CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 140 | F140F | F3403F | syn | ttC | ttT | 1505 | 1505 | 1 | 10472-10474 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1505 | 1505 | All | 0.000288 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 585 | 585 | B.1.404 | 0.761719 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 148 | 148 | AY.39 | 0.003657 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 119 | 119 | B.1.36.17 | 0.058794 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 98 | 98 | B.1.1.7 | 0.000088 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 62 | 62 | AY.25 | 0.000373 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 54 | 54 | B.1 | 0.000495 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 50 | 50 | AY.26 | 0.001416 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 50 | 50 | B.1.1.368 | 0.154321 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 38 | 38 | B.1.351 | 0.00113 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 31 | 31 | B.1.2 | 0.000273 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 24 | 24 | AY.44 | 0.000146 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 20 | 20 | P.1 | 0.000315 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 18 | 18 | B.1.617.2 | 0.000068 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 14 | 14 | AY.29 | 0.000221 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 13 | 13 | AY.102 | 0.000345 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 11 | 11 | AY.85 | 0.004699 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 11 | 11 | B.1.177 | 0.000145 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 3 | 3 | B | 0.000383 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 3 | 3 | B.1.1.361 | 0.136364 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 3 | 3 | B.1.177.53 | 0.007177 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 2 | 2 | B.1.146 | 0.008475 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 2 | 2 | B.1.324 | 0.00321 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.36.2 | 0.010753 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | C.6 | 0.037037 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp5A-B | 140 | F140F | ttC | ttT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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