CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 18 | V18V | V3281V | syn | gtA | gtG | 3930 | 3914 | 0.995929 | 10106-10108 |
ORF1ab/nsp5A-B | 18 | V18V | V3281V | syn | gtA | gtT | 3930 | 13 | 0.00330789 | 10106-10108 |
ORF1ab/nsp5A-B | 18 | V18V | V3281V | syn | gtA | gtC | 3930 | 3 | 0.000763359 | 10106-10108 |
ORF1ab/nsp5A-B | 18 | V18I | V3281I | nonsyn | Gta | Ata | 604 | 604 | 1 | 10106-10108 |
ORF1ab/nsp5A-B | 18 | V18A | V3281A | nonsyn | gTa | gCa | 198 | 198 | 1 | 10106-10108 |
ORF1ab/nsp5A-B | 18 | V18L | V3281L | nonsyn | Gta | Tta | 143 | 133 | 0.93007 | 10106-10108 |
ORF1ab/nsp5A-B | 18 | V18L | V3281L | nonsyn | Gta | Cta | 143 | 10 | 0.0699301 | 10106-10108 |
ORF1ab/nsp5A-B | 18 | V18del | V3281del | del | GTA | --- | 47 | 47 | 1 | 10106-10108 |
ORF1ab/nsp5A-B | 18 | V18del2 | V3281del2 | del | gTA | g-- | 4 | 4 | 1 | 10106-10108 |
ORF1ab/nsp5A-B | 18 | V18del1 | V3281del1 | del | gtA | gt- | 1 | 1 | 1 | 10106-10108 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 3914 | 3930 | All | 0.000749 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtT | 13 | 3930 | All | 0.000002 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtC | 3 | 3930 | All | 0.000001 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 3588 | 3588 | B.1.258.17 | 0.373051 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 604 | 604 | All | 0.000116 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 198 | 198 | All | 0.000038 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 173 | 173 | B.1.617.2 | 0.000651 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 166 | 166 | AY.20 | 0.006452 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 133 | 143 | All | 0.000025 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Cta | 10 | 143 | All | 0.000002 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 62 | 62 | B.1.258 | 0.004126 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 61 | 61 | AY.103 | 0.000379 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 47 | 47 | All | 0.000009 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 45 | 45 | AY.4 | 0.00007 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 39 | 40 | B.1.1.7 | 0.000035 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtT | 1 | 40 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 38 | 38 | B.1 | 0.000348 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 32 | 32 | B.1.1.403 | 0.820513 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 29 | 29 | AY.4 | 0.000045 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 27 | 27 | AY.25 | 0.000162 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 25 | 25 | B.1.258 | 0.001664 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 23 | 23 | AY.4 | 0.000036 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 22 | 22 | B.1.243 | 0.001531 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 17 | 17 | AY.29 | 0.000268 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 14 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Cta | 1 | 15 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 14 | 14 | B.1.1 | 0.000254 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 14 | 14 | B.1.2 | 0.000123 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 12 | 13 | D.2 | 0.0009 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Cta | 1 | 13 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 12 | 12 | B | 0.001534 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 11 | 11 | B.1.234 | 0.001451 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 11 | 11 | B.1.258 | 0.000732 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 10 | 10 | AY.117 | 0.000845 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 9 | 10 | B.1.160 | 0.000281 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtT | 1 | 10 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 10 | 10 | B.1.36 | 0.001459 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 9 | 9 | AY.117 | 0.000761 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 9 | 9 | B.1.258.24 | 0.096774 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtT | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 7 | 7 | AY.5.4 | 0.001937 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 7 | 7 | B.4.1 | 0.132075 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 6 | 6 | AY.48 | 0.002791 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 4 | 5 | B.1.1 | 0.000073 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtT | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp5A-B | 18 | V18del2 | gTA | g-- | 4 | 4 | All | 0.000001 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 4 | 4 | AY.55 | 0.00367 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 4 | 4 | B | 0.000511 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 4 | 4 | B.1.590 | 0.018182 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtC | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 2 | 3 | B.1.351 | 0.000059 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtT | 1 | 3 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp5A-B | 18 | V18del2 | gTA | g-- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp5A-B | 18 | V18del2 | gTA | g-- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Cta | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 2 | 2 | B.1.630 | 0.010471 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Cta | 1 | 2 | P.1.14 | 0.000048 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 2 | P.1.14 | 0.000048 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Cta | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp5A-B | 18 | V18del1 | gtA | gt- | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Cta | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Cta | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Cta | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | B.1.591 | 0.010638 |
ORF1ab/nsp5A-B | 18 | V18del1 | gtA | gt- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Cta | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | B.37 | 0.028571 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp5A-B | 18 | V18A | gTa | gCa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp5A-B | 18 | V18L | Gta | Tta | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp5A-B | 18 | V18del | GTA | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp5A-B | 18 | V18V | gtA | gtG | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp5A-B | 18 | V18I | Gta | Ata | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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