-B191A191VgCagTa22AY.740.000231
ORF1ab/nsp5A-B191A191VgCagTa22AY.790.002421
ORF1ab/nsp5A-B191A191TGcaAca22AY.800.002257
ORF1ab/nsp5A-B191A191VgCagTa22AY.910.001461
ORF1ab/nsp5A-B191A191VgCagTa22AY.98.10.000097
ORF1ab/nsp5A-B191A191delGCA---22B.10.000018
ORF1ab/nsp5A-B191A191TGcaAca22B.1.10.000036
ORF1ab/nsp5A-B191A191VgCagTa22B.1.1.1410.004024
ORF1ab/nsp5A-B191A191VgCagTa22B.1.1.3260.003521
ORF1ab/nsp5A-B191A191VgCagTa22B.1.1.3910.017094
ORF1ab/nsp5A-B191A191VgCagTa22B.1.1.4160.00181
ORF1ab/nsp5A-B191A191VgCagTa22B.1.1.4320.002532
ORF1ab/nsp5A-B191A191VgCagTa22B.1.1.470.010695
ORF1ab/nsp5A-B191A191VgCagTa22B.1.1.5210.010695
ORF1ab/nsp5A-B191A191PGcaCca22B.1.1.70.000002
ORF1ab/nsp5A-B191A191GgCagGa12B.1.1.70.000001
ORF1ab/nsp5A-B191A191GgCAgGT12B.1.1.70.000001
ORF1ab/nsp5A-B191A191TGcaAca22B.1.1.700.000682
ORF1ab/nsp5A-B191A191VgCagTa22B.1.1470.001512
ORF1ab/nsp5A-B191A191VgCagTa22B.1.177.120.000303
ORF1ab/nsp5A-B191A191VgCagTa22B.1.177.520.003515
ORF1ab/nsp5A-B191A191AgcAgcG22B.1.177.600.000437
ORF1ab/nsp5A-B191A191VgCagTa22B.1.177.600.000437
ORF1ab/nsp5A-B191A191VgCagTa22B.1.1990.008264
ORF1ab/nsp5A-B191A191VgCagTa22B.1.2360.004107
ORF1ab/nsp5A-B191A191TGcaAca22B.1.2430.000139
ORF1ab/nsp5A-B191A191AgcAgcG22B.1.258.170.000208
ORF1ab/nsp5A-B191A191VgCagTa22B.1.3550.022222
ORF1ab/nsp5A-B191A191VgCagTa22B.1.36.160.002849
ORF1ab/nsp5A-B191A191VgCagTa22B.1.36.310.003503
ORF1ab/nsp5A-B191A191VgCagTa22B.1.36.80.002
ORF1ab/nsp5A-B191A191VgCagTa22B.1.4260.002018
ORF1ab/nsp5A-B191A191AgcAgcG22B.1.4290.000047
ORF1ab/nsp5A-B191A191SGcaTca22B.1.4360.002058
ORF1ab/nsp5A-B191A191VgCagTa22B.1.4480.005249
ORF1ab/nsp5A-B191A191VgCagTa22B.1.4990.002101
ORF1ab/nsp5A-B191A191TGcaAca22B.1.5360.047619
ORF1ab/nsp5A-B191A191delGCA---22B.1.5610.000794
ORF1ab/nsp5A-B191A191TGcaAca22B.1.5960.000174
ORF1ab/nsp5A-B191A191VgCagTa22B.1.930.001867
ORF1ab/nsp5A-B191A191AgcAgcG22B.400.000729
ORF1ab/nsp5A-B191A191VgCagTa22C.370.000232
ORF1ab/nsp5A-B191A191VgCagTa22Q.80.00033
ORF1ab/nsp5A-B191A191SGcaTca22Q.80.00033
ORF1ab/nsp5A-B191A191TGcaAca110.055556
ORF1ab/nsp5A-B191A191VgCagTa11A0.000387
ORF1ab/nsp5A-B191A191VgCagTa11A.10.000282
ORF1ab/nsp5A-B191A191VgCagTa11A.2.20.001689
ORF1ab/nsp5A-B191A191VgCagTa11A.2.30.004739
ORF1ab/nsp5A-B191A191TGcaAca11A.250.018182
ORF1ab/nsp5A-B191A191VgCagTa11A.270.001656
ORF1ab/nsp5A-B191A191VgCagTa11A.280.002646
ORF1ab/nsp5A-B191A191AgcAgcG11AD.20.000219
ORF1ab/nsp5A-B191A191VgCagTa11AD.20.000219
ORF1ab/nsp5A-B191A191LGCATTG11All0
ORF1ab/nsp5A-B191A191VgCagTa11AU.30.00211
ORF1ab/nsp5A-B191A191TGcaAca11AY.1000.000046
ORF1ab/nsp5A-B191A191VgCagTa11AY.1010.00049
ORF1ab/nsp5A-B191A191AgcAgcG11AY.1020.000027
ORF1ab/nsp5A-B191A191SGcaTca11AY.1020.000027
ORF1ab/nsp5A-B191A191TGcaAca11AY.1050.000643
ORF1ab/nsp5A-B191A191TGcaAca11AY.1080.001103
ORF1ab/nsp5A-B191A191AgcAgcG11AY.1090.00074
ORF1ab/nsp5A-B191A191VgCagTa11AY.1110.000183
ORF1ab/nsp5A-B191A191AgcAgcG11AY.1140.000231
ORF1ab/nsp5A-B191A191VgCagTa11AY.1170.000085
ORF1ab/nsp5A-B191A191TGcaAca11AY.1200.000037
ORF1ab/nsp5A-B191A191delGCA---11AY.1200.000037
ORF1ab/nsp5A-B191A191VgCagTa11AY.120.10.000321
ORF1ab/nsp5A-B191A191SGcaTca11AY.1210.000135
ORF1ab/nsp5A-B191A191VgCagTa11AY.1210.000135
ORF1ab/nsp5A-B191A191VgCagTa11AY.130.000161
ORF1ab/nsp5A-B191A191TGcaAca11AY.140.000088
ORF1ab/nsp5A-B191A191VgCagTa11AY.140.000088
ORF1ab/nsp5A-B191A191VgCagTa11AY.160.00038
ORF1ab/nsp5A-B191A191VgCagTa11AY.20.000356
ORF1ab/nsp5A-B191A191AgcAgcG11AY.200.000039
ORF1ab/nsp5A-B191A191GgCagGa11AY.230.00007
ORF1ab/nsp5A-B191A191SGcaTca11AY.250.000006
ORF1ab/nsp5A-B191A191SGcaTca11AY.290.000016
ORF1ab/nsp5A-B191A191AgcAgcG11AY.30.00001
ORF1ab/nsp5A-B191A191TGcaAca11AY.360.000148
ORF1ab/nsp5A-B191A191SGcaTca11AY.390.000025
ORF1ab/nsp5A-B191A191VgCagTa11AY.4.40.000409
ORF1ab/nsp5A-B191A191delGCA---11AY.420.00004
ORF1ab/nsp5A-B191A191SGcaTca11AY.420.00004
ORF1ab/nsp5A-B191A191SGcaTca11AY.430.000004
ORF1ab/nsp5A-B191A191del2gCAg--11AY.440.000006
ORF1ab/nsp5A-B191A191TGcaAca11AY.470.000031
ORF1ab/nsp5A-B191A191VgCagTa11AY.480.000465
ORF1ab/nsp5A-B191A191AgcAgcG11AY.50.000021
ORF1ab/nsp5A-B191A191VgCagTa11AY.5.30.000337
ORF1ab/nsp5A-B191A191VgCagTa11AY.5.40.000277
ORF1ab/nsp5A-B191A191TGcaAca11AY.510.000909
ORF1ab/nsp5A-B191A191TGcaAca11AY.560.001605
ORF1ab/nsp5A-B191A191VgCagTa11AY.590.00053
ORF1ab/nsp5A-B191A191SGcaTca11AY.60.000041
ORF1ab/nsp5A-B191A191delGCA---11AY.600.000938
ORF1ab/nsp5A-B191A191SGcaTca11AY.610.000105
ORF1ab/nsp5A-B191A191VgCagTa11AY.640.000595
ORF1ab/nsp5A-B191A191VgCagTa11AY.650.000533
ORF1ab/nsp5A-B191A191VgCagTa11AY.670.000464
ORF1ab/nsp5A-B191A191VgCagTa11AY.70.000196
ORF1ab/nsp5A-B191A191delGCA---11AY.750.000056
ORF1ab/nsp5A-B191A191SGcaTca11AY.810.001992
ORF1ab/nsp5A-B191A191VgCagTa11AY.930.000273
ORF1ab/nsp5A-B191A191SGcaTca11AY.980.000079
ORF1ab/nsp5A-B191A191delGCA---11AY.990.001049
ORF1ab/nsp5A-B191A191TGcaAca11AY.99.20.000092
ORF1ab/nsp5A-B191A191SGcaTca11AY.99.20.000092
ORF1ab/nsp5A-B191A191TGcaAca11B0.000128
ORF1ab/nsp5A-B191A191AgcAgcT11B.1.10.000018
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.1250.010204
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.130.035714
ORF1ab/nsp5A-B191A191delGCA---11B.1.1.1370.0125
ORF1ab/nsp5A-B191A191AgcAgcG11B.1.1.1370.0125
ORF1ab/nsp5A-B191A191TGcaAca11B.1.1.1530.001095
ORF1ab/nsp5A-B191A191delGCA---11B.1.1.1590.004673
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.1610.003534
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.1920.002309
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.1960.005714
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.2070.001182
ORF1ab/nsp5A-B191A191delGCA---11B.1.1.2360.006897
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.2410.00207
ORF1ab/nsp5A-B191A191del2gCAg--11B.1.1.2680.014925
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.2730.006757
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.2770.000759
ORF1ab/nsp5A-B191A191SGcaTca11B.1.1.280.000311
ORF1ab/nsp5A-B191A191AgcAgcG11B.1.1.280.000311
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.2880.001916
ORF1ab/nsp5A-B191A191delGCA---11B.1.1.2880.001916
ORF1ab/nsp5A-B191A191TGcaAca11B.1.1.3060.000438
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.3170.000412
ORF1ab/nsp5A-B191A191EgCagAa11B.1.1.3340.016393
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.3420.0625
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.3480.000796
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.3590.027778
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.3630.005988
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.3720.000689
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.3890.006061
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.390.00051
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.3970.002252
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1.400.034483
ORF1ab/nsp5A-B191A191del2gCAg--11B.1.1.4020.011111
ORF1ab/nsp5A-B191A191TGcaAca11B.1.1.4340.000349
ORF1ab/nsp5A-B191A191AgcAgcG11B.1.1.5190.00004
ORF1ab/nsp5A-B191A191del1gcAgc-11B.1.1.70.000001
ORF1ab/nsp5A-B191A191VgCagTa11B.1.110.30.000718
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1340.005464
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1570.002985
ORF1ab/nsp5A-B191A191AgcAgcG11B.1.1600.000031
ORF1ab/nsp5A-B191A191VgCagTa11B.1.160.290.004219
ORF1ab/nsp5A-B191A191delGCA---11B.1.1770.000013
ORF1ab/nsp5A-B191A191VgCagTa11B.1.177.150.000631
ORF1ab/nsp5A-B191A191SGcaTca11B.1.177.230.003236
ORF1ab/nsp5A-B191A191VgCagTa11B.1.177.30.007634
ORF1ab/nsp5A-B191A191VgCagTa11B.1.177.40.000211
ORF1ab/nsp5A-B191A191SGcaTca11B.1.177.40.000211
ORF1ab/nsp5A-B191A191VgCagTa11B.1.177.410.0025
ORF1ab/nsp5A-B191A191del1gcAgc-11B.1.177.510.004566
ORF1ab/nsp5A-B191A191VgCagTa11B.1.177.700.005917
ORF1ab/nsp5A-B191A191delGCA---11B.1.177.760.002494
ORF1ab/nsp5A-B191A191VgCagTa11B.1.177.870.000728
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1800.05
ORF1ab/nsp5A-B191A191VgCagTa11B.1.1920.009259
ORF1ab/nsp5A-B191A191VgCagTa11B.1.2010.005682
ORF1ab/nsp5A-B191A191GgCagGa11B.1.2210.000071
ORF1ab/nsp5A-B191A191VgCagTa11B.1.221.20.004016
ORF1ab/nsp5A-B191A191SGcaTca11B.1.2340.000132
ORF1ab/nsp5A-B191A191TGcaAca11B.1.2580.000067
ORF1ab/nsp5A-B191A191delGCA---11B.1.2580.000067
ORF1ab/nsp5A-B191A191VgCagTa11B.1.258.140.00098
ORF1ab/nsp5A-B191A191VgCagTa11B.1.258.220.002667
ORF1ab/nsp5A-B191A191delGCA---11B.1.258.30.001675
ORF1ab/nsp5A-B191A191VgCagTa11B.1.258.30.001675
ORF1ab/nsp5A-B191A191VgCagTa11B.1.2600.003344
ORF1ab/nsp5A-B191A191VgCagTa11B.1.2650.001271
ORF1ab/nsp5A-B191A191VgCagTa11B.1.2700.005618
ORF1ab/nsp5A-B191A191VgCagTa11B.1.2980.002114
ORF1ab/nsp5A-B191A191VgCagTa11B.1.30.002618
ORF1ab/nsp5A-B191A191VgCagTa11B.1.3110.000275
ORF1ab/nsp5A-B191A191VgCagTa11B.1.3250.006897
ORF1ab/nsp5A-B191A191VgCagTa11B.1.3280.03125
ORF1ab/nsp5A-B191A191VgCagTa11B.1.3360.002439
ORF1ab/nsp5A-B191A191VgCagTa11B.1.3370.005587
ORF1ab/nsp5A-B191A191AgcAgcG11B.1.3510.00003
ORF1ab/nsp5A-B191A191AgcAgcG11B.1.351.30.000876
ORF1ab/nsp5A-B191A191AgcAgcG11B.1.360.000146
ORF1ab/nsp5A-B191A191delGCA---11B.1.360.000146
ORF1ab/nsp5A-B191A191SGcaTca11B.1.36.240.006173
ORF1ab/nsp5A-B191A191VgCagTa11B.1.36.70.004
ORF1ab/nsp5A-B191A191VgCagTa11B.1.36.90.003215
ORF1ab/nsp5A-B191A191VgCagTa11B.1.3690.000285
ORF1ab/nsp5A-B191A191VgCagTa11B.1.3810.007812
ORF1ab/nsp5A-B191A191VgCagTa11B.1.3850.010638
ORF1ab/nsp5A-B191A191VgCagTa11B.1.3890.001002
ORF1ab/nsp5A-B191A191VgCagTa11B.1.3900.010638
ORF1ab/nsp5A-B191A191AgcAgcG11B.1.4040.001302
ORF1ab/nsp5A-B191A191SGcATcG11B.1.4110.003704
ORF1ab/nsp5A-B191A191VgCagTa11B.1.4330.003195
ORF1ab/nsp5A-B191A191VgCagTa11B.1.4620.007246
ORF1ab/nsp5A-B191A191VgCagTa11B.1.4650.003802
ORF1ab/nsp5A-B191A191AgcAgcT11B.1.466.20.000391
ORF1ab/nsp5A-B191A191VgCagTa11B.1.4710.002732
ORF1ab/nsp5A-B191A191VgCagTa11B.1.5170.000427
ORF1ab/nsp5A-B191A191VgCagTa11B.1.5210.004975
ORF1ab/nsp5A-B191A191VgCagTa11B.1.5240.001406
ORF1ab/nsp5A-B191A191TGcaAca11B.1.5260.000024
ORF1ab/nsp5A-B191A191VgCagTa11B.1.5270.003704
ORF1ab/nsp5A-B191A191EgCagAa11B.1.5440.006024
ORF1ab/nsp5A-B191A191VgCagTa11B.1.5470.02439
ORF1ab/nsp5A-B191A191VgCagTa11B.1.5510.00129
ORF1ab/nsp5A-B191A191VgCagTa11B.1.564.10.001577
ORF1ab/nsp5A-B191A191VgCagTa11B.1.5670.003333
ORF1ab/nsp5A-B191A191VgCagTa11B.1.5750.000303
ORF1ab/nsp5A-B191A191VgCagTa11B.1.5800.004065
ORF1ab/nsp5A-B191A191AgcAgcG11B.1.5910.010638
ORF1ab/nsp5A-B191A191TGcaAca11B.1.595.30.026316
ORF1ab/nsp5A-B191A191del2gCAg--11B.1.5960.000087
ORF1ab/nsp5A-B191A191VgCagTa11B.1.6030.010638
ORF1ab/nsp5A-B191A191SGcaTca11B.1.617.10.000129
ORF1ab/nsp5A-B191A191del1Gca-ca11B.1.617.20.000004
ORF1ab/nsp5A-B191A191SGcaTca11B.1.617.20.000004
ORF1ab/nsp5A-B191A191LGCATTG11B.1.617.20.000004
ORF1ab/nsp5A-B191A191TGcaAca11B.1.6190.000871
ORF1ab/nsp5A-B191A191VgCagTa11B.1.619.10.000641
ORF1ab/nsp5A-B191A191TGcaAca11B.1.6210.000089
ORF1ab/nsp5A-B191A191VgCagTa11B.1.6280.000352
ORF1ab/nsp5A-B191A191SGcaTca11B.1.9.40.006135
ORF1ab/nsp5A-B191A191VgCagTa11B.4.80.071429
ORF1ab/nsp5A-B191A191VgCagTa11B.400.000364
ORF1ab/nsp5A-B191A191TGcaAca11B.550.00295
ORF1ab/nsp5A-B191A191VgCagTa11B.550.00295
ORF1ab/nsp5A-B191A191VgCagTa11B.60.00091
ORF1ab/nsp5A-B191A191VgCagTa11B.6.60.000889
ORF1ab/nsp5A-B191A191VgCagTa11C.350.000774
ORF1ab/nsp5A-B191A191delGCA---11C.360.000911
ORF1ab/nsp5A-B191A191VgCagTa11C.36.10.004149
ORF1ab/nsp5A-B191A191VgCagTa11N.30.005814
ORF1ab/nsp5A-B191A191VgCagTa11N.40.004255
ORF1ab/nsp5A-B191A191delGCA---11N.40.004255
ORF1ab/nsp5A-B191A191VgCagTa11N.50.001767
ORF1ab/nsp5A-B191A191delGCA---11P.1.10.000318
ORF1ab/nsp5A-B191A191VgCagTa11P.1.100.000269
ORF1ab/nsp5A-B191A191TGcaAca11P.1.140.000048
ORF1ab/nsp5A-B191A191SGcaTca11P.1.140.000048
ORF1ab/nsp5A-B191A191VgCagTa11P.1.150.000232
ORF1ab/nsp5A-B191A191VgCagTa11P.1.170.000162
ORF1ab/nsp5A-B191A191VgCagTa11P.1.17.10.000875
ORF1ab/nsp5A-B191A191VgCagTa11P.1.70.000319
ORF1ab/nsp5A-B191A191VgCagTa11P.30.001595
ORF1ab/nsp5A-B191A191VgCagTa11Q.10.000126
ORF1ab/nsp5A-B191A191delGCA---11Q.10.000126
ORF1ab/nsp5A-B191A191delGCA---11Q.20.000613