CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 132 | P132P | P3395P | syn | ccC | ccT | 9367 | 9293 | 0.9921 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132P | P3395P | syn | ccC | ccA | 9367 | 72 | 0.00768656 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132P | P3395P | syn | ccC | ccG | 9367 | 2 | 0.000213516 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132L | P3395L | nonsyn | cCc | cTc | 6122 | 6117 | 0.999183 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132L | P3395L | nonsyn | cCC | cTT | 6122 | 5 | 0.000816727 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132S | P3395S | nonsyn | Ccc | Tcc | 5645 | 5631 | 0.99752 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132S | P3395S | nonsyn | CcC | TcT | 5645 | 13 | 0.00230292 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132S | P3395S | nonsyn | CcC | TcA | 5645 | 1 | 0.000177148 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132H | P3395H | nonsyn | cCc | cAc | 405 | 404 | 0.997531 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132H | P3395H | nonsyn | cCC | cAT | 405 | 1 | 0.00246914 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132del | P3395del | del | CCC | --- | 77 | 77 | 1 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132T | P3395T | nonsyn | Ccc | Acc | 54 | 54 | 1 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132A | P3395A | nonsyn | Ccc | Gcc | 40 | 40 | 1 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132del1 | P3395del1 | del | Ccc | -cc | 4 | 3 | 0.75 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132del1 | P3395del1 | del | CcC | Gc- | 4 | 1 | 0.25 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132R | P3395R | nonsyn | cCc | cGc | 1 | 1 | 1 | 10448-10450 |
ORF1ab/nsp5A-B | 132 | P132Q | P3395Q | nonsyn | cCC | cAA | 1 | 1 | 1 | 10448-10450 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 9293 | 9367 | All | 0.001777 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 72 | 9367 | All | 0.000014 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccG | 2 | 9367 | All | 0 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 6117 | 6122 | All | 0.00117 |
ORF1ab/nsp5A-B | 132 | P132L | cCC | cTT | 5 | 6122 | All | 0.000001 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 5631 | 5645 | All | 0.001077 |
ORF1ab/nsp5A-B | 132 | P132S | CcC | TcT | 13 | 5645 | All | 0.000002 |
ORF1ab/nsp5A-B | 132 | P132S | CcC | TcA | 1 | 5645 | All | 0 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1790 | 1791 | AY.9.2 | 0.065746 |
ORF1ab/nsp5A-B | 132 | P132L | cCC | cTT | 1 | 1791 | AY.9.2 | 0.000037 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1468 | 1468 | B.1.526 | 0.034505 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 875 | 875 | B.1.568 | 0.972222 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 851 | 860 | B.1.1.7 | 0.000762 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 9 | 860 | B.1.1.7 | 0.000008 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 823 | 829 | AY.4 | 0.001281 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 6 | 829 | AY.4 | 0.000009 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 670 | 671 | AY.4 | 0.001043 |
ORF1ab/nsp5A-B | 132 | P132S | CcC | TcT | 1 | 671 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 650 | 650 | AP.1 | 0.975976 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 642 | 642 | B.1.243 | 0.044673 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 623 | 623 | B.1.1.7 | 0.000558 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 592 | 593 | B.1.177 | 0.007795 |
ORF1ab/nsp5A-B | 132 | P132S | CcC | TcT | 1 | 593 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 539 | 539 | B.1.617.2 | 0.00203 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 523 | 532 | B.1.617.2 | 0.001969 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 9 | 532 | B.1.617.2 | 0.000034 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 522 | 526 | AY.25 | 0.00314 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 4 | 526 | AY.25 | 0.000024 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 523 | 523 | B.1.582 | 0.256624 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 468 | 468 | B.1.1.7 | 0.000419 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 451 | 451 | AY.4 | 0.000702 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 417 | 419 | B.1.617.2 | 0.00157 |
ORF1ab/nsp5A-B | 132 | P132S | CcC | TcA | 1 | 419 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 132 | P132S | CcC | TcT | 1 | 419 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 404 | 405 | All | 0.000077 |
ORF1ab/nsp5A-B | 132 | P132H | cCC | cAT | 1 | 405 | All | 0 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 401 | 402 | AY.43 | 0.001777 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 1 | 402 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 283 | 283 | AY.9 | 0.019129 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 281 | 281 | B.1.561 | 0.111552 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 275 | 275 | AY.43 | 0.001218 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 251 | 251 | P.1 | 0.003954 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 242 | 242 | B.1.499 | 0.254202 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 213 | 215 | B.1 | 0.001951 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 2 | 215 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 203 | 204 | B.1.1 | 0.003683 |
ORF1ab/nsp5A-B | 132 | P132S | CcC | TcT | 1 | 204 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 187 | 187 | B.1.177.81 | 0.035403 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 141 | 141 | AY.29 | 0.002224 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 135 | 137 | B.1.2 | 0.001189 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 2 | 137 | B.1.2 | 0.000018 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 123 | 124 | AY.44 | 0.000749 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 1 | 124 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 123 | 123 | AY.29 | 0.00194 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 113 | 113 | R.1 | 0.010171 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 110 | 110 | AY.43 | 0.000487 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 106 | 106 | AY.103 | 0.000658 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 104 | 104 | B.1.2 | 0.000916 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 103 | 103 | B.1.2 | 0.000907 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 93 | 101 | AY.102 | 0.002466 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 8 | 101 | AY.102 | 0.000212 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 98 | 99 | B.1.258 | 0.006522 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 1 | 99 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 98 | 98 | AY.102 | 0.002598 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 97 | 97 | AS.1 | 0.92381 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 97 | 97 | AY.74 | 0.011218 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 96 | 96 | AY.32 | 0.051118 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 93 | 93 | B.1 | 0.000852 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 89 | 89 | AY.103 | 0.000553 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 89 | 89 | AY.44 | 0.000542 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 89 | 89 | B.1.1.519 | 0.003534 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 84 | 85 | B.1 | 0.000769 |
ORF1ab/nsp5A-B | 132 | P132L | cCC | cTT | 1 | 85 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 82 | 82 | AY.44 | 0.000499 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 79 | 79 | AY.4 | 0.000123 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 77 | 77 | All | 0.000015 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 77 | 77 | AY.25 | 0.000463 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 77 | 77 | AY.3 | 0.000766 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 76 | 76 | B.1.1.221 | 0.767677 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 70 | 70 | AY.25 | 0.000421 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 69 | 70 | B.1.1 | 0.001252 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 1 | 70 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 69 | 69 | AY.47 | 0.002146 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 68 | 69 | B.1.429 | 0.0016 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 1 | 69 | B.1.429 | 0.000024 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 68 | 68 | B.1.1.141 | 0.136821 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 67 | 67 | B.1.466.1 | 0.482014 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 61 | 61 | B.1.1.39 | 0.031091 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 60 | 60 | AY.103 | 0.000373 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 60 | 60 | B.1.239 | 0.07326 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 60 | 60 | B.1.610 | 0.212766 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 56 | 56 | B.1.177 | 0.000737 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 55 | 55 | AY.39 | 0.001359 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 54 | 54 | All | 0.00001 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 53 | 53 | B.1.429 | 0.001247 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 52 | 52 | B.1.351 | 0.001546 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 51 | 51 | AY.3 | 0.000507 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 51 | 51 | R.1 | 0.00459 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 46 | 46 | AY.5 | 0.00095 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 43 | 43 | AY.26 | 0.001217 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 42 | 43 | B.1.1 | 0.000762 |
ORF1ab/nsp5A-B | 132 | P132L | cCC | cTT | 1 | 43 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 42 | 42 | AY.5 | 0.000867 |
ORF1ab/nsp5A-B | 132 | P132A | Ccc | Gcc | 40 | 40 | All | 0.000008 |
ORF1ab/nsp5A-B | 132 | P132A | Ccc | Gcc | 35 | 35 | AY.6 | 0.001439 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 35 | 35 | AZ.2 | 0.028736 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 34 | 34 | B.1.617.2 | 0.000128 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 31 | 33 | AY.39 | 0.000766 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 2 | 33 | AY.39 | 0.000049 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 33 | 33 | AY.42 | 0.001328 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 33 | 33 | B.1.177 | 0.000435 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 32 | 32 | AY.121 | 0.00433 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 32 | 32 | AY.98.1 | 0.00155 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 31 | 31 | AY.113 | 0.004414 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 31 | 31 | AY.26 | 0.000878 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 29 | 29 | AY.118 | 0.001817 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 28 | 29 | AY.23 | 0.001953 |
ORF1ab/nsp5A-B | 132 | P132S | CcC | TcT | 1 | 29 | AY.23 | 0.00007 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 29 | 29 | N.10 | 0.852941 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 29 | 29 | P.1 | 0.000457 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 27 | 27 | B.1.1.70 | 0.009209 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 25 | 26 | AY.47 | 0.000778 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 1 | 26 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 25 | 25 | AY.47 | 0.000778 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 25 | 25 | B.1.1.316 | 0.023127 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 25 | 25 | B.1.497 | 0.007869 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 25 | 25 | L.1 | 0.047619 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 24 | 24 | AY.100 | 0.001104 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 24 | 24 | AY.29 | 0.000379 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 24 | 24 | AY.39.1 | 0.000951 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 24 | 24 | C.30.1 | 0.161074 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 23 | 23 | AY.98 | 0.001817 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 23 | 23 | B.1.1.1 | 0.007514 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 22 | 22 | AY.100 | 0.001012 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 22 | 22 | AY.121 | 0.002977 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 22 | 22 | B.1.243 | 0.001531 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 21 | 21 | AY.119 | 0.000741 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 21 | 21 | AY.36 | 0.003112 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 21 | 21 | B.1.160 | 0.000655 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 20 | 20 | B.1.1.28 | 0.006225 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 19 | 19 | A.28 | 0.050265 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 19 | 19 | AY.100 | 0.000874 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 19 | 19 | AY.20 | 0.000738 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 19 | 19 | AY.3.1 | 0.00162 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 19 | 19 | AY.5 | 0.000392 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 19 | 19 | B.1.36.29 | 0.009829 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 18 | 18 | AY.3 | 0.000179 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 18 | 18 | AY.46.4 | 0.002961 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 18 | 18 | B.1.177.17 | 0.014778 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 18 | 18 | P.1 | 0.000284 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 17 | 17 | B.1.1.317 | 0.006999 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 17 | 17 | B.1.427 | 0.000858 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 16 | 16 | AY.20 | 0.000622 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 16 | 16 | AY.66 | 0.017112 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 16 | 16 | B.1.596 | 0.001394 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 16 | 16 | B.1.637 | 0.001169 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 16 | 16 | C.37 | 0.001857 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 15 | 15 | B.1.1.371 | 0.15625 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 14 | 14 | AY.106 | 0.004689 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 14 | 14 | AY.117 | 0.001183 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 14 | 14 | AY.27 | 0.000906 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 14 | 14 | AY.4.2 | 0.000304 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 14 | 14 | B.1.1.284 | 0.001504 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 14 | 14 | B.1.221 | 0.000994 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 14 | 14 | B.1.36 | 0.002043 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 14 | 14 | B.1.36 | 0.002043 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 13 | 14 | B.1.526 | 0.000306 |
ORF1ab/nsp5A-B | 132 | P132S | CcC | TcT | 1 | 14 | B.1.526 | 0.000024 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 14 | 14 | P.1.15 | 0.003253 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 13 | 13 | AY.118 | 0.000814 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 13 | 13 | AY.40 | 0.012536 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 13 | 13 | AY.45 | 0.001582 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 11 | 13 | B.1.160 | 0.000343 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 2 | 13 | B.1.160 | 0.000062 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 13 | 13 | B.1.177.21 | 0.000994 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 13 | 13 | B.1.258.17 | 0.001352 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 11 | 12 | A | 0.004257 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 1 | 12 | A | 0.000387 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 12 | 12 | AY.83 | 0.02069 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 12 | 12 | B.1.1.222 | 0.002448 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 12 | 12 | B.1.177.4 | 0.002533 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 12 | 12 | B.1.612 | 0.03183 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 11 | 11 | AY.120 | 0.000409 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 11 | 11 | AY.14 | 0.000968 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 11 | 11 | AY.4.2.1 | 0.001639 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 11 | 11 | AY.9.1 | 0.000921 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 11 | 11 | B.1.177.60 | 0.002403 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 11 | 11 | Q.1 | 0.00139 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 9 | 10 | AY.117 | 0.000761 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccG | 1 | 10 | AY.117 | 0.000085 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 10 | 10 | AY.4.2.1 | 0.00149 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 10 | 10 | B.1.1.263 | 0.015576 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 10 | 10 | B.1.221 | 0.00071 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 10 | 10 | B.1.609 | 0.004794 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 9 | 9 | AY.104 | 0.017857 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 9 | 9 | B.1.177.35 | 0.00622 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 9 | 9 | B.1.234 | 0.001187 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 9 | 9 | B.1.36.29 | 0.004656 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 9 | 9 | B.1.551 | 0.011613 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 9 | 9 | B.1.617.1 | 0.001161 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 7 | 9 | B.1.621 | 0.00062 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 2 | 9 | B.1.621 | 0.000177 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 8 | 8 | AY.48 | 0.003721 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 8 | 8 | B.1.258.17 | 0.000832 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 7 | 8 | B.1.596 | 0.00061 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 1 | 8 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 5 | 8 | P.1.14 | 0.000239 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 8 | P.1.14 | 0.000143 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 7 | 7 | AY.27 | 0.000453 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 7 | 7 | AY.70 | 0.00146 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 7 | 7 | AY.95 | 0.005327 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 6 | 7 | B | 0.000767 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 1 | 7 | B | 0.000128 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 7 | 7 | B.1.1.216 | 0.006233 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 7 | 7 | B.1.1.225 | 0.05036 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 7 | 7 | B.1.1.25 | 0.00398 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 7 | 7 | B.1.1.298 | 0.006034 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 7 | 7 | B.1.1.63 | 0.002701 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 7 | 7 | B.1.177.32 | 0.009447 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 7 | 7 | B.1.177.60 | 0.001529 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 5 | 7 | B.1.240 | 0.001078 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 7 | B.1.240 | 0.000431 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 7 | 7 | B.1.451 | 0.057377 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 7 | 7 | B.1.93 | 0.006536 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 6 | 6 | A.21 | 0.01662 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 6 | 6 | AG.1 | 0.4 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 6 | 6 | AY.110 | 0.000676 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 6 | 6 | AY.111 | 0.001099 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 6 | 6 | AY.9.1 | 0.000502 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 6 | 6 | AY.93 | 0.001638 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 6 | 6 | B.1.1.176 | 0.002636 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 6 | 6 | B.1.1.189 | 0.009077 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 6 | 6 | B.1.1.189 | 0.009077 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 6 | 6 | B.1.1.25 | 0.003411 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 5 | 6 | B.1.1.28 | 0.001556 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccG | 1 | 6 | B.1.1.28 | 0.000311 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 6 | 6 | B.1.1.33 | 0.002525 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 6 | 6 | B.1.232 | 0.003224 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 6 | 6 | B.1.369 | 0.001711 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 6 | 6 | B.1.565 | 0.004862 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 6 | 6 | Q.3 | 0.00087 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 5 | AY.24 | 0.001724 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 1 | 5 | AY.24 | 0.000431 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 5 | 5 | AY.5.1 | 0.018797 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 5 | 5 | AY.5.3 | 0.001687 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 5 | 5 | B.1.1.192 | 0.011547 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 5 | 5 | B.1.1.368 | 0.015432 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 5 | 5 | B.1.1.50 | 0.003394 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 5 | 5 | B.1.111 | 0.005875 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 5 | 5 | B.1.177.63 | 0.013514 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 5 | 5 | B.1.177.8 | 0.003762 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 5 | 5 | B.1.319 | 0.015244 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 5 | 5 | B.1.36.17 | 0.00247 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 5 | 5 | B.1.36.8 | 0.005 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp5A-B | 132 | P132S | CcC | TcT | 5 | 5 | B.1.499 | 0.005252 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 4 | 5 | C.37 | 0.000464 |
ORF1ab/nsp5A-B | 132 | P132L | cCC | cTT | 1 | 5 | C.37 | 0.000116 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 5 | 5 | L.3 | 0.01773 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp5A-B | 132 | P132del1 | Ccc | -cc | 3 | 4 | All | 0.000001 |
ORF1ab/nsp5A-B | 132 | P132del1 | CcC | Gc- | 1 | 4 | All | 0 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 4 | 4 | AY.35 | 0.000932 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 4 | 4 | AY.46.3 | 0.003735 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | AY.64 | 0.002381 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp5A-B | 132 | P132H | cCC | cAT | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | B.1.1.128 | 0.028369 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 4 | 4 | B.1.1.337 | 0.014388 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 4 | 4 | B.1.1.404 | 0.063492 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp5A-B | 132 | P132A | Ccc | Gcc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | B.1.214.1 | 0.08 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 4 | 4 | B.1.239 | 0.004884 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 4 | 4 | B.1.241 | 0.003247 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | B.1.36.31 | 0.007005 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 4 | 4 | B.1.396 | 0.002823 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | B.1.558 | 0.018265 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | B.1.565 | 0.003241 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | B.1.588 | 0.00364 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 4 | 4 | B.1.617.3 | 0.01194 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 3 | 3 | AT.1 | 0.015385 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | AY.19 | 0.003421 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | AY.2 | 0.001068 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 3 | AY.27 | 0.000129 |
ORF1ab/nsp5A-B | 132 | P132L | cCC | cTT | 1 | 3 | AY.27 | 0.000065 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | B | 0.000383 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | B.1.1.240 | 0.014085 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | B.1.1.420 | 0.003018 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | B.1.128 | 0.001906 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | B.1.177.17 | 0.002463 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | B.1.177.79 | 0.007026 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | B.1.344 | 0.02459 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | B.1.356 | 0.005181 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | B.1.36.22 | 0.003623 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | B.1.36.28 | 0.017241 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | B.1.366 | 0.014634 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | B.1.378 | 0.020548 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | B.1.499.1 | 0.333333 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | B.1.538 | 0.024194 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | B.1.551 | 0.003871 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | B.1.560 | 0.013889 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | B.1.620 | 0.002838 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 3 | 3 | B.1.626 | 0.017143 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 3 | 3 | P.6 | 0.009434 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 2 | AY.30 | 0.000396 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 1 | 2 | AY.30 | 0.000396 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 1 | 2 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 2 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 132 | P132del1 | Ccc | -cc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | B.1.1.274 | 0.010101 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | B.1.1.298 | 0.001724 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | B.1.1.374 | 0.004751 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 2 | 2 | B.1.1.51 | 0.003436 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | B.1.1.54 | 0.006042 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | B.1.1.74 | 0.008621 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.131 | 0.017544 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.177.19 | 0.002861 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.177.42 | 0.001789 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 2 | 2 | B.1.284 | 0.026316 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | B.1.460 | 0.035714 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.498 | 0.040816 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | B.1.511 | 0.068966 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.573 | 0.012195 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | B.1.604 | 0.034483 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | B.1.635 | 0.035088 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | B.12 | 0.012821 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 1 | 2 | B.6 | 0.00091 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 2 | B.6 | 0.00091 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | C.32 | 0.046512 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | L.1 | 0.00381 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 2 | N.5 | 0.001767 |
ORF1ab/nsp5A-B | 132 | P132S | CcC | TcT | 1 | 2 | N.5 | 0.001767 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp5A-B | 132 | P132Q | cCC | cAA | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 132 | P132R | cCc | cGc | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp5A-B | 132 | P132del1 | Ccc | -cc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp5A-B | 132 | P132A | Ccc | Gcc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp5A-B | 132 | P132del1 | CcC | Gc- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.5.1 | 0.003759 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 132 | P132Q | cCC | cAA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 132 | P132R | cCc | cGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.118 | 0.010204 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.1.203 | 0.016949 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.226 | 0.005814 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.272 | 0.005208 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.1.275 | 0.011236 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.160.24 | 0.004425 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.167 | 0.007812 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.177.88 | 0.012346 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.180 | 0.05 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.258.6 | 0.019608 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.344 | 0.008197 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.357 | 0.009524 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.393 | 0.028571 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.405 | 0.012346 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.493 | 0.025641 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.516 | 0.001957 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp5A-B | 132 | P132S | CcC | TcT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp5A-B | 132 | P132T | Ccc | Acc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccA | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | B.6.8 | 0.008264 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | C.13 | 0.025641 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp5A-B | 132 | P132H | cCc | cAc | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 132 | P132del | CCC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp5A-B | 132 | P132L | cCc | cTc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp5A-B | 132 | P132P | ccC | ccT | 1 | 1 | P.1.5 | 0.076923 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp5A-B | 132 | P132S | Ccc | Tcc | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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