CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 105

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp5A-B	105	R105R	R3368R	syn	cgC	cgT	25553	25441	0.995617	10367-10369
ORF1ab/nsp5A-B	105	R105R	R3368R	syn	cgC	cgA	25553	105	0.00410911	10367-10369
ORF1ab/nsp5A-B	105	R105R	R3368R	syn	cgC	cgG	25553	6	0.000234806	10367-10369
ORF1ab/nsp5A-B	105	R105R	R3368R	syn	CgC	AgG	25553	1	0.0000391343	10367-10369
ORF1ab/nsp5A-B	105	R105H	R3368H	nonsyn	cGc	cAc	397	396	0.997481	10367-10369
ORF1ab/nsp5A-B	105	R105H	R3368H	nonsyn	cGC	cAT	397	1	0.00251889	10367-10369
ORF1ab/nsp5A-B	105	R105L	R3368L	nonsyn	cGc	cTc	98	93	0.94898	10367-10369
ORF1ab/nsp5A-B	105	R105L	R3368L	nonsyn	cGC	cTT	98	3	0.0306122	10367-10369
ORF1ab/nsp5A-B	105	R105L	R3368L	nonsyn	cGC	cTA	98	1	0.0102041	10367-10369
ORF1ab/nsp5A-B	105	R105L	R3368L	nonsyn	CGC	TTA	98	1	0.0102041	10367-10369
ORF1ab/nsp5A-B	105	R105S	R3368S	nonsyn	Cgc	Agc	43	43	1	10367-10369
ORF1ab/nsp5A-B	105	R105del	R3368del	del	CGC	---	35	35	1	10367-10369
ORF1ab/nsp5A-B	105	R105C	R3368C	nonsyn	Cgc	Tgc	24	24	1	10367-10369
ORF1ab/nsp5A-B	105	R105del1	R3368del1	del	cGc	c-c	6	4	0.666667	10367-10369
ORF1ab/nsp5A-B	105	R105del1	R3368del1	del	Cgc	-gc	6	1	0.166667	10367-10369
ORF1ab/nsp5A-B	105	R105del1	R3368del1	del	cgC	cg-	6	1	0.166667	10367-10369
ORF1ab/nsp5A-B	105	R105P	R3368P	nonsyn	cGc	cCc	5	5	1	10367-10369
ORF1ab/nsp5A-B	105	R105del2	R3368del2	del	CGc	--c	4	4	1	10367-10369
ORF1ab/nsp5A-B	105	R105X	R3368X	nonsyn	CgC	TgA	3	3	1	10367-10369
ORF1ab/nsp5A-B	105	R105G	R3368G	nonsyn	Cgc	Ggc	3	3	1	10367-10369
ORF1ab/nsp5A-B	105	R105N	R3368N	nonsyn	CGc	AAc	2	2	1	10367-10369
ORF1ab/nsp5A-B	105	R105D	R3368D	nonsyn	CGc	GAc	2	2	1	10367-10369
ORF1ab/nsp5A-B	105	R105K	R3368K	nonsyn	CGC	AAG	2	2	1	10367-10369
ORF1ab/nsp5A-B	105	R105E	R3368E	nonsyn	CGC	GAG	2	2	1	10367-10369
ORF1ab/nsp5A-B	105	R105F	R3368F	nonsyn	CGC	TTT	2	1	0.5	10367-10369
ORF1ab/nsp5A-B	105	R105F	R3368F	nonsyn	CGc	TTc	2	1	0.5	10367-10369
ORF1ab/nsp5A-B	105	R105Y	R3368Y	nonsyn	CGc	TAc	1	1	1	10367-10369

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	25441	25553	All	0.004866
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	105	25553	All	0.00002
ORF1ab/nsp5A-B	105	R105R	cgC	cgG	6	25553	All	0.000001
ORF1ab/nsp5A-B	105	R105R	CgC	AgG	1	25553	All	0
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4839	4893	B.1.1.7	0.004332
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	53	4893	B.1.1.7	0.000047
ORF1ab/nsp5A-B	105	R105R	cgC	cgG	1	4893	B.1.1.7	0.000001
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2399	2399	B.1.617.2	0.009033
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1423	1423	B.1.351	0.042301
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1316	1318	AY.4	0.002048
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	1	1318	AY.4	0.000002
ORF1ab/nsp5A-B	105	R105R	cgC	cgG	1	1318	AY.4	0.000002
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1238	1238	AY.44	0.007535
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1205	1205	AZ.2	0.989327
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1191	1191	AY.102	0.031578
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	735	736	AY.3	0.007311
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	1	736	AY.3	0.00001
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	620	621	B.1.2	0.005459
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	1	621	B.1.2	0.000009
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	563	563	AY.39.1	0.022302
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	498	500	AY.103	0.003092
ORF1ab/nsp5A-B	105	R105R	cgC	cgG	2	500	AY.103	0.000012
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	471	471	AY.100	0.021669
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	418	440	B.1.1	0.007583
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	22	440	B.1.1	0.000399
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	410	411	B.1	0.003755
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	1	411	B.1	0.000009
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	404	404	B.1.429	0.009506
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	396	397	All	0.000076
ORF1ab/nsp5A-B	105	R105H	cGC	cAT	1	397	All	0
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	378	379	P.1	0.005955
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	1	379	P.1	0.000016
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	361	361	AY.43	0.001599
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	355	355	AY.25	0.002135
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	340	340	B.1.1.286	0.985507
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	263	263	B.1.427	0.013281
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	252	252	B.1.1.1	0.082326
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	228	228	B.1.1.372	0.157025
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	186	191	B.1.177	0.002449
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	5	191	B.1.177	0.000066
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	178	180	AY.39	0.004399
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	2	180	AY.39	0.000049
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	151	151	B.1.1.153	0.165389
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	142	143	AY.4.2	0.00308
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	1	143	AY.4.2	0.000022
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	128	128	B.1.596	0.011154
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	124	124	C.2.1	0.826667
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	121	121	AZ.2.1	0.98374
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	108	109	B.1.526	0.002538
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	1	109	B.1.526	0.000024
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	107	107	AY.117	0.009043
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	107	107	B.1.621	0.009472
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	103	103	AY.93	0.028127
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	93	98	All	0.000018
ORF1ab/nsp5A-B	105	R105L	cGC	cTT	3	98	All	0.000001
ORF1ab/nsp5A-B	105	R105L	cGC	cTA	1	98	All	0
ORF1ab/nsp5A-B	105	R105L	CGC	TTA	1	98	All	0
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	94	94	B.1.1.301	0.110849
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	91	91	B.1.177.60	0.019878
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	91	91	B.1.588	0.082803
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	88	88	AY.5	0.001817
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	87	87	AY.121	0.011773
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	79	79	AY.33	0.005275
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	79	79	B.1.406	0.478788
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	71	71	B.1.177.80	0.135755
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	67	68	D.2	0.005028
ORF1ab/nsp5A-B	105	R105L	cGC	cTT	1	68	D.2	0.000075
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	67	67	AY.6	0.002756
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	65	65	B.1.1.263	0.101246
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	65	65	B.1.177.82	0.031026
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	63	63	AY.46	0.006557
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	54	54	B.1.258	0.003594
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	51	53	B.1.243	0.003549
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	2	53	B.1.243	0.000139
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	52	52	B.1.36	0.007587
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	52	52	B.1.517	0.022203
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	51	51	B.1.160	0.001591
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	49	49	AY.45	0.005963
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	49	49	B.1.1.432	0.062025
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	48	48	C.37	0.005571
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	47	47	AY.120	0.001747
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	47	47	B.1.1.214	0.002606
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	46	46	B.1.609	0.022052
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	36	45	AY.29	0.000568
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	9	45	AY.29	0.000142
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	44	44	AY.119	0.001554
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	44	44	AY.4	0.000068
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	43	43	All	0.000008
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	43	43	AY.25	0.000259
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	43	43	Q.8	0.007091
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	41	41	B.1.1.519	0.001628
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	40	40	AY.29.1	0.00882
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	40	40	P.1.14	0.001912
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	39	39	AY.47	0.001213
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	38	38	AY.20	0.001477
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	38	38	AY.9.2	0.001396
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	38	38	B.1.177.15	0.023975
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	37	37	AY.46.6	0.002672
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	36	36	AY.111	0.006593
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	36	36	AY.49	0.115016
ORF1ab/nsp5A-B	105	R105del	CGC	---	35	35	All	0.000007
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	33	33	AY.87	0.027477
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	33	33	B.1.617.2	0.000124
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	30	30	AY.5.3	0.010121
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	30	30	B.1.349	0.021444
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	30	30	Q.1	0.00379
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	29	29	AY.34	0.002812
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	29	29	AY.98	0.002291
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	29	29	B.1.1.358	1
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	28	28	AY.26	0.000793
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	28	28	B.1.177.65	0.018629
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	27	27	B.1.311	0.007414
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	27	27	B.1.595	0.007046
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	27	27	C.2	0.435484
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	26	26	B.1.177.77	0.018882
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	24	25	A.23.1	0.016901
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	1	25	A.23.1	0.000704
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	25	25	AY.118	0.001566
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	25	25	AY.34.1	0.012749
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	25	25	B.1.1.28	0.007781
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	25	25	B.1.1.318	0.007544
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	24	24	All	0.000005
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	24	24	AY.99.2	0.002212
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	23	23	B.1.2	0.000203
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	23	23	B.1.234	0.003035
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	23	23	B.1.400	0.009867
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	22	22	B.1.1.306	0.009645
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	22	22	B.1.177.86	0.004036
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	21	21	AY.114	0.004853
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	21	21	AY.75	0.001176
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	20	20	B.1.221	0.001421
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	19	20	B.1.258.17	0.001975
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	1	20	B.1.258.17	0.000104
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	19	19	AY.108	0.020948
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	19	19	AY.23	0.001325
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	19	19	B.1.293	0.2375
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	18	18	AY.46.5	0.003571
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	18	18	C.39	0.339623
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	17	17	AY.110	0.001916
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	17	17	AY.67	0.007892
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	17	17	B.1	0.000156
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	17	17	B.1.466.2	0.006651
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	17	17	B.1.575	0.005158
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	17	17	B.1.633	0.708333
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	17	17	C.23	0.098837
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	16	16	AY.4.5	0.00172
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	16	16	B.1.1.7	0.000014
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	16	16	B.1.146	0.067797
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	16	16	B.1.525	0.001811
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	16	16	B.1.617.1	0.002063
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	16	16	B.1.623	0.008584
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	15	15	AY.105	0.009646
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	15	15	AY.14	0.00132
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	15	15	AY.48	0.006977
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	15	15	AY.75.1	0.002705
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	15	15	AY.85	0.006408
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	15	15	B.1.1.220	0.027881
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	15	15	B.1.1.434	0.005228
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	15	15	B.1.36.27	0.01145
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	14	14	AY.120.1	0.004494
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	14	14	AY.13	0.002254
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	14	14	AY.9	0.000946
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	14	14	B.1.177.35	0.009675
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	13	13	AY.27	0.000841
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	13	13	AY.61	0.001362
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	13	13	B.1.1.207	0.015366
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	13	13	B.1.564.1	0.020505
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	13	13	P.1.15	0.00302
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	12	12	AY.69	0.00224
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	12	12	B.1.177	0.000158
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	11	11	A.2.5	0.005489
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	11	11	AY.113	0.001566
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	11	11	AY.30	0.004353
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	11	11	AY.42	0.000443
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	11	11	AY.74	0.001272
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	11	11	AY.9.1	0.000921
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	11	11	B.1.1.25	0.006254
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	11	11	B.1.1.7	0.00001
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	11	11	B.1.177.32	0.014845
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	11	11	P.1.12	0.005324
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	10	10	AY.103	0.000062
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	10	10	AY.62	0.004357
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	10	10	AY.98.1	0.000484
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	10	10	B.1.1.354	0.04386
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	10	10	B.1.637	0.000731
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	10	10	P.1.10	0.002695
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	9	9	AY.5.4	0.00249
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	9	9	B.1.1.369	0.004016
ORF1ab/nsp5A-B	105	R105del	CGC	---	9	9	B.1.1.7	0.000008
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	9	9	R.1	0.00081
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	8	8	AD.2	0.001752
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	8	8	AY.3.1	0.000682
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	8	8	AY.38	0.003994
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	8	8	B.1.1.222	0.001632
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	8	8	B.1.1.519	0.000318
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	8	8	B.1.177.57	0.002248
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	8	8	B.1.36.17	0.003953
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	8	8	B.1.36.29	0.004139
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	8	8	B.1.380	0.05298
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	8	8	B.1.396	0.005646
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	8	8	B.1.525	0.000905
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	8	8	C.35	0.006192
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	8	8	D.2	0.0006
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	8	8	P.2	0.001493
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	7	7	AY.23.1	0.002922
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	7	7	AY.4.2	0.000152
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	7	7	AY.43	0.000031
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	7	7	AY.46.4	0.001152
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	7	7	AY.51	0.006364
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	7	7	AY.54	0.000667
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	7	7	B	0.000895
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	7	7	B.1.1.141	0.014085
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	7	7	B.1.1.305	0.027027
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	7	7	B.1.177.21	0.000535
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	7	7	B.1.428	0.007143
ORF1ab/nsp5A-B	105	R105del1	cGc	c-c	4	6	All	0.000001
ORF1ab/nsp5A-B	105	R105del1	cgC	cg-	1	6	All	0
ORF1ab/nsp5A-B	105	R105del1	Cgc	-gc	1	6	All	0
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	6	6	AY.3	0.00006
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	6	6	AY.32	0.003195
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	6	6	AY.36	0.000889
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	6	6	AY.46.2	0.003812
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	6	6	AY.78	0.009245
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	6	AY.99	0.005247
ORF1ab/nsp5A-B	105	R105R	CgC	AgG	1	6	AY.99	0.001049
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	6	6	B.1.1.174	0.02027
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	6	6	B.1.1.289	0.0125
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	6	6	B.1.1.322	0.052632
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	6	6	B.1.1.419	0.044444
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	6	6	B.1.1.7	0.000005
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	6	6	B.1.139	0.004399
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	6	6	B.1.177.42	0.005367
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	6	6	B.1.239	0.007326
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	6	6	B.1.328	0.1875
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	6	6	B.1.369	0.001711
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	6	6	B.1.470	0.008427
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	A.1	0.001409
ORF1ab/nsp5A-B	105	R105P	cGc	cCc	5	5	All	0.000001
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	AY.101	0.002452
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	AY.37	0.00158
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	AY.41	0.00147
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	AY.46.1	0.005133
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	5	5	B.1	0.000046
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	5	5	B.1	0.000046
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	B.1.1.284	0.000537
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	B.1.1.317	0.002058
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	B.1.1.37	0.000964
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	B.1.1.50	0.003394
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	B.1.1.523	0.007812
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	B.1.189	0.021459
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	B.1.192	0.046296
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	B.1.240	0.001078
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	B.1.241	0.004058
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	B.1.306	0.028571
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	C.8	0.022321
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	P.1.17	0.000809
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	5	5	P.1.7	0.001596
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	4	4		0.222222
ORF1ab/nsp5A-B	105	R105del	CGC	---	4	4		0.222222
ORF1ab/nsp5A-B	105	R105del2	CGc	--c	4	4	All	0.000001
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	AY.106	0.00134
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	AY.12	0.001264
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	AY.16	0.001519
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	AY.16.1	0.00188
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	AY.19	0.004561
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	4	4	AY.39	0.000099
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	AY.39.2	0.006163
ORF1ab/nsp5A-B	105	R105del	CGC	---	4	4	AY.4	0.000006
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	AY.4.2.1	0.000596
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	AY.55	0.00367
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	AY.65	0.002132
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	AY.91	0.002922
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	AY.92	0.001149
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	B.1.1.216	0.003562
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	B.1.1.63	0.001543
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	B.1.1.70	0.001364
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	B.1.177.33	0.006579
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	B.1.177.7	0.000659
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	B.1.177.75	0.004162
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	B.1.258.7	0.007648
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	B.1.36.8	0.004
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	B.1.426	0.004036
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	B.1.625	0.009412
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	B.1.627	0.008081
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	4	4	B.1.637	0.000292
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	4	4	P.1.13	0.003594
ORF1ab/nsp5A-B	105	R105L	cGC	cTA	1	3		0.055556
ORF1ab/nsp5A-B	105	R105L	CGC	TTA	1	3		0.055556
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	1	3		0.055556
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	A	0.001161
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	A.2.5.1	0.014423
ORF1ab/nsp5A-B	105	R105G	Cgc	Ggc	3	3	All	0.000001
ORF1ab/nsp5A-B	105	R105X	CgC	TgA	3	3	All	0.000001
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	3	3	AY.102	0.00008
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	AY.4.3	0.002525
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	3	3	AY.44	0.000018
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	AY.58	0.002722
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	AY.59	0.001589
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	AY.8	0.001818
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	AY.88	0.002653
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	3	3	B.1	0.000027
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.1.121	0.007282
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.1.157	0.00274
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.1.189	0.004539
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.1.311	0.001074
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.1.33	0.001263
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.1.337	0.010791
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.1.348	0.002389
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.1.384	0.071429
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.1.39	0.001529
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	3	3	B.1.110.3	0.002155
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.12	0.024
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.13	0.007126
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.160.14	0.006356
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.214.2	0.001799
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	3	3	B.1.221	0.000213
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	3	3	B.1.258.17	0.000312
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.332	0.01049
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	3	3	B.1.36	0.000438
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.362	0.004622
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.397	0.014563
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.399	0.005803
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	3	3	B.1.429	0.000071
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.530	0.021429
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.568	0.003333
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.577	0.002062
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.1.590	0.013636
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	B.36	0.230769
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	3	3	P.1.1	0.000953
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	2	2		0.111111
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	A.2.4	0.006734
ORF1ab/nsp5A-B	105	R105N	CGc	AAc	2	2	All	0
ORF1ab/nsp5A-B	105	R105K	CGC	AAG	2	2	All	0
ORF1ab/nsp5A-B	105	R105D	CGc	GAc	2	2	All	0
ORF1ab/nsp5A-B	105	R105E	CGC	GAG	2	2	All	0
ORF1ab/nsp5A-B	105	R105F	CGc	TTc	1	2	All	0
ORF1ab/nsp5A-B	105	R105F	CGC	TTT	1	2	All	0
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	AY.1	0.000791
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	AY.10	0.00106
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	2	2	AY.116	0.000574
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	AY.24	0.000862
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	2	2	AY.25	0.000012
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	2	2	AY.33	0.000134
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	AY.4.1	0.001475
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	AY.40	0.001929
ORF1ab/nsp5A-B	105	R105del	CGC	---	2	2	AY.43	0.000009
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	2	2	AY.46	0.000208
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	AY.64	0.00119
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	AY.7.1	0.000225
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	AY.71	0.00095
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	AY.82	0.002714
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	AY.84	0.000875
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	AY.89	0.009804
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	2	2	AY.89	0.009804
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	2	2	AY.9.1	0.000167
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	AY.94	0.000885
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	2	2	AY.99.2	0.000184
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	2	2	B	0.000256
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.1.145	0.074074
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.1.200	0.014925
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.1.236	0.013793
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.1.277	0.001517
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	2	2	B.1.1.279	0.002242
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	2	2	B.1.1.306	0.000877
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.1.344	0.021505
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.1.388	0.090909
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.1.416	0.00181
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.1.437	0.020833
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.1.464	0.002946
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.1.522	0.034483
ORF1ab/nsp5A-B	105	R105P	cGc	cCc	2	2	B.1.1.7	0.000002
ORF1ab/nsp5A-B	105	R105del1	cGc	c-c	2	2	B.1.1.7	0.000002
ORF1ab/nsp5A-B	105	R105del2	CGc	--c	2	2	B.1.1.7	0.000002
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.110.3	0.001437
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.147	0.001512
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.160.28	0.005848
ORF1ab/nsp5A-B	105	R105del	CGC	---	2	2	B.1.177	0.000026
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	2	2	B.1.177.12	0.000303
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.177.16	0.001329
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.177.35	0.001382
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.177.44	0.001038
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.177.45	0.000762
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.177.5	0.002484
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.177.62	0.002384
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.177.87	0.001456
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.206	0.001631
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.218	0.010309
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.258.22	0.005333
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.279	0.001027
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	2	2	B.1.3	0.005236
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.3	0.005236
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.346	0.002621
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.36.1	0.002281
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	2	2	B.1.36.1	0.002281
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.36.36	0.001204
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.389	0.002004
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.395	0.014085
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.438.1	0.000215
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	2	2	B.1.459	0.008163
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	2	2	B.1.466.2	0.000782
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.499	0.002101
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.516	0.003914
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.560	0.009259
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.571	0.019417
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.578	0.035714
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.596.1	0.018692
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	2	2	B.1.617.1	0.000258
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	2	2	B.1.617.2	0.000008
ORF1ab/nsp5A-B	105	R105del1	cGc	c-c	2	2	B.1.617.2	0.000008
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	2	2	B.1.617.2	0.000008
ORF1ab/nsp5A-B	105	R105del	CGC	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.628	0.000705
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.1.78	0.017094
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.3	0.001661
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.3.1	0.003317
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.35	0.015625
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	B.6.8	0.016529
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	N.5	0.003534
ORF1ab/nsp5A-B	105	R105del	CGC	---	2	2	P.1.1	0.000635
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	P.1.4	0.001953
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	P.7	0.008734
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	Q.4	0.00091
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	2	2	W.4	0.002703
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	1	1		0.055556
ORF1ab/nsp5A-B	105	R105X	CgC	TgA	1	1		0.055556
ORF1ab/nsp5A-B	105	R105F	CGc	TTc	1	1		0.055556
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	1	1	A	0.000387
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	A.2.5.3	0.010309
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	A.21	0.00277
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	A.27	0.001656
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	A.28	0.002646
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	A.5	0.001923
ORF1ab/nsp5A-B	105	R105Y	CGc	TAc	1	1	All	0
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AT.1	0.005128
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	AY.100	0.000046
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.107	0.000466
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.109	0.00074
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.116	0.000287
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	1	1	AY.117	0.000085
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	AY.119	0.000035
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	AY.121	0.000135
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.2	0.000356
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	1	1	AY.21	0.001898
ORF1ab/nsp5A-B	105	R105X	CgC	TgA	1	1	AY.23	0.00007
ORF1ab/nsp5A-B	105	R105del	CGC	---	1	1	AY.25	0.000006
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	1	1	AY.26	0.000028
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	AY.26	0.000028
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.28	0.00189
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	AY.29	0.000016
ORF1ab/nsp5A-B	105	R105del	CGC	---	1	1	AY.3	0.00001
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	1	1	AY.3	0.00001
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	AY.3.1	0.000085
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	1	1	AY.34	0.000097
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.35	0.000233
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	1	1	AY.4	0.000002
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	1	1	AY.4	0.000002
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.4.4	0.000409
ORF1ab/nsp5A-B	105	R105del	CGC	---	1	1	AY.4.5	0.000107
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	AY.42	0.00004
ORF1ab/nsp5A-B	105	R105P	cGc	cCc	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	105	R105N	CGc	AAc	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	105	R105K	CGC	AAG	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	105	R105D	CGc	GAc	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	105	R105E	CGC	GAG	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	105	R105D	CGc	GAc	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	105	R105K	CGC	AAG	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	105	R105N	CGc	AAc	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	105	R105E	CGC	GAG	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	AY.45	0.000122
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	1	1	AY.45	0.000122
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	AY.47	0.000031
ORF1ab/nsp5A-B	105	R105del	CGC	---	1	1	AY.47	0.000031
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	AY.5	0.000021
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.50	0.000799
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.56	0.001605
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.57	0.000656
ORF1ab/nsp5A-B	105	R105del	CGC	---	1	1	AY.62	0.000436
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.63	0.000387
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	1	1	AY.67	0.000464
ORF1ab/nsp5A-B	105	R105del1	Cgc	-gc	1	1	AY.67	0.000464
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	AY.7	0.000196
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.7.2	0.000559
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	AY.75	0.000056
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.77	0.001127
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.79	0.001211
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.81	0.001992
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	1	1	AY.84	0.000437
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.86	0.00083
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	AY.9.2	0.000037
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	1	1	AY.9.2	0.000037
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.90	0.000684
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.95	0.000761
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AY.96	0.002075
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	AY.98	0.000079
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	1	1	AY.99	0.001049
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	AZ.1	0.000867
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	1	1	B	0.000128
ORF1ab/nsp5A-B	105	R105P	cGc	cCc	1	1	B.1	0.000009
ORF1ab/nsp5A-B	105	R105G	Cgc	Ggc	1	1	B.1	0.000009
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.101	0.01
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	1	1	B.1.1.101	0.01
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.117	0.009709
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.13	0.035714
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.136	0.021277
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.148	0.008772
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.152	0.04
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.161	0.003534
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.198	0.001468
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	B.1.1.216	0.00089
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.228	0.003049
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	B.1.1.229	0.005747
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.241	0.00207
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.253	0.002506
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.279	0.001121
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.291	0.000742
ORF1ab/nsp5A-B	105	R105L	cGC	cTT	1	1	B.1.1.301	0.001179
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.302	0.002075
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.303	0.002762
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.309	0.005848
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.312	0.001912
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.328	0.016949
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.368	0.003086
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	B.1.1.387	0.058824
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	B.1.1.39	0.00051
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.397	0.002252
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.398	0.003226
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.400	0.05
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.402	0.011111
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	1	1	B.1.1.409	0.002833
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.413	0.006897
ORF1ab/nsp5A-B	105	R105del	CGC	---	1	1	B.1.1.420	0.001006
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.421	0.030303
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.448	0.002033
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.462	0.008621
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.526	0.003546
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.528	0.004808
ORF1ab/nsp5A-B	105	R105R	cgC	cgG	1	1	B.1.1.55	0.012987
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	105	R105F	CGC	TTT	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	105	R105G	Cgc	Ggc	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.71	0.006061
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.1.8	0.003584
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.111	0.001175
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.126	0.001276
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	1	1	B.1.145	0.052632
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.149	0.003425
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	1	1	B.1.160	0.000031
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	B.1.160	0.000031
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.160.10	0.008065
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.160.31	0.008065
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.160.32	0.004292
ORF1ab/nsp5A-B	105	R105H	cGC	cAT	1	1	B.1.160.8	0.001289
ORF1ab/nsp5A-B	105	R105del1	cgC	cg-	1	1	B.1.177	0.000013
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.177.10	0.000878
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.177.12	0.000152
ORF1ab/nsp5A-B	105	R105del2	CGc	--c	1	1	B.1.177.18	0.00116
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.177.4	0.000211
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	B.1.177.4	0.000211
ORF1ab/nsp5A-B	105	R105del	CGC	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.177.52	0.001757
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.177.73	0.000566
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.177.79	0.002342
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.177.8	0.000752
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.177.81	0.000189
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.190	0.01
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	1	1	B.1.2	0.000009
ORF1ab/nsp5A-B	105	R105del	CGC	---	1	1	B.1.2	0.000009
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.201	0.005682
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.210	0.002132
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.214	0.003663
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.214.3	0.007143
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.222	0.001692
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.232	0.000537
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	B.1.234	0.000132
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.236	0.002053
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	1	1	B.1.240	0.000216
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	B.1.247	0.014925
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.258.10	0.011364
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.258.14	0.00098
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.264	0.012346
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.280	0.007143
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.284	0.013158
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.315	0.006061
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.351.5	0.0006
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.36.18	0.00042
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.36.19	0.009259
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.36.22	0.001208
ORF1ab/nsp5A-B	105	R105Y	CGc	TAc	1	1	B.1.36.29	0.000517
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.36.31	0.001751
ORF1ab/nsp5A-B	105	R105R	cgC	cgA	1	1	B.1.36.34	0.021277
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.36.37	0.002778
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.36.7	0.004
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	1	1	B.1.362	0.001541
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.367	0.000792
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.371	0.001122
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.390	0.010638
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.401	0.008197
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.403	0.003268
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.413	0.004255
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.416.1	0.001563
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.420	0.010417
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	1	1	B.1.428	0.00102
ORF1ab/nsp5A-B	105	R105L	cGC	cTT	1	1	B.1.429	0.000024
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.441	0.009615
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.443	0.004673
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.456	0.003268
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.459	0.004082
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.462	0.007246
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	B.1.465	0.003802
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.469	0.00361
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.474	0.001901
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	B.1.505	0.004386
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.538	0.008065
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.540	0.009709
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.543	0.01
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.551	0.00129
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.556	0.007519
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.561	0.000397
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	B.1.582	0.000491
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.589	0.007576
ORF1ab/nsp5A-B	105	R105P	cGc	cCc	1	1	B.1.589	0.007576
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.595.1	0.005848
ORF1ab/nsp5A-B	105	R105G	Cgc	Ggc	1	1	B.1.596	0.000087
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	1	1	B.1.596	0.000087
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	B.1.597	0.00463
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.599	0.00365
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.606	0.006024
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.612	0.002653
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	105	R105del2	CGc	--c	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.622	0.012987
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	B.1.628	0.000352
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.631	0.003367
ORF1ab/nsp5A-B	105	R105S	Cgc	Agc	1	1	B.1.636	0.006711
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.84	0.020833
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.9	0.006173
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.9.1	0.032258
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.9.5	0.005682
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.1.91	0.002075
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.31	0.003731
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	1	1	B.31	0.003731
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	1	1	B.55	0.00295
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	B.6.6	0.000889
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	C.1.2	0.004255
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	C.11	0.010638
ORF1ab/nsp5A-B	105	R105X	CgC	TgA	1	1	C.16	0.00106
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	C.16	0.00106
ORF1ab/nsp5A-B	105	R105R	cgC	cgG	1	1	C.19	0.027027
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	C.38	0.008065
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	C.9	0.030303
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	D.2	0.000075
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	1	1	D.2	0.000075
ORF1ab/nsp5A-B	105	R105L	cGc	cTc	1	1	D.3	0.005917
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	N.3	0.005814
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	N.3	0.005814
ORF1ab/nsp5A-B	105	R105del	CGC	---	1	1	N.4	0.004255
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	P.1	0.000016
ORF1ab/nsp5A-B	105	R105C	Cgc	Tgc	1	1	P.1	0.000016
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	P.3	0.001595
ORF1ab/nsp5A-B	105	R105del	CGC	---	1	1	Q.2	0.000613
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	Q.7	0.001111
ORF1ab/nsp5A-B	105	R105H	cGc	cAc	1	1	R.1	0.00009
ORF1ab/nsp5A-B	105	R105R	cgC	cgT	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.