CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 161

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp5A-B	161	Y161Y	Y3424Y	syn	taC	taT	6312	6312	1	10535-10537
ORF1ab/nsp5A-B	161	Y161del	Y3424del	del	TAC	---	45	45	1	10535-10537
ORF1ab/nsp5A-B	161	Y161C	Y3424C	nonsyn	tAc	tGc	12	10	0.833333	10535-10537
ORF1ab/nsp5A-B	161	Y161C	Y3424C	nonsyn	tAC	tGT	12	2	0.166667	10535-10537
ORF1ab/nsp5A-B	161	Y161H	Y3424H	nonsyn	Tac	Cac	10	10	1	10535-10537
ORF1ab/nsp5A-B	161	Y161F	Y3424F	nonsyn	tAc	tTc	5	3	0.6	10535-10537
ORF1ab/nsp5A-B	161	Y161F	Y3424F	nonsyn	tAC	tTT	5	2	0.4	10535-10537
ORF1ab/nsp5A-B	161	Y161X	Y3424X	nonsyn	taC	taA	2	2	1	10535-10537
ORF1ab/nsp5A-B	161	Y161D	Y3424D	nonsyn	Tac	Gac	2	2	1	10535-10537
ORF1ab/nsp5A-B	161	Y161N	Y3424N	nonsyn	TaC	AaT	2	2	1	10535-10537
ORF1ab/nsp5A-B	161	Y161P	Y3424P	nonsyn	TAc	CCc	1	1	1	10535-10537
ORF1ab/nsp5A-B	161	Y161del1	Y3424del1	del	taC	ta-	1	1	1	10535-10537
ORF1ab/nsp5A-B	161	Y161L	Y3424L	nonsyn	TAc	CTc	1	1	1	10535-10537

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	6312	6312	All	0.001207
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1485	1485	B.1.1.7	0.001329
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1384	1384	AY.4	0.002154
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	619	619	B.1	0.00567
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	316	316	B.1.617.2	0.00119
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	233	233	B.1.526	0.005477
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	138	138	AY.103	0.000857
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	127	127	AY.20	0.004936
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	127	127	AY.43	0.000563
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	116	116	B.1.177.7	0.019123
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	111	111	B.1.177	0.001462
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	110	110	B.1.1.50	0.074678
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	98	98	B.1.2	0.000863
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	85	85	P.1	0.001339
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	80	80	B.1.160.7	0.16632
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	70	70	AY.102	0.001856
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	69	69	AY.100	0.003174
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	54	54	AY.9.1	0.004521
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	53	53	AY.25	0.000319
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	46	46	AY.44	0.00028
ORF1ab/nsp5A-B	161	Y161del	TAC	---	45	45	All	0.000009
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	36	36	AY.3	0.000358
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	36	36	AY.9.2	0.001322
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	33	33	B.1.1.214	0.00183
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	32	32	B.1.334	0.581818
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	31	31	B.1.621	0.002744
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	29	29	B.6	0.026388
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	27	27	B.1.1	0.00049
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	26	26	AY.92	0.007469
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	25	25	AY.74	0.002891
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	24	24	B.1.258	0.001597
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	24	24	B.1.427	0.001212
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	22	22	AY.42	0.000885
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	22	22	B.1.243	0.001531
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	18	18	AY.26	0.00051
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	18	18	AY.84	0.007874
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	17	17	P.1.17	0.00275
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	16	16	AY.5	0.00033
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	16	16	B.1.160	0.000499
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	14	14	AY.39	0.000346
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	14	14	R.1	0.00126
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	13	13	AY.114	0.003004
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	13	13	B.1.1.434	0.004531
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	13	13	B.1.405	0.160494
ORF1ab/nsp5A-B	161	Y161C	tAc	tGc	10	12	All	0.000002
ORF1ab/nsp5A-B	161	Y161C	tAC	tGT	2	12	All	0
ORF1ab/nsp5A-B	161	Y161del	TAC	---	12	12	AZ.2	0.009852
ORF1ab/nsp5A-B	161	Y161del	TAC	---	12	12	B.1.1.7	0.000011
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	11	11	AY.47	0.000342
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	11	11	AY.54	0.001049
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	11	11	AY.91	0.008035
ORF1ab/nsp5A-B	161	Y161H	Tac	Cac	10	10	All	0.000002
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	10	10	AY.46.6	0.000722
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	10	10	B.1.349	0.007148
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	10	10	B.1.396	0.007057
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	9	9	AY.120	0.000335
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	9	9	AY.98	0.000711
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	9	9	B.1.1.371	0.09375
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	8	8	AY.117	0.000676
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	8	8	AY.119	0.000282
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	8	8	B.1.1.284	0.000859
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	8	8	B.1.199	0.033058
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	7	7	AY.3.1	0.000597
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	7	7	B.1.1.28	0.002179
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	7	7	B.1.351	0.000208
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	7	7	B.1.634	0.023973
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	6	6	AY.23	0.000418
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	6	6	AY.29	0.000095
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	6	6	AY.6	0.000247
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	6	6	B.1.1.427	0.857143
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	6	6	B.1.525	0.000679
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	6	6	B.1.575	0.00182
ORF1ab/nsp5A-B	161	Y161F	tAc	tTc	3	5	All	0.000001
ORF1ab/nsp5A-B	161	Y161F	tAC	tTT	2	5	All	0
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	5	5	AY.121	0.000677
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	5	5	AY.61	0.000524
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	5	5	B.1.1.25	0.002843
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	5	5	B.1.1.318	0.001509
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	5	5	B.1.1.70	0.001705
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	5	5	B.1.36	0.00073
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	5	5	B.1.416	0.006345
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	5	5	B.1.517	0.002135
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	5	5	B.1.595	0.001305
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	5	5	P.1.14	0.000239
ORF1ab/nsp5A-B	161	Y161F	tAC	tTT	2	4		0.111111
ORF1ab/nsp5A-B	161	Y161C	tAc	tGc	2	4		0.111111
ORF1ab/nsp5A-B	161	Y161F	tAc	tTc	2	4		0.111111
ORF1ab/nsp5A-B	161	Y161C	tAC	tGT	2	4		0.111111
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	4	4	AY.105	0.002572
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	4	4	AY.38	0.001997
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	4	4	AY.86	0.00332
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	4	4	AY.98.1	0.000194
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	4	4	B.1.1.222	0.000816
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	4	4	B.1.1.306	0.001754
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	4	4	B.1.177.17	0.003284
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	4	4	B.1.258.17	0.000416
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	4	4	B.1.354	0.173913
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	4	4	B.1.399	0.007737
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	4	4	B.1.510	0.105263
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	4	4	Q.8	0.00066
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	AD.1	0.012346
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	AE.8	0.001467
ORF1ab/nsp5A-B	161	Y161del	TAC	---	3	3	AY.4	0.000005
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	AY.41	0.000882
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	AY.45	0.000365
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	AY.46.4	0.000494
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	AY.53	0.000863
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	AY.99.2	0.000276
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	B.1.1.311	0.001074
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	B.1.1.519	0.000119
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	B.1.110.3	0.002155
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	B.1.157	0.008955
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	B.1.221	0.000213
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	B.1.241	0.002435
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	B.1.429	0.000071
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	B.1.596	0.000261
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	B.1.617.1	0.000387
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	B.52	0.030303
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	P.1.10	0.000808
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	P.1.16	0.001122
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	3	3	P.2	0.00056
ORF1ab/nsp5A-B	161	Y161N	TaC	AaT	2	2		0.111111
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2		0.111111
ORF1ab/nsp5A-B	161	Y161del	TAC	---	2	2		0.111111
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	A.2.5	0.000998
ORF1ab/nsp5A-B	161	Y161X	taC	taA	2	2	All	0
ORF1ab/nsp5A-B	161	Y161D	Tac	Gac	2	2	All	0
ORF1ab/nsp5A-B	161	Y161N	TaC	AaT	2	2	All	0
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	AY.118	0.000125
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	AY.33	0.000134
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	AY.46.1	0.002053
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	AY.50	0.001599
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	AY.68	0.000547
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	AY.69	0.000373
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	AY.7.1	0.000225
ORF1ab/nsp5A-B	161	Y161del	TAC	---	2	2	AY.70	0.000417
ORF1ab/nsp5A-B	161	Y161del	TAC	---	2	2	AY.75	0.000112
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	AY.93	0.000546
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	AY.94	0.000885
ORF1ab/nsp5A-B	161	Y161C	tAc	tGc	2	2	B.1	0.000018
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	B.1.1.176	0.000879
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	B.1.1.348	0.001592
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	B.1.1.416	0.00181
ORF1ab/nsp5A-B	161	Y161H	Tac	Cac	2	2	B.1.1.7	0.000002
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	B.1.177.21	0.000153
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	B.1.177.81	0.000379
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	B.1.234	0.000264
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	B.1.320	0.002491
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	B.1.36.29	0.001035
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	B.1.637	0.000146
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	D.2	0.00015
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	P.1.15	0.000465
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	P.1.7	0.000639
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	2	2	P.3	0.00319
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	A.3	0.002096
ORF1ab/nsp5A-B	161	Y161del1	taC	ta-	1	1	All	0
ORF1ab/nsp5A-B	161	Y161L	TAc	CTc	1	1	All	0
ORF1ab/nsp5A-B	161	Y161P	TAc	CCc	1	1	All	0
ORF1ab/nsp5A-B	161	Y161C	tAc	tGc	1	1	AY.103	0.000006
ORF1ab/nsp5A-B	161	Y161H	Tac	Cac	1	1	AY.103	0.000006
ORF1ab/nsp5A-B	161	Y161del	TAC	---	1	1	AY.108	0.001103
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.110	0.000113
ORF1ab/nsp5A-B	161	Y161H	Tac	Cac	1	1	AY.13	0.000161
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.13	0.000161
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.16	0.00038
ORF1ab/nsp5A-B	161	Y161del	TAC	---	1	1	AY.25	0.000006
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.27	0.000065
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.34	0.000097
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.36	0.000148
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.39.1	0.00004
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.4.2	0.000022
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.4.3	0.000842
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.4.5	0.000107
ORF1ab/nsp5A-B	161	Y161D	Tac	Gac	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	161	Y161H	Tac	Cac	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	161	Y161C	tAc	tGc	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	161	Y161del	TAC	---	1	1	AY.45	0.000122
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.46	0.000104
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.46.3	0.000934
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.46.5	0.000198
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.48	0.000465
ORF1ab/nsp5A-B	161	Y161C	tAc	tGc	1	1	AY.5	0.000021
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.52	0.000814
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.55	0.000917
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.57	0.000656
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.59	0.00053
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.67	0.000464
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.71	0.000475
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.75	0.000056
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.75.1	0.00018
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.80	0.001129
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.95	0.000761
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	AY.99	0.001049
ORF1ab/nsp5A-B	161	Y161del	TAC	---	1	1	AY.99	0.001049
ORF1ab/nsp5A-B	161	Y161del	TAC	---	1	1	AY.99.1	0.001553
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B	0.000128
ORF1ab/nsp5A-B	161	Y161H	Tac	Cac	1	1	B.1	0.000009
ORF1ab/nsp5A-B	161	Y161F	tAc	tTc	1	1	B.1	0.000009
ORF1ab/nsp5A-B	161	Y161del	TAC	---	1	1	B.1	0.000009
ORF1ab/nsp5A-B	161	Y161X	taC	taA	1	1	B.1	0.000009
ORF1ab/nsp5A-B	161	Y161del	TAC	---	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	161	Y161H	Tac	Cac	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.1.189	0.001513
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.1.207	0.001182
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.1.216	0.00089
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.1.231	0.003096
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.1.263	0.001558
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.1.291	0.000742
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.1.356	0.008547
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.1.362	0.005618
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.1.37	0.000193
ORF1ab/nsp5A-B	161	Y161C	tAc	tGc	1	1	B.1.1.39	0.00051
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.1.409	0.002833
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.1.464	0.001473
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.1.466	0.008696
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.1.51	0.001718
ORF1ab/nsp5A-B	161	Y161C	tAc	tGc	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	161	Y161H	Tac	Cac	1	1	B.1.139	0.000733
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.169	0.014925
ORF1ab/nsp5A-B	161	Y161del	TAC	---	1	1	B.1.177	0.000013
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.177.10	0.000878
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.177.15	0.000631
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.177.23	0.003236
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.177.35	0.000691
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.177.4	0.000211
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.177.43	0.001477
ORF1ab/nsp5A-B	161	Y161D	Tac	Gac	1	1	B.1.177.81	0.000189
ORF1ab/nsp5A-B	161	Y161X	taC	taA	1	1	B.1.2	0.000009
ORF1ab/nsp5A-B	161	Y161P	TAc	CCc	1	1	B.1.2	0.000009
ORF1ab/nsp5A-B	161	Y161H	Tac	Cac	1	1	B.1.2	0.000009
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.212	0.016667
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.214.2	0.0006
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.260	0.003344
ORF1ab/nsp5A-B	161	Y161del1	taC	ta-	1	1	B.1.351	0.00003
ORF1ab/nsp5A-B	161	Y161del	TAC	---	1	1	B.1.36	0.000146
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.36.17	0.000494
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.36.18	0.00042
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.36.22	0.001208
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.36.31	0.001751
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.36.36	0.000602
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.362.2	0.004717
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.398	0.002976
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.417	0.028571
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.425	0.002994
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.438.1	0.000107
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.466	0.023256
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.490	0.1
ORF1ab/nsp5A-B	161	Y161del	TAC	---	1	1	B.1.526	0.000024
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.527	0.003704
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.561	0.000397
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.565	0.00081
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.566	0.019231
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.577	0.000687
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.600	0.005848
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.605	0.005952
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.609	0.000479
ORF1ab/nsp5A-B	161	Y161L	TAc	CTc	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	161	Y161del	TAC	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.619	0.000871
ORF1ab/nsp5A-B	161	Y161C	tAc	tGc	1	1	B.1.621	0.000089
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.623	0.000536
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	B.1.628	0.000352
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	C.35	0.000774
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	C.36.3	0.000567
ORF1ab/nsp5A-B	161	Y161H	Tac	Cac	1	1	D.2	0.000075
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	N.3	0.005814
ORF1ab/nsp5A-B	161	Y161del	TAC	---	1	1	N.4	0.004255
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	P.1.12	0.000484
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	Q.1	0.000126
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	Q.3	0.000145
ORF1ab/nsp5A-B	161	Y161Y	taC	taT	1	1	Q.4	0.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.