CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 131

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B131R131RR3394RsynagGagA115010560.91826110445-10447
ORF1ab/nsp5A-B131R131RR3394RsynAggCgg1150940.081739110445-10447
ORF1ab/nsp5A-B131R131delR3394deldelAGG---7575110445-10447
ORF1ab/nsp5A-B131R131MR3394MnonsynaGgaTg2424110445-10447
ORF1ab/nsp5A-B131R131SR3394SnonsynagGagT24180.7510445-10447
ORF1ab/nsp5A-B131R131SR3394SnonsynagGagC2460.2510445-10447
ORF1ab/nsp5A-B131R131WR3394WnonsynAggTgg1717110445-10447
ORF1ab/nsp5A-B131R131GR3394GnonsynAggGgg1212110445-10447
ORF1ab/nsp5A-B131R131KR3394KnonsynaGgaAg66110445-10447
ORF1ab/nsp5A-B131R131del1R3394del1delaGga-g540.810445-10447
ORF1ab/nsp5A-B131R131del1R3394del1delAgg-gg510.210445-10447
ORF1ab/nsp5A-B131R131TR3394TnonsynaGgaCg33110445-10447
ORF1ab/nsp5A-B131R131IR3394InonsynaGGaTA320.66666710445-10447
ORF1ab/nsp5A-B131R131IR3394InonsynaGGaTT310.33333310445-10447
ORF1ab/nsp5A-B131R131LR3394LnonsynAGgTTg22110445-10447
ORF1ab/nsp5A-B131R131VR3394VnonsynAGgGTg22110445-10447
ORF1ab/nsp5A-B131R131QR3394QnonsynAGGCAA210.510445-10447
ORF1ab/nsp5A-B131R131QR3394QnonsynAGgCAg210.510445-10447
ORF1ab/nsp5A-B131R131CR3394CnonsynAgGTgT11110445-10447
ORF1ab/nsp5A-B131R131del2R3394del2delaGGa--11110445-10447

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B131R131RagGagA10561150All0.000202
ORF1ab/nsp5A-B131R131RAggCgg941150All0.000018
ORF1ab/nsp5A-B131R131RagGagA283284AY.1030.001757
ORF1ab/nsp5A-B131R131RAggCgg1284AY.1030.000006
ORF1ab/nsp5A-B131R131RagGagA170170B.1.1.2220.03468
ORF1ab/nsp5A-B131R131RagGagA8990AY.40.000139
ORF1ab/nsp5A-B131R131RAggCgg190AY.40.000002
ORF1ab/nsp5A-B131R131RagGagA8789B.1.1.70.000078
ORF1ab/nsp5A-B131R131RAggCgg289B.1.1.70.000002
ORF1ab/nsp5A-B131R131delAGG---7575All0.000014
ORF1ab/nsp5A-B131R131RagGagA6364B.1.617.20.000237
ORF1ab/nsp5A-B131R131RAggCgg164B.1.617.20.000004
ORF1ab/nsp5A-B131R131RagGagA5353A.150.84127
ORF1ab/nsp5A-B131R131RagGagA4242P.1.140.002008
ORF1ab/nsp5A-B131R131delAGG---3636AZ.20.029557
ORF1ab/nsp5A-B131R131RAggCgg2930B.1.2430.002018
ORF1ab/nsp5A-B131R131RagGagA130B.1.2430.00007
ORF1ab/nsp5A-B131R131RAggCgg2529AY.290.000394
ORF1ab/nsp5A-B131R131RagGagA429AY.290.000063
ORF1ab/nsp5A-B131R131RagGagA2929AY.50.000599
ORF1ab/nsp5A-B131R131MaGgaTg2424All0.000005
ORF1ab/nsp5A-B131R131SagGagT1824All0.000003
ORF1ab/nsp5A-B131R131SagGagC624All0.000001
ORF1ab/nsp5A-B131R131RagGagA2021B.1.20.000176
ORF1ab/nsp5A-B131R131RAggCgg121B.1.20.000009
ORF1ab/nsp5A-B131R131RagGagA1020AY.440.000061
ORF1ab/nsp5A-B131R131RAggCgg1020AY.440.000061
ORF1ab/nsp5A-B131R131RagGagA2020B.1.6090.009588
ORF1ab/nsp5A-B131R131WAggTgg1717All0.000003
ORF1ab/nsp5A-B131R131RagGagA1617AY.430.000071
ORF1ab/nsp5A-B131R131RAggCgg117AY.430.000004
ORF1ab/nsp5A-B131R131delAGG---1515B.1.1.70.000013
ORF1ab/nsp5A-B131R131RagGagA1313B.10.000119
ORF1ab/nsp5A-B131R131WAggTgg1313B.10.000119
ORF1ab/nsp5A-B131R131RagGagA1113B.1.10.0002
ORF1ab/nsp5A-B131R131RAggCgg213B.1.10.000036
ORF1ab/nsp5A-B131R131GAggGgg1212All0.000002
ORF1ab/nsp5A-B131R131RagGagA811B.1.1770.000105
ORF1ab/nsp5A-B131R131RAggCgg311B.1.1770.00004
ORF1ab/nsp5A-B131R131RagGagA1111B.1.2400.002371
ORF1ab/nsp5A-B131R131RagGagA1010AY.250.00006
ORF1ab/nsp5A-B131R131RAggCgg99AY.9.10.000754
ORF1ab/nsp5A-B131R131RagGagA88AY.260.000226
ORF1ab/nsp5A-B131R131GAggGgg77B.10.000064
ORF1ab/nsp5A-B131R131KaGgaAg66All0.000001
ORF1ab/nsp5A-B131R131MaGgaTg66B.10.000055
ORF1ab/nsp5A-B131R131RagGagA66B.1.1.5190.000238
ORF1ab/nsp5A-B131R131del1aGga-g45All0.000001
ORF1ab/nsp5A-B131R131del1Agg-gg15All0
ORF1ab/nsp5A-B131R131RagGagA55B.1.5960.000436
ORF1ab/nsp5A-B131R131SagGagT45D.20.0003
ORF1ab/nsp5A-B131R131SagGagC15D.20.000075
ORF1ab/nsp5A-B131R131delAGG---440.222222
ORF1ab/nsp5A-B131R131RagGagA44AY.1000.000184
ORF1ab/nsp5A-B131R131delAGG---44AY.40.000006
ORF1ab/nsp5A-B131R131RagGagA44AY.750.000224
ORF1ab/nsp5A-B131R131RagGagA44AY.860.00332
ORF1ab/nsp5A-B131R131SagGagT34B.10.000027
ORF1ab/nsp5A-B131R131SagGagC14B.10.000009
ORF1ab/nsp5A-B131R131RagGagA44B.1.1.2690.005413
ORF1ab/nsp5A-B131R131RagGagA44P.10.000063
ORF1ab/nsp5A-B131R131TaGgaCg33All0.000001
ORF1ab/nsp5A-B131R131IaGGaTA23All0
ORF1ab/nsp5A-B131R131IaGGaTT13All0
ORF1ab/nsp5A-B131R131RagGagA33AY.1020.00008
ORF1ab/nsp5A-B131R131RAggCgg33AY.1140.000693
ORF1ab/nsp5A-B131R131RagGagA23AY.200.000078
ORF1ab/nsp5A-B131R131RAggCgg13AY.200.000039
ORF1ab/nsp5A-B131R131RagGagA33AY.270.000194
ORF1ab/nsp5A-B131R131RagGagA33AY.3.10.000256
ORF1ab/nsp5A-B131R131RagGagA33AY.580.002722
ORF1ab/nsp5A-B131R131RagGagA33AY.60.000123
ORF1ab/nsp5A-B131R131SagGagC23B.1.1.70.000002
ORF1ab/nsp5A-B131R131SagGagT13B.1.1.70.000001
ORF1ab/nsp5A-B131R131MaGgaTg33B.1.20.000026
ORF1ab/nsp5A-B131R131RagGagA33C.370.000348
ORF1ab/nsp5A-B131R131IaGGaTA220.111111
ORF1ab/nsp5A-B131R131LAGgTTg22All0
ORF1ab/nsp5A-B131R131VAGgGTg22All0
ORF1ab/nsp5A-B131R131QAGgCAg12All0
ORF1ab/nsp5A-B131R131QAGGCAA12All0
ORF1ab/nsp5A-B131R131RagGagA22AY.1170.000169
ORF1ab/nsp5A-B131R131RagGagA22AY.1200.000074
ORF1ab/nsp5A-B131R131RagGagA22AY.140.000176
ORF1ab/nsp5A-B131R131RagGagA22AY.230.000139
ORF1ab/nsp5A-B131R131RAggCgg12AY.30.00001
ORF1ab/nsp5A-B131R131RagGagA12AY.30.00001
ORF1ab/nsp5A-B131R131RAggCgg12AY.39.10.00004
ORF1ab/nsp5A-B131R131RagGagA12AY.39.10.00004
ORF1ab/nsp5A-B131R131SagGagT12AY.40.000002
ORF1ab/nsp5A-B131R131SagGagC12AY.40.000002
ORF1ab/nsp5A-B131R131delAGG---22AY.700.000417
ORF1ab/nsp5A-B131R131VAGgGTg22B.10.000018
ORF1ab/nsp5A-B131R131LAGgTTg22B.10.000018
ORF1ab/nsp5A-B131R131delAGG---22B.1.1.510.003436
ORF1ab/nsp5A-B131R131MaGgaTg22B.1.1.70.000002
ORF1ab/nsp5A-B131R131MaGgaTg22B.1.1770.000026
ORF1ab/nsp5A-B131R131RagGagA22B.1.177.100.001756
ORF1ab/nsp5A-B131R131MaGgaTg22B.1.2320.001075
ORF1ab/nsp5A-B131R131RagGagA22B.1.360.000292
ORF1ab/nsp5A-B131R131KaGgaAg22B.1.617.20.000008
ORF1ab/nsp5A-B131R131RagGagA22B.1.6210.000177
ORF1ab/nsp5A-B131R131RagGagA11A.210.00277
ORF1ab/nsp5A-B131R131RagGagA11A.23.10.000704
ORF1ab/nsp5A-B131R131SagGagT11A.50.001923
ORF1ab/nsp5A-B131R131RagGagA11A.50.001923
ORF1ab/nsp5A-B131R131delAGG---11AD.20.000219
ORF1ab/nsp5A-B131R131RagGagA11AE.80.000489
ORF1ab/nsp5A-B131R131CAgGTgT11All0
ORF1ab/nsp5A-B131R131del2aGGa--11All0
ORF1ab/nsp5A-B131R131RagGagA11AY.100.00053
ORF1ab/nsp5A-B131R131RagGagA11AY.1050.000643
ORF1ab/nsp5A-B131R131RagGagA11AY.1060.000335
ORF1ab/nsp5A-B131R131delAGG---11AY.1080.001103
ORF1ab/nsp5A-B131R131RagGagA11AY.1160.000287
ORF1ab/nsp5A-B131R131IaGGaTT11AY.1200.000037
ORF1ab/nsp5A-B131R131RagGagA11AY.120.10.000321
ORF1ab/nsp5A-B131R131SagGagT11AY.130.000161
ORF1ab/nsp5A-B131R131RAggCgg11AY.16.10.00047
ORF1ab/nsp5A-B131R131RagGagA11AY.240.000431
ORF1ab/nsp5A-B131R131delAGG---11AY.250.000006
ORF1ab/nsp5A-B131R131MaGgaTg11AY.250.000006
ORF1ab/nsp5A-B131R131RagGagA11AY.330.000067
ORF1ab/nsp5A-B131R131RagGagA11AY.360.000148
ORF1ab/nsp5A-B131R131RagGagA11AY.390.000025
ORF1ab/nsp5A-B131R131RagGagA11AY.4.30.000842
ORF1ab/nsp5A-B131R131del2aGGa--11AY.4.50.000107
ORF1ab/nsp5A-B131R131delAGG---11AY.4.50.000107
ORF1ab/nsp5A-B131R131RagGagA11AY.420.00004
ORF1ab/nsp5A-B131R131SagGagT11AY.440.000006
ORF1ab/nsp5A-B131R131MaGgaTg11AY.440.000006
ORF1ab/nsp5A-B131R131RagGagA11AY.450.000122
ORF1ab/nsp5A-B131R131RagGagA11AY.46.20.000635
ORF1ab/nsp5A-B131R131RagGagA11AY.46.40.000165
ORF1ab/nsp5A-B131R131KaGgaAg11AY.60.000041
ORF1ab/nsp5A-B131R131RagGagA11AY.610.000105
ORF1ab/nsp5A-B131R131RagGagA11AY.70.000196
ORF1ab/nsp5A-B131R131delAGG---11AY.75.10.00018
ORF1ab/nsp5A-B131R131MaGgaTg11AY.980.000079
ORF1ab/nsp5A-B131R131del1aGga-g11AY.99.10.001553
ORF1ab/nsp5A-B131R131RagGagA11B0.000128
ORF1ab/nsp5A-B131R131KaGgaAg11B0.000128
ORF1ab/nsp5A-B131R131CAgGTgT11B.10.000009
ORF1ab/nsp5A-B131R131KaGgaAg11B.10.000009
ORF1ab/nsp5A-B131R131QAGGCAA11B.1.10.000018
ORF1ab/nsp5A-B131R131del1aGga-g11B.1.10.000018
ORF1ab/nsp5A-B131R131SagGagT11B.1.10.000018
ORF1ab/nsp5A-B131R131TaGgaCg11B.1.1.1640.005155
ORF1ab/nsp5A-B131R131RagGagA11B.1.1.280.000311
ORF1ab/nsp5A-B131R131RagGagA11B.1.1.2910.000742
ORF1ab/nsp5A-B131R131RagGagA11B.1.1.3010.001179
ORF1ab/nsp5A-B131R131RagGagA11B.1.1.330.000421
ORF1ab/nsp5A-B131R131RagGagA11B.1.1.5000.02
ORF1ab/nsp5A-B131R131GAggGgg11B.1.1.70.000001
ORF1ab/nsp5A-B131R131WAggTgg11B.1.1.700.000341
ORF1ab/nsp5A-B131R131MaGgaTg11B.1.1170.0125
ORF1ab/nsp5A-B131R131SagGagT11B.1.1180.006711
ORF1ab/nsp5A-B131R131RagGagA11B.1.1490.003425
ORF1ab/nsp5A-B131R131SagGagT11B.1.1600.000031
ORF1ab/nsp5A-B131R131GAggGgg11B.1.1600.000031
ORF1ab/nsp5A-B131R131RagGagA11B.1.1600.000031
ORF1ab/nsp5A-B131R131RAggCgg11B.1.160.140.002119
ORF1ab/nsp5A-B131R131delAGG---11B.1.1770.000013
ORF1ab/nsp5A-B131R131MaGgaTg11B.1.177.330.001645
ORF1ab/nsp5A-B131R131delAGG---11B.1.177.40.000211
ORF1ab/nsp5A-B131R131RagGagA11B.1.177.40.000211
ORF1ab/nsp5A-B131R131KaGgaAg11B.1.177.550.002331
ORF1ab/nsp5A-B131R131del1aGga-g11B.1.177.770.000726
ORF1ab/nsp5A-B131R131MaGgaTg11B.1.177.870.000728
ORF1ab/nsp5A-B131R131del1aGga-g11B.1.20.000009
ORF1ab/nsp5A-B131R131TaGgaCg11B.1.20.000009
ORF1ab/nsp5A-B131R131WAggTgg11B.1.20.000009
ORF1ab/nsp5A-B131R131GAggGgg11B.1.20.000009
ORF1ab/nsp5A-B131R131RagGagA11B.1.2100.002132
ORF1ab/nsp5A-B131R131RagGagA11B.1.2210.000071
ORF1ab/nsp5A-B131R131RagGagA11B.1.2320.000537
ORF1ab/nsp5A-B131R131RagGagA11B.1.2340.000132
ORF1ab/nsp5A-B131R131MaGgaTg11B.1.2580.000067
ORF1ab/nsp5A-B131R131WAggTgg11B.1.2580.000067
ORF1ab/nsp5A-B131R131SagGagT11B.1.2580.000067
ORF1ab/nsp5A-B131R131delAGG---11B.1.258.30.001675
ORF1ab/nsp5A-B131R131RAggCgg11B.1.2650.001271
ORF1ab/nsp5A-B131R131RagGagA11B.1.36.120.009615
ORF1ab/nsp5A-B131R131delAGG---11B.1.36.170.000494
ORF1ab/nsp5A-B131R131MaGgaTg11B.1.3960.000706
ORF1ab/nsp5A-B131R131delAGG---11B.1.4150.014286
ORF1ab/nsp5A-B131R131GAggGgg11B.1.4170.028571
ORF1ab/nsp5A-B131R131WAggTgg11B.1.4170.028571
ORF1ab/nsp5A-B131R131RagGagA11B.1.5260.000024
ORF1ab/nsp5A-B131R131RagGagA11B.1.5600.00463
ORF1ab/nsp5A-B131R131SagGagC11B.1.5950.000261
ORF1ab/nsp5A-B131R131RagGagA11B.1.617.10.000129
ORF1ab/nsp5A-B131R131delAGG---11B.1.617.20.000004
ORF1ab/nsp5A-B131R131QAGgCAg11B.1.617.20.000004
ORF1ab/nsp5A-B131R131del1Agg-gg11B.1.617.20.000004
ORF1ab/nsp5A-B131R131RagGagA11B.1.6200.000946
ORF1ab/nsp5A-B131R131RagGagA11B.1.6370.000073
ORF1ab/nsp5A-B131R131SagGagT11B.390.002331
ORF1ab/nsp5A-B131R131GAggGgg11B.6.60.000889
ORF1ab/nsp5A-B131R131SagGagT11C.350.000774
ORF1ab/nsp5A-B131R131MaGgaTg11D.20.000075
ORF1ab/nsp5A-B131R131TaGgaCg11D.20.000075
ORF1ab/nsp5A-B131R131delAGG---11N.40.004255
ORF1ab/nsp5A-B131R131RagGagA11P.1.120.000484
ORF1ab/nsp5A-B131R131RagGagA11P.1.160.000374