CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 176 | D176D | D3439D | syn | gaC | gaT | 9178 | 9178 | 1 | 10580-10582 |
ORF1ab/nsp5A-B | 176 | D176del | D3439del | del | GAC | --- | 42 | 42 | 1 | 10580-10582 |
ORF1ab/nsp5A-B | 176 | D176Y | D3439Y | nonsyn | Gac | Tac | 31 | 31 | 1 | 10580-10582 |
ORF1ab/nsp5A-B | 176 | D176E | D3439E | nonsyn | gaC | gaA | 8 | 5 | 0.625 | 10580-10582 |
ORF1ab/nsp5A-B | 176 | D176E | D3439E | nonsyn | gaC | gaG | 8 | 3 | 0.375 | 10580-10582 |
ORF1ab/nsp5A-B | 176 | D176A | D3439A | nonsyn | gAc | gCc | 5 | 3 | 0.6 | 10580-10582 |
ORF1ab/nsp5A-B | 176 | D176A | D3439A | nonsyn | gAC | gCA | 5 | 2 | 0.4 | 10580-10582 |
ORF1ab/nsp5A-B | 176 | D176del1 | D3439del1 | del | Gac | -ac | 3 | 2 | 0.666667 | 10580-10582 |
ORF1ab/nsp5A-B | 176 | D176del1 | D3439del1 | del | GaC | -aA | 3 | 1 | 0.333333 | 10580-10582 |
ORF1ab/nsp5A-B | 176 | D176N | D3439N | nonsyn | Gac | Aac | 2 | 2 | 1 | 10580-10582 |
ORF1ab/nsp5A-B | 176 | D176H | D3439H | nonsyn | Gac | Cac | 2 | 2 | 1 | 10580-10582 |
ORF1ab/nsp5A-B | 176 | D176K | D3439K | nonsyn | GaC | AaA | 2 | 2 | 1 | 10580-10582 |
ORF1ab/nsp5A-B | 176 | D176G | D3439G | nonsyn | gAc | gGc | 1 | 1 | 1 | 10580-10582 |
ORF1ab/nsp5A-B | 176 | D176V | D3439V | nonsyn | gAc | gTc | 1 | 1 | 1 | 10580-10582 |
ORF1ab/nsp5A-B | 176 | D176del2 | D3439del2 | del | gAC | g-- | 1 | 1 | 1 | 10580-10582 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 9178 | 9178 | All | 0.001755 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2130 | 2130 | B.1.1.7 | 0.001907 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1131 | 1131 | B.1.367 | 0.896197 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 510 | 510 | B.1.2 | 0.004491 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 454 | 454 | AY.4 | 0.000707 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 425 | 425 | AY.43 | 0.001883 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 415 | 415 | B.1.1.189 | 0.627837 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 367 | 367 | B.1 | 0.003362 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 291 | 291 | B.1.1.519 | 0.011556 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 271 | 271 | AY.3 | 0.002695 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 228 | 228 | AY.103 | 0.001416 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 216 | 216 | B.1.597 | 1 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 187 | 187 | B.1.617.2 | 0.000704 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 171 | 171 | B.1.1.348 | 0.136146 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 144 | 144 | P.1 | 0.002269 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 141 | 141 | B.1.177 | 0.001857 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 79 | 79 | B.1.1 | 0.001433 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 79 | 79 | B.1.36 | 0.011526 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 77 | 77 | AY.44 | 0.000469 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 74 | 74 | AY.25 | 0.000445 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 72 | 72 | B.1.221 | 0.005114 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 65 | 65 | AY.39.1 | 0.002575 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 59 | 59 | AY.102 | 0.001564 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 58 | 58 | AY.6 | 0.002385 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 54 | 54 | B.1.429 | 0.001271 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 52 | 52 | B.1.177.86 | 0.00954 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 51 | 51 | B.1.1.434 | 0.017776 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 51 | 51 | B.1.40 | 1 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 48 | 48 | AY.67 | 0.022284 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 48 | 48 | B.1.1.222 | 0.009792 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 45 | 45 | B.1.177.60 | 0.00983 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 44 | 44 | AY.46.6 | 0.003177 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 42 | 42 | All | 0.000008 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 42 | 42 | B.1.1.28 | 0.013072 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 42 | 42 | B.1.243 | 0.002923 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 38 | 38 | AY.45 | 0.004624 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 36 | 36 | B.1.1.432 | 0.04557 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 34 | 34 | AY.9.2 | 0.001249 |
ORF1ab/nsp5A-B | 176 | D176Y | Gac | Tac | 31 | 31 | All | 0.000006 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 31 | 31 | C.37 | 0.003598 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 28 | 28 | B.1.1.214 | 0.001553 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 27 | 27 | B.1.177.72 | 0.091525 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 26 | 26 | AY.20 | 0.00101 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 21 | 21 | AY.39 | 0.000519 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 20 | 20 | B.1.351 | 0.000595 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 19 | 19 | AY.98.1 | 0.00092 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 18 | 18 | B.1.160.17 | 0.030612 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 18 | 18 | B.1.427 | 0.000909 |
ORF1ab/nsp5A-B | 176 | D176Y | Gac | Tac | 18 | 18 | D.2 | 0.001351 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 16 | 16 | AY.100 | 0.000736 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 15 | 15 | B.1.369 | 0.004278 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 15 | 15 | B.1.637 | 0.001096 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 14 | 14 | AY.119 | 0.000494 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 14 | 14 | B.1.36.38 | 0.022989 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 13 | 13 | B.1.526 | 0.000306 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 13 | 13 | B.1.577 | 0.008935 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 12 | 12 | AY.120 | 0.000446 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 12 | 12 | AY.4.5 | 0.00129 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 12 | 12 | AY.75 | 0.000672 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 11 | 11 | B.1.1.416 | 0.009955 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 10 | 10 | AY.4.2 | 0.000217 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 10 | 10 | AY.5 | 0.000206 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 10 | 10 | B.1.240 | 0.002156 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 9 | 9 | B.1.210 | 0.01919 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 9 | 9 | B.1.258.17 | 0.000936 |
ORF1ab/nsp5A-B | 176 | D176E | gaC | gaA | 5 | 8 | All | 0.000001 |
ORF1ab/nsp5A-B | 176 | D176E | gaC | gaG | 3 | 8 | All | 0.000001 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 8 | 8 | AY.16 | 0.003037 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 8 | 8 | B.1.416.1 | 0.0125 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 8 | 8 | P.2 | 0.001493 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 8 | 8 | Q.1 | 0.001011 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 7 | 7 | B.1.351.2 | 0.002118 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 7 | 7 | B.1.36.8 | 0.007 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 7 | 7 | B.1.399 | 0.01354 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 7 | 7 | B.1.400 | 0.003003 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 6 | 6 | AY.69 | 0.00112 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 6 | 6 | AY.92 | 0.001724 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 6 | 6 | B | 0.000767 |
ORF1ab/nsp5A-B | 176 | D176Y | Gac | Tac | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 6 | 6 | B.1.1.153 | 0.006572 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 6 | 6 | B.1.1.284 | 0.000644 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 6 | 6 | B.1.1.317 | 0.00247 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 6 | 6 | B.1.1.37 | 0.001157 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 6 | 6 | B.1.232 | 0.003224 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp5A-B | 176 | D176A | gAc | gCc | 3 | 5 | All | 0.000001 |
ORF1ab/nsp5A-B | 176 | D176A | gAC | gCA | 2 | 5 | All | 0 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 5 | 5 | AY.46.5 | 0.000992 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 5 | 5 | AY.68 | 0.001369 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 5 | 5 | AZ.2 | 0.004105 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 5 | 5 | B.1.1.433 | 0.007123 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 5 | 5 | B.1.177.63 | 0.013514 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 5 | 5 | C.30.1 | 0.033557 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp5A-B | 176 | D176A | gAC | gCA | 2 | 4 | 0.111111 | |
ORF1ab/nsp5A-B | 176 | D176A | gAc | gCc | 2 | 4 | 0.111111 | |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 4 | 4 | B.1.160.18 | 0.029197 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 4 | 4 | B.1.177.12 | 0.000607 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 4 | 4 | B.1.324 | 0.006421 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 4 | 4 | B.1.564 | 0.001704 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 4 | 4 | P.1.2 | 0.004624 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | A.27 | 0.004967 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | AE.8 | 0.001467 |
ORF1ab/nsp5A-B | 176 | D176del1 | Gac | -ac | 2 | 3 | All | 0 |
ORF1ab/nsp5A-B | 176 | D176del1 | GaC | -aA | 1 | 3 | All | 0 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp5A-B | 176 | D176Y | Gac | Tac | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | B.1.1.148 | 0.026316 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | B.1.1.263 | 0.004673 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | B.1.1.417 | 0.008108 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | B.1.1.523 | 0.004687 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | B.1.1.54 | 0.009063 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp5A-B | 176 | D176E | gaC | gaG | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 176 | D176E | gaC | gaA | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | B.1.177.54 | 0.001819 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | B.1.9.5 | 0.017045 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp5A-B | 176 | D176K | GaC | AaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 176 | D176E | gaC | gaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 176 | D176N | Gac | Aac | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 176 | D176H | Gac | Cac | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 176 | D176K | GaC | AaA | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | AW.1 | 0.006098 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.1.231 | 0.006192 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.258.4 | 0.006897 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.305 | 0.004301 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.332 | 0.006993 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.403 | 0.006536 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.453 | 0.006472 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.630 | 0.010471 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | B.1.8 | 0.003945 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp5A-B | 176 | D176G | gAc | gGc | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 176 | D176del2 | gAC | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 176 | D176V | gAc | gTc | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp5A-B | 176 | D176H | Gac | Cac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 176 | D176del1 | Gac | -ac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 176 | D176del1 | Gac | -ac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 176 | D176Y | Gac | Tac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 176 | D176N | Gac | Aac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 176 | D176H | Gac | Cac | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp5A-B | 176 | D176G | gAc | gGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 176 | D176E | gaC | gaA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 176 | D176Y | Gac | Tac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.201 | 0.02439 |
ORF1ab/nsp5A-B | 176 | D176N | Gac | Aac | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.244 | 0.015385 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp5A-B | 176 | D176Y | Gac | Tac | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.515 | 0.02 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp5A-B | 176 | D176A | gAc | gCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 176 | D176del2 | gAC | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 176 | D176V | gAc | gTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.12 | 0.008 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.310 | 0.047619 |
ORF1ab/nsp5A-B | 176 | D176E | gaC | gaA | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp5A-B | 176 | D176del1 | GaC | -aA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.36.34 | 0.021277 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.437 | 0.020833 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.442 | 0.035714 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.446 | 0.02 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.552 | 0.015152 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp5A-B | 176 | D176Y | Gac | Tac | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | C.9 | 0.030303 |
ORF1ab/nsp5A-B | 176 | D176E | gaC | gaG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp5A-B | 176 | D176del | GAC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp5A-B | 176 | D176D | gaC | gaT | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|