CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 108 | P108S | P3371S | nonsyn | Cca | Tca | 20257 | 20243 | 0.999309 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108S | P3371S | nonsyn | CcA | TcG | 20257 | 14 | 0.000691119 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108L | P3371L | nonsyn | cCa | cTa | 2981 | 2973 | 0.997316 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108L | P3371L | nonsyn | CCa | TTa | 2981 | 6 | 0.00201275 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108L | P3371L | nonsyn | CCA | TTG | 2981 | 1 | 0.000335458 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108L | P3371L | nonsyn | cCA | cTG | 2981 | 1 | 0.000335458 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108Q | P3371Q | nonsyn | cCa | cAa | 171 | 171 | 1 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108P | P3371P | syn | ccA | ccG | 164 | 109 | 0.664634 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108P | P3371P | syn | ccA | ccT | 164 | 40 | 0.243902 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108P | P3371P | syn | ccA | ccC | 164 | 15 | 0.0914634 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108T | P3371T | nonsyn | Cca | Aca | 101 | 100 | 0.990099 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108T | P3371T | nonsyn | CcA | AcC | 101 | 1 | 0.00990099 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108del | P3371del | del | CCA | --- | 27 | 27 | 1 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108R | P3371R | nonsyn | cCa | cGa | 10 | 10 | 1 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108A | P3371A | nonsyn | Cca | Gca | 8 | 8 | 1 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108del1 | P3371del1 | del | cCA | cT- | 4 | 2 | 0.5 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108del1 | P3371del1 | del | Cca | -ca | 4 | 1 | 0.25 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108del1 | P3371del1 | del | ccA | cc- | 4 | 1 | 0.25 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108K | P3371K | nonsyn | CCa | AAa | 1 | 1 | 1 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108N | P3371N | nonsyn | CCA | AAC | 1 | 1 | 1 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108H | P3371H | nonsyn | cCA | cAC | 1 | 1 | 1 | 10376-10378 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 20243 | 20257 | All | 0.003872 |
ORF1ab/nsp5A-B | 108 | P108S | CcA | TcG | 14 | 20257 | All | 0.000003 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 9310 | 9311 | B.1.1.284 | 0.999893 |
ORF1ab/nsp5A-B | 108 | P108S | CcA | TcG | 1 | 9311 | B.1.1.284 | 0.000107 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3553 | 3553 | B.1.1.7 | 0.003181 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2973 | 2981 | All | 0.000569 |
ORF1ab/nsp5A-B | 108 | P108L | CCa | TTa | 6 | 2981 | All | 0.000001 |
ORF1ab/nsp5A-B | 108 | P108L | CCA | TTG | 1 | 2981 | All | 0 |
ORF1ab/nsp5A-B | 108 | P108L | cCA | cTG | 1 | 2981 | All | 0 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 831 | 831 | AY.77 | 0.936866 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 690 | 690 | AY.4 | 0.001074 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 616 | 616 | AY.26 | 0.017439 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 531 | 532 | AY.25 | 0.003194 |
ORF1ab/nsp5A-B | 108 | P108L | CCa | TTa | 1 | 532 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 508 | 508 | B.1.1.288 | 0.97318 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 501 | 501 | AY.4 | 0.00078 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 367 | 367 | B.1.526 | 0.008626 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 287 | 287 | AY.54 | 0.027365 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 283 | 283 | B.1.2 | 0.002492 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 262 | 262 | B.1.617.2 | 0.000987 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 235 | 235 | AY.70 | 0.048999 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 228 | 228 | B.1.1 | 0.004136 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 212 | 212 | B.1.1.135 | 0.995305 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 171 | 171 | All | 0.000033 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 168 | 168 | B.1.177.81 | 0.031806 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 109 | 164 | All | 0.000021 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccT | 40 | 164 | All | 0.000008 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccC | 15 | 164 | All | 0.000003 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 155 | 155 | AY.103 | 0.000962 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 147 | 148 | B.1.1.7 | 0.000132 |
ORF1ab/nsp5A-B | 108 | P108L | CCa | TTa | 1 | 148 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 146 | 146 | P.1.1 | 0.046379 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 141 | 141 | B.1.177 | 0.001857 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 128 | 128 | B.1.160 | 0.003992 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 125 | 125 | B.1.1.348 | 0.099522 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 119 | 119 | B.1.44 | 0.991667 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 117 | 117 | AY.25 | 0.000704 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 111 | 111 | AY.44 | 0.000676 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 104 | 104 | B.1 | 0.000953 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 100 | 101 | All | 0.000019 |
ORF1ab/nsp5A-B | 108 | P108T | CcA | AcC | 1 | 101 | All | 0 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 100 | 100 | P.1 | 0.001575 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 93 | 93 | B.1.351 | 0.002765 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 91 | 91 | AY.43 | 0.000403 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 79 | 79 | B.1.1.519 | 0.003137 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 67 | 79 | B.1.258 | 0.004459 |
ORF1ab/nsp5A-B | 108 | P108S | CcA | TcG | 12 | 79 | B.1.258 | 0.000799 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 79 | 79 | B.1.429 | 0.001859 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 72 | 72 | B.1.240 | 0.015521 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 69 | 69 | B.1 | 0.000632 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 66 | 66 | B.1.637 | 0.004823 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 63 | 63 | AY.3 | 0.000627 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 62 | 62 | AY.5 | 0.00128 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 62 | 62 | B.1.429 | 0.001459 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 59 | 60 | B.1.617.2 | 0.000222 |
ORF1ab/nsp5A-B | 108 | P108L | CCa | TTa | 1 | 60 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 58 | 58 | AY.43 | 0.000257 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 57 | 57 | N.5 | 0.100707 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 55 | 55 | B.1.221 | 0.003907 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 51 | 51 | B.1.1.320 | 0.927273 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 49 | 49 | B.1.258.15 | 0.924528 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 47 | 47 | AY.3 | 0.000467 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 46 | 46 | AY.5 | 0.00095 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 45 | 45 | AY.44 | 0.000274 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 43 | 43 | B.1.564.1 | 0.067823 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 42 | 42 | B.1.1.160 | 1 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 41 | 41 | B.1.1.37 | 0.007907 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 39 | 39 | AY.4.2 | 0.000846 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 38 | 38 | AY.39 | 0.000939 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 37 | 37 | AY.103 | 0.00023 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 37 | 37 | B.1.177 | 0.000487 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 36 | 36 | AY.20 | 0.001399 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 36 | 36 | AY.29 | 0.000568 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 35 | 35 | AY.20 | 0.00136 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 35 | 35 | B.1.221.1 | 0.101744 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 34 | 34 | R.1 | 0.00306 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 33 | 33 | AY.29.1 | 0.007277 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 23 | 31 | B.1.1.7 | 0.000021 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccT | 4 | 31 | B.1.1.7 | 0.000004 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccC | 4 | 31 | B.1.1.7 | 0.000004 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 30 | 30 | N.10 | 0.882353 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 28 | 28 | AY.39 | 0.000692 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 28 | 28 | B.1.351 | 0.000832 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccT | 21 | 28 | B.1.617.2 | 0.000079 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 7 | 28 | B.1.617.2 | 0.000026 |
ORF1ab/nsp5A-B | 108 | P108del | CCA | --- | 27 | 27 | All | 0.000005 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 27 | 27 | B.1.438.1 | 0.002896 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 27 | 27 | Q.4 | 0.012278 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 26 | 26 | B.1.1.519 | 0.001032 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 26 | 26 | B.1.318 | 1 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 24 | 24 | B.1.1 | 0.000435 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 24 | 24 | B.1.1.241 | 0.049689 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 23 | 23 | B.1.258.17 | 0.002391 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 22 | 22 | AY.47 | 0.000684 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 21 | 21 | AY.52 | 0.017101 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 21 | 21 | AY.75 | 0.001176 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 21 | 21 | B.1.258.11 | 0.008323 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 18 | 20 | AY.4 | 0.000028 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccC | 1 | 20 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccT | 1 | 20 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 20 | 20 | AY.9.1 | 0.001674 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 20 | 20 | B.1.1 | 0.000363 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 19 | 19 | AY.9 | 0.001284 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 18 | 18 | B.1.2 | 0.000158 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 18 | 18 | B.1.596 | 0.001568 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 17 | 17 | AY.106 | 0.005693 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 17 | 17 | AY.62 | 0.007407 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 17 | 17 | B.1.36 | 0.00248 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 17 | 17 | C.37 | 0.001973 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 16 | 16 | AY.119 | 0.000565 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 16 | 16 | AY.42 | 0.000644 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 16 | 16 | AY.99.2 | 0.001475 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 16 | 16 | B.1.320 | 0.019925 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 15 | 15 | B.1.1.318 | 0.004526 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 15 | 15 | B.1.221 | 0.001065 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 14 | 14 | AY.114 | 0.003235 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 14 | 14 | AY.33 | 0.000935 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 14 | 14 | AY.98 | 0.001106 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 14 | 14 | B.1.1.33 | 0.005892 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 14 | 14 | B.1.1.392 | 0.736842 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 13 | 13 | AY.39.1 | 0.000515 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 13 | 13 | AY.75 | 0.000728 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 13 | 13 | B.1.177.21 | 0.000994 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 12 | 12 | AY.117 | 0.001014 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 12 | 12 | AY.36 | 0.001779 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 12 | 12 | B.1.1.128 | 0.085106 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 12 | 12 | B.1.258 | 0.000799 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 11 | 11 | AY.120 | 0.000409 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 11 | 11 | AY.26 | 0.000311 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 11 | 11 | AY.9.2 | 0.000404 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 11 | 11 | B.1.177.60 | 0.002403 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 11 | 11 | C.35 | 0.008514 |
ORF1ab/nsp5A-B | 108 | P108R | cCa | cGa | 10 | 10 | All | 0.000002 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 7 | 10 | AY.103 | 0.000043 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccC | 3 | 10 | AY.103 | 0.000019 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 10 | 10 | B.1.1.50 | 0.006789 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 10 | 10 | B.1.595 | 0.00261 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 9 | 9 | AY.118 | 0.000564 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 9 | 9 | B.1.177.73 | 0.005096 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 9 | 9 | B.1.243 | 0.000626 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 9 | 9 | D.2 | 0.000675 |
ORF1ab/nsp5A-B | 108 | P108A | Cca | Gca | 8 | 8 | All | 0.000002 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp5A-B | 108 | P108del | CCA | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 8 | 8 | B.1.234 | 0.001056 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 8 | 8 | B.1.36.35 | 0.020833 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 8 | 8 | P.1.15 | 0.001859 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 7 | 7 | B.1.1.434 | 0.00244 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 7 | 7 | Q.8 | 0.001154 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 4 | 6 | AY.43 | 0.000018 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccT | 2 | 6 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 6 | 6 | B.1.1.1 | 0.00196 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 6 | 6 | B.1.1.10 | 0.006689 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 6 | 6 | B.1.311 | 0.001647 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 6 | 6 | B.1.564 | 0.002555 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 6 | 6 | B.1.609 | 0.002876 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | AP.1 | 0.007508 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | B.1.177.4 | 0.001055 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 5 | 5 | B.1.416 | 0.006345 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp5A-B | 108 | P108del | CCA | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp5A-B | 108 | P108L | CCA | TTG | 1 | 4 | 0.055556 | |
ORF1ab/nsp5A-B | 108 | P108L | CCa | TTa | 1 | 4 | 0.055556 | |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 4 | 0.055556 | |
ORF1ab/nsp5A-B | 108 | P108L | cCA | cTG | 1 | 4 | 0.055556 | |
ORF1ab/nsp5A-B | 108 | P108del1 | cCA | cT- | 2 | 4 | All | 0 |
ORF1ab/nsp5A-B | 108 | P108del1 | Cca | -ca | 1 | 4 | All | 0 |
ORF1ab/nsp5A-B | 108 | P108del1 | ccA | cc- | 1 | 4 | All | 0 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp5A-B | 108 | P108del | CCA | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccT | 4 | 4 | AY.40 | 0.003857 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | AY.46.5 | 0.000794 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | AY.99.1 | 0.006211 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | B.1.1.39 | 0.002039 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 4 | 4 | B.1.1.83 | 0.01084 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 4 | 4 | B.1.177.16 | 0.002658 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 4 | 4 | B.1.177.31 | 0.045977 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 4 | 4 | B.1.459 | 0.016327 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | B.1.517 | 0.001708 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 4 | 4 | C.16 | 0.004242 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 2 | 4 | P.1 | 0.000032 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccT | 2 | 4 | P.1 | 0.000032 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccC | 2 | 3 | 0.111111 | |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 3 | 0.055556 | |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp5A-B | 108 | P108A | Cca | Gca | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp5A-B | 108 | P108R | cCa | cGa | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp5A-B | 108 | P108R | cCa | cGa | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | AY.7.2 | 0.001678 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | AY.82 | 0.004071 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.1.170 | 0.003741 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.1.253 | 0.007519 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.1.265 | 0.009464 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 3 | 3 | B.1.1.269 | 0.00406 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 3 | 3 | B.1.1.291 | 0.002227 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.124 | 0.023438 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccT | 2 | 3 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 3 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.243.1 | 0.066667 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 3 | 3 | B.1.387 | 0.12 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.389 | 0.003006 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.459 | 0.012245 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.551 | 0.003871 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | P.1.2 | 0.003468 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | P.7 | 0.0131 |
ORF1ab/nsp5A-B | 108 | P108del1 | cCA | cT- | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 108 | P108S | CcA | TcG | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 108 | P108T | CcA | AcC | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp5A-B | 108 | P108R | cCa | cGa | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 2 | 2 | AY.80 | 0.002257 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B | 0.000256 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.1.56 | 0.035714 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp5A-B | 108 | P108R | cCa | cGa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp5A-B | 108 | P108del | CCA | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp5A-B | 108 | P108A | Cca | Gca | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.177.84 | 0.013333 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.223 | 0.005556 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.298 | 0.004228 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.390 | 0.021277 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | B.1.446 | 0.04 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | C.13 | 0.051282 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp5A-B | 108 | P108N | CCA | AAC | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 108 | P108K | CCa | AAa | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 108 | P108H | cCA | cAC | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp5A-B | 108 | P108K | CCa | AAa | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 108 | P108N | CCA | AAC | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 108 | P108H | cCA | cAC | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp5A-B | 108 | P108del | CCA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 108 | P108del | CCA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp5A-B | 108 | P108A | Cca | Gca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 108 | P108A | Cca | Gca | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 108 | P108del | CCA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp5A-B | 108 | P108del | CCA | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp5A-B | 108 | P108del | CCA | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccC | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp5A-B | 108 | P108L | CCa | TTa | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.14 | 0.017241 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.244 | 0.015385 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.267 | 0.010101 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.1.363 | 0.005988 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.425 | 0.045455 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.1.442 | 0.018519 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.45 | 0.014085 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.506 | 0.037037 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.110.1 | 0.1 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.153 | 0.018868 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.177.39 | 0.015385 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 108 | P108del | CCA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccC | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp5A-B | 108 | P108del | CCA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.214.1 | 0.02 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.215 | 0.009615 |
ORF1ab/nsp5A-B | 108 | P108del1 | Cca | -ca | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccC | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccT | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.355 | 0.011111 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.36.2 | 0.010753 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.383 | 0.009009 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp5A-B | 108 | P108L | CCa | TTa | 1 | 1 | B.1.44 | 0.008333 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp5A-B | 108 | P108del1 | ccA | cc- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp5A-B | 108 | P108A | Cca | Gca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp5A-B | 108 | P108del | CCA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.53 | 0.011765 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp5A-B | 108 | P108T | Cca | Aca | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | C.36.2 | 0.034483 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp5A-B | 108 | P108del | CCA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp5A-B | 108 | P108Q | cCa | cAa | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp5A-B | 108 | P108L | cCa | cTa | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | W.1 | 0.008696 |
ORF1ab/nsp5A-B | 108 | P108P | ccA | ccG | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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