CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 121

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B121S121LS3384LnonsyntCatTa120912060.99751910415-10417
ORF1ab/nsp5A-B121S121LS3384LnonsynTCaCTa120920.0016542610415-10417
ORF1ab/nsp5A-B121S121LS3384LnonsynTCACTT120910.0008271310415-10417
ORF1ab/nsp5A-B121S121SS3384SsyntcAtcG7684480.58333310415-10417
ORF1ab/nsp5A-B121S121SS3384SsyntcAtcT7683150.41015610415-10417
ORF1ab/nsp5A-B121S121SS3384SsyntcAtcC76850.0065104210415-10417
ORF1ab/nsp5A-B121S121AS3384AnonsynTcaGca2424110415-10417
ORF1ab/nsp5A-B121S121XS3384XnonsyntCatAa1818110415-10417
ORF1ab/nsp5A-B121S121delS3384deldelTCA---1818110415-10417
ORF1ab/nsp5A-B121S121TS3384TnonsynTcaAca1515110415-10417
ORF1ab/nsp5A-B121S121PS3384PnonsynTcaCca320.66666710415-10417
ORF1ab/nsp5A-B121S121PS3384PnonsynTcACcT310.33333310415-10417
ORF1ab/nsp5A-B121S121del1S3384del1deltCat-a22110415-10417
ORF1ab/nsp5A-B121S121del2S3384del2delTCA--T11110415-10417
ORF1ab/nsp5A-B121S121FS3384FnonsyntCAtTT11110415-10417

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B121S121LtCatTa12061209All0.000231
ORF1ab/nsp5A-B121S121LTCaCTa21209All0
ORF1ab/nsp5A-B121S121LTCACTT11209All0
ORF1ab/nsp5A-B121S121StcAtcG448768All0.000086
ORF1ab/nsp5A-B121S121StcAtcT315768All0.00006
ORF1ab/nsp5A-B121S121StcAtcC5768All0.000001
ORF1ab/nsp5A-B121S121StcAtcG356356B.1.4290.008376
ORF1ab/nsp5A-B121S121StcAtcT296308B.10.002711
ORF1ab/nsp5A-B121S121StcAtcG11308B.10.000101
ORF1ab/nsp5A-B121S121StcAtcC1308B.10.000009
ORF1ab/nsp5A-B121S121LtCatTa256256AY.40.000398
ORF1ab/nsp5A-B121S121LtCatTa222222AY.430.000984
ORF1ab/nsp5A-B121S121LtCatTa185185B.1.1.70.000166
ORF1ab/nsp5A-B121S121LtCatTa174174B.1.6260.994286
ORF1ab/nsp5A-B121S121LtCatTa3637B.1.617.20.000136
ORF1ab/nsp5A-B121S121LTCaCTa137B.1.617.20.000004
ORF1ab/nsp5A-B121S121LtCatTa2727B.1.1600.000842
ORF1ab/nsp5A-B121S121LtCatTa2727B.1.6210.00239
ORF1ab/nsp5A-B121S121ATcaGca2424All0.000005
ORF1ab/nsp5A-B121S121LtCatTa2222AY.250.000132
ORF1ab/nsp5A-B121S121LtCatTa2020AY.30.000199
ORF1ab/nsp5A-B121S121LtCatTa2020B.1.1.2970.044743
ORF1ab/nsp5A-B121S121delTCA---1818All0.000003
ORF1ab/nsp5A-B121S121XtCatAa1818All0.000003
ORF1ab/nsp5A-B121S121LtCatTa1616B.10.000147
ORF1ab/nsp5A-B121S121TTcaAca1515All0.000003
ORF1ab/nsp5A-B121S121StcAtcG1415AY.40.000022
ORF1ab/nsp5A-B121S121StcAtcC115AY.40.000002
ORF1ab/nsp5A-B121S121StcAtcG1415B.1.1.70.000013
ORF1ab/nsp5A-B121S121StcAtcC115B.1.1.70.000001
ORF1ab/nsp5A-B121S121ATcaGca1313C.370.001509
ORF1ab/nsp5A-B121S121LtCatTa1212AY.260.00034
ORF1ab/nsp5A-B121S121LtCatTa1111AY.23.10.004591
ORF1ab/nsp5A-B121S121LtCatTa1010AY.200.000389
ORF1ab/nsp5A-B121S121StcAtcG1010B.1.2580.000665
ORF1ab/nsp5A-B121S121LtCatTa1010B.1.5820.004907
ORF1ab/nsp5A-B121S121StcAtcG99B.1.4270.000454
ORF1ab/nsp5A-B121S121LtCatTa88A.10.002255
ORF1ab/nsp5A-B121S121LtCatTa88B.1.20.00007
ORF1ab/nsp5A-B121S121LtCatTa88P.10.000126
ORF1ab/nsp5A-B121S121LtCatTa77AY.1030.000043
ORF1ab/nsp5A-B121S121XtCatAa77B.10.000064
ORF1ab/nsp5A-B121S121StcAtcG67B.1.617.20.000023
ORF1ab/nsp5A-B121S121StcAtcC17B.1.617.20.000004
ORF1ab/nsp5A-B121S121StcAtcG66AY.1020.000159
ORF1ab/nsp5A-B121S121TTcaAca66AY.40.000009
ORF1ab/nsp5A-B121S121LtCatTa66AY.440.000037
ORF1ab/nsp5A-B121S121delTCA---66B.1.1.70.000005
ORF1ab/nsp5A-B121S121LtCatTa66B.1.4270.000303
ORF1ab/nsp5A-B121S121LtCatTa66B.1.6090.002876
ORF1ab/nsp5A-B121S121LtCatTa55AY.390.000124
ORF1ab/nsp5A-B121S121StcAtcG55AY.39.10.000198
ORF1ab/nsp5A-B121S121LtCatTa55AY.4.20.000108
ORF1ab/nsp5A-B121S121StcAtcT45B.1.20.000035
ORF1ab/nsp5A-B121S121StcAtcG15B.1.20.000009
ORF1ab/nsp5A-B121S121ATcaGca55B.1.258.40.017241
ORF1ab/nsp5A-B121S121delTCA---440.222222
ORF1ab/nsp5A-B121S121LtCatTa44AY.470.000124
ORF1ab/nsp5A-B121S121LtCatTa44B.1.10.000073
ORF1ab/nsp5A-B121S121LtCatTa44B.1.1770.000053
ORF1ab/nsp5A-B121S121LtCatTa44B.1.360.000584
ORF1ab/nsp5A-B121S121LtCatTa44B.1.4290.000094
ORF1ab/nsp5A-B121S121StcAtcT44B.1.9.50.022727
ORF1ab/nsp5A-B121S121LtCatTa130.055556
ORF1ab/nsp5A-B121S121LTCaCTa130.055556
ORF1ab/nsp5A-B121S121LTCACTT130.055556
ORF1ab/nsp5A-B121S121PTcaCca23All0
ORF1ab/nsp5A-B121S121PTcACcT13All0
ORF1ab/nsp5A-B121S121LtCatTa33AY.1020.00008
ORF1ab/nsp5A-B121S121delTCA---33AY.40.000005
ORF1ab/nsp5A-B121S121XtCatAa33AY.430.000013
ORF1ab/nsp5A-B121S121LtCatTa33AY.460.000312
ORF1ab/nsp5A-B121S121LtCatTa33AY.480.001395
ORF1ab/nsp5A-B121S121LtCatTa33B.1.1.2410.006211
ORF1ab/nsp5A-B121S121LtCatTa33B.1.1.3510.00838
ORF1ab/nsp5A-B121S121StcAtcT33B.1.1.3850.013393
ORF1ab/nsp5A-B121S121LtCatTa33B.1.177.600.000655
ORF1ab/nsp5A-B121S121LtCatTa33B.1.177.830.004444
ORF1ab/nsp5A-B121S121PTcACcT120.055556
ORF1ab/nsp5A-B121S121PTcaCca120.055556
ORF1ab/nsp5A-B121S121del1tCat-a22All0
ORF1ab/nsp5A-B121S121LtCatTa22AY.1040.003968
ORF1ab/nsp5A-B121S121LtCatTa22AY.1200.000074
ORF1ab/nsp5A-B121S121StcAtcG22AY.230.000139
ORF1ab/nsp5A-B121S121LtCatTa22AY.330.000134
ORF1ab/nsp5A-B121S121ATcaGca22AY.40.000003
ORF1ab/nsp5A-B121S121LtCatTa22AY.50.000041
ORF1ab/nsp5A-B121S121LtCatTa22AY.610.00021
ORF1ab/nsp5A-B121S121LtCatTa22AY.710.00095
ORF1ab/nsp5A-B121S121LtCatTa22AY.730.001331
ORF1ab/nsp5A-B121S121LtCatTa22AY.750.000112
ORF1ab/nsp5A-B121S121XtCatAa22B0.000256
ORF1ab/nsp5A-B121S121LtCatTa22B.1.1.3170.000823
ORF1ab/nsp5A-B121S121LtCatTa22B.1.177.860.000367
ORF1ab/nsp5A-B121S121StcAtcT22B.1.2980.004228
ORF1ab/nsp5A-B121S121TTcaAca22B.1.5260.000047
ORF1ab/nsp5A-B121S121TTcaAca22B.1.617.20.000008
ORF1ab/nsp5A-B121S121del1tCat-a22B.1.617.30.00597
ORF1ab/nsp5A-B121S121LtCatTa22B.1.6370.000146
ORF1ab/nsp5A-B121S121XtCatAa22B.60.00182
ORF1ab/nsp5A-B121S121LtCatTa22D.20.00015
ORF1ab/nsp5A-B121S121FtCAtTT110.055556
ORF1ab/nsp5A-B121S121StcAtcT110.055556
ORF1ab/nsp5A-B121S121LtCatTa11A0.000387
ORF1ab/nsp5A-B121S121XtCatAa11A0.000387
ORF1ab/nsp5A-B121S121StcAtcT11A.20.000662
ORF1ab/nsp5A-B121S121del2TCA--T11All0
ORF1ab/nsp5A-B121S121FtCAtTT11All0
ORF1ab/nsp5A-B121S121TTcaAca11AY.1030.000006
ORF1ab/nsp5A-B121S121LtCatTa11AY.1130.000142
ORF1ab/nsp5A-B121S121LtCatTa11AY.1190.000035
ORF1ab/nsp5A-B121S121StcAtcG11AY.140.000088
ORF1ab/nsp5A-B121S121LtCatTa11AY.230.00007
ORF1ab/nsp5A-B121S121delTCA---11AY.250.000006
ORF1ab/nsp5A-B121S121StcAtcG11AY.250.000006
ORF1ab/nsp5A-B121S121LtCatTa11AY.290.000016
ORF1ab/nsp5A-B121S121LtCatTa11AY.340.000097
ORF1ab/nsp5A-B121S121StcAtcG11AY.390.000025
ORF1ab/nsp5A-B121S121StcAtcG11AY.4.20.000022
ORF1ab/nsp5A-B121S121LtCatTa11AY.4.50.000107
ORF1ab/nsp5A-B121S121LtCatTa11AY.420.00004
ORF1ab/nsp5A-B121S121StcAtcG11AY.430.000004
ORF1ab/nsp5A-B121S121LtCatTa11AY.450.000122
ORF1ab/nsp5A-B121S121LtCatTa11AY.5.30.000337
ORF1ab/nsp5A-B121S121LtCatTa11AY.5.40.000277
ORF1ab/nsp5A-B121S121XtCatAa11AY.520.000814
ORF1ab/nsp5A-B121S121LtCatTa11AY.530.000288
ORF1ab/nsp5A-B121S121LtCatTa11AY.60.000041
ORF1ab/nsp5A-B121S121delTCA---11AY.620.000436
ORF1ab/nsp5A-B121S121LtCatTa11AY.670.000464
ORF1ab/nsp5A-B121S121LtCatTa11AY.680.000274
ORF1ab/nsp5A-B121S121TTcaAca11AY.9.20.000037
ORF1ab/nsp5A-B121S121LtCatTa11AY.940.000443
ORF1ab/nsp5A-B121S121ATcaGca11B0.000128
ORF1ab/nsp5A-B121S121TTcaAca11B.10.000009
ORF1ab/nsp5A-B121S121StcAtcG11B.1.10.000018
ORF1ab/nsp5A-B121S121TTcaAca11B.1.10.000018
ORF1ab/nsp5A-B121S121StcAtcC11B.1.1.2310.003096
ORF1ab/nsp5A-B121S121LtCatTa11B.1.1.3690.000446
ORF1ab/nsp5A-B121S121PTcaCca11B.1.1.5190.00004
ORF1ab/nsp5A-B121S121ATcaGca11B.1.1.5190.00004
ORF1ab/nsp5A-B121S121LtCatTa11B.1.1.5210.005348
ORF1ab/nsp5A-B121S121ATcaGca11B.1.1.70.000001
ORF1ab/nsp5A-B121S121del2TCA--T11B.1.1.70.000001
ORF1ab/nsp5A-B121S121LtCatTa11B.1.160.150.00495
ORF1ab/nsp5A-B121S121delTCA---11B.1.1770.000013
ORF1ab/nsp5A-B121S121StcAtcG11B.1.177.20.004545
ORF1ab/nsp5A-B121S121delTCA---11B.1.177.40.000211
ORF1ab/nsp5A-B121S121StcAtcT11B.1.177.730.000566
ORF1ab/nsp5A-B121S121LtCatTa11B.1.2210.000071
ORF1ab/nsp5A-B121S121LtCatTa11B.1.258.170.000104
ORF1ab/nsp5A-B121S121XtCatAa11B.1.3010.005917
ORF1ab/nsp5A-B121S121LtCatTa11B.1.3510.00003
ORF1ab/nsp5A-B121S121StcAtcG11B.1.36.290.000517
ORF1ab/nsp5A-B121S121LtCatTa11B.1.36.290.000517
ORF1ab/nsp5A-B121S121LtCatTa11B.1.3970.004854
ORF1ab/nsp5A-B121S121StcAtcT11B.1.4150.014286
ORF1ab/nsp5A-B121S121StcAtcG11B.1.429.10.012048
ORF1ab/nsp5A-B121S121LtCatTa11B.1.4480.002625
ORF1ab/nsp5A-B121S121TTcaAca11B.1.5250.000113
ORF1ab/nsp5A-B121S121LtCatTa11B.1.5260.000024
ORF1ab/nsp5A-B121S121LtCatTa11B.1.5610.000397
ORF1ab/nsp5A-B121S121StcAtcG11B.1.5650.00081
ORF1ab/nsp5A-B121S121StcAtcG11B.1.5880.00091
ORF1ab/nsp5A-B121S121StcAtcT11B.1.5960.000087
ORF1ab/nsp5A-B121S121LtCatTa11B.1.617.10.000129
ORF1ab/nsp5A-B121S121StcAtcG11B.1.6210.000089
ORF1ab/nsp5A-B121S121XtCatAa11B.1.6230.000536
ORF1ab/nsp5A-B121S121LtCatTa11B.1.6280.000352
ORF1ab/nsp5A-B121S121StcAtcT11B.1.88.10.004808
ORF1ab/nsp5A-B121S121LtCatTa11B.450.003831
ORF1ab/nsp5A-B121S121ATcaGca11C.40.01
ORF1ab/nsp5A-B121S121delTCA---11N.40.004255
ORF1ab/nsp5A-B121S121StcAtcG11P.1.140.000048
ORF1ab/nsp5A-B121S121LtCatTa11P.1.140.000048
ORF1ab/nsp5A-B121S121LtCatTa11P.1.20.001156
ORF1ab/nsp5A-B121S121LtCatTa11Q.80.000165
ORF1ab/nsp5A-B121S121StcAtcG11W.10.008696