CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 105 | R105R | R3368R | syn | cgC | cgT | 25553 | 25441 | 0.995617 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105R | R3368R | syn | cgC | cgA | 25553 | 105 | 0.00410911 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105R | R3368R | syn | cgC | cgG | 25553 | 6 | 0.000234806 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105R | R3368R | syn | CgC | AgG | 25553 | 1 | 0.0000391343 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105H | R3368H | nonsyn | cGc | cAc | 397 | 396 | 0.997481 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105H | R3368H | nonsyn | cGC | cAT | 397 | 1 | 0.00251889 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105L | R3368L | nonsyn | cGc | cTc | 98 | 93 | 0.94898 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105L | R3368L | nonsyn | cGC | cTT | 98 | 3 | 0.0306122 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105L | R3368L | nonsyn | cGC | cTA | 98 | 1 | 0.0102041 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105L | R3368L | nonsyn | CGC | TTA | 98 | 1 | 0.0102041 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105S | R3368S | nonsyn | Cgc | Agc | 43 | 43 | 1 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105del | R3368del | del | CGC | --- | 35 | 35 | 1 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105C | R3368C | nonsyn | Cgc | Tgc | 24 | 24 | 1 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105del1 | R3368del1 | del | cGc | c-c | 6 | 4 | 0.666667 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105del1 | R3368del1 | del | Cgc | -gc | 6 | 1 | 0.166667 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105del1 | R3368del1 | del | cgC | cg- | 6 | 1 | 0.166667 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105P | R3368P | nonsyn | cGc | cCc | 5 | 5 | 1 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105del2 | R3368del2 | del | CGc | --c | 4 | 4 | 1 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105X | R3368X | nonsyn | CgC | TgA | 3 | 3 | 1 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105G | R3368G | nonsyn | Cgc | Ggc | 3 | 3 | 1 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105N | R3368N | nonsyn | CGc | AAc | 2 | 2 | 1 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105D | R3368D | nonsyn | CGc | GAc | 2 | 2 | 1 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105K | R3368K | nonsyn | CGC | AAG | 2 | 2 | 1 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105E | R3368E | nonsyn | CGC | GAG | 2 | 2 | 1 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105F | R3368F | nonsyn | CGC | TTT | 2 | 1 | 0.5 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105F | R3368F | nonsyn | CGc | TTc | 2 | 1 | 0.5 | 10367-10369 |
ORF1ab/nsp5A-B | 105 | R105Y | R3368Y | nonsyn | CGc | TAc | 1 | 1 | 1 | 10367-10369 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 25441 | 25553 | All | 0.004866 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 105 | 25553 | All | 0.00002 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgG | 6 | 25553 | All | 0.000001 |
ORF1ab/nsp5A-B | 105 | R105R | CgC | AgG | 1 | 25553 | All | 0 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4839 | 4893 | B.1.1.7 | 0.004332 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 53 | 4893 | B.1.1.7 | 0.000047 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgG | 1 | 4893 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2399 | 2399 | B.1.617.2 | 0.009033 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1423 | 1423 | B.1.351 | 0.042301 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1316 | 1318 | AY.4 | 0.002048 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 1 | 1318 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgG | 1 | 1318 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1238 | 1238 | AY.44 | 0.007535 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1205 | 1205 | AZ.2 | 0.989327 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1191 | 1191 | AY.102 | 0.031578 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 735 | 736 | AY.3 | 0.007311 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 1 | 736 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 620 | 621 | B.1.2 | 0.005459 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 1 | 621 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 563 | 563 | AY.39.1 | 0.022302 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 498 | 500 | AY.103 | 0.003092 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgG | 2 | 500 | AY.103 | 0.000012 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 471 | 471 | AY.100 | 0.021669 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 418 | 440 | B.1.1 | 0.007583 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 22 | 440 | B.1.1 | 0.000399 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 410 | 411 | B.1 | 0.003755 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 1 | 411 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 404 | 404 | B.1.429 | 0.009506 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 396 | 397 | All | 0.000076 |
ORF1ab/nsp5A-B | 105 | R105H | cGC | cAT | 1 | 397 | All | 0 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 378 | 379 | P.1 | 0.005955 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 1 | 379 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 361 | 361 | AY.43 | 0.001599 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 355 | 355 | AY.25 | 0.002135 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 340 | 340 | B.1.1.286 | 0.985507 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 263 | 263 | B.1.427 | 0.013281 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 252 | 252 | B.1.1.1 | 0.082326 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 228 | 228 | B.1.1.372 | 0.157025 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 186 | 191 | B.1.177 | 0.002449 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 5 | 191 | B.1.177 | 0.000066 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 178 | 180 | AY.39 | 0.004399 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 2 | 180 | AY.39 | 0.000049 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 151 | 151 | B.1.1.153 | 0.165389 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 142 | 143 | AY.4.2 | 0.00308 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 1 | 143 | AY.4.2 | 0.000022 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 128 | 128 | B.1.596 | 0.011154 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 124 | 124 | C.2.1 | 0.826667 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 121 | 121 | AZ.2.1 | 0.98374 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 108 | 109 | B.1.526 | 0.002538 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 1 | 109 | B.1.526 | 0.000024 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 107 | 107 | AY.117 | 0.009043 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 107 | 107 | B.1.621 | 0.009472 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 103 | 103 | AY.93 | 0.028127 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 93 | 98 | All | 0.000018 |
ORF1ab/nsp5A-B | 105 | R105L | cGC | cTT | 3 | 98 | All | 0.000001 |
ORF1ab/nsp5A-B | 105 | R105L | cGC | cTA | 1 | 98 | All | 0 |
ORF1ab/nsp5A-B | 105 | R105L | CGC | TTA | 1 | 98 | All | 0 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 94 | 94 | B.1.1.301 | 0.110849 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 91 | 91 | B.1.177.60 | 0.019878 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 91 | 91 | B.1.588 | 0.082803 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 88 | 88 | AY.5 | 0.001817 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 87 | 87 | AY.121 | 0.011773 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 79 | 79 | AY.33 | 0.005275 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 79 | 79 | B.1.406 | 0.478788 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 71 | 71 | B.1.177.80 | 0.135755 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 67 | 68 | D.2 | 0.005028 |
ORF1ab/nsp5A-B | 105 | R105L | cGC | cTT | 1 | 68 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 67 | 67 | AY.6 | 0.002756 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 65 | 65 | B.1.1.263 | 0.101246 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 65 | 65 | B.1.177.82 | 0.031026 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 63 | 63 | AY.46 | 0.006557 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 54 | 54 | B.1.258 | 0.003594 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 51 | 53 | B.1.243 | 0.003549 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 2 | 53 | B.1.243 | 0.000139 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 52 | 52 | B.1.36 | 0.007587 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 52 | 52 | B.1.517 | 0.022203 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 51 | 51 | B.1.160 | 0.001591 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 49 | 49 | AY.45 | 0.005963 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 49 | 49 | B.1.1.432 | 0.062025 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 48 | 48 | C.37 | 0.005571 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 47 | 47 | AY.120 | 0.001747 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 47 | 47 | B.1.1.214 | 0.002606 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 46 | 46 | B.1.609 | 0.022052 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 36 | 45 | AY.29 | 0.000568 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 9 | 45 | AY.29 | 0.000142 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 44 | 44 | AY.119 | 0.001554 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 44 | 44 | AY.4 | 0.000068 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 43 | 43 | All | 0.000008 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 43 | 43 | AY.25 | 0.000259 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 43 | 43 | Q.8 | 0.007091 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 41 | 41 | B.1.1.519 | 0.001628 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 40 | 40 | AY.29.1 | 0.00882 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 40 | 40 | P.1.14 | 0.001912 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 39 | 39 | AY.47 | 0.001213 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 38 | 38 | AY.20 | 0.001477 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 38 | 38 | AY.9.2 | 0.001396 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 38 | 38 | B.1.177.15 | 0.023975 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 37 | 37 | AY.46.6 | 0.002672 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 36 | 36 | AY.111 | 0.006593 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 36 | 36 | AY.49 | 0.115016 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 35 | 35 | All | 0.000007 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 33 | 33 | AY.87 | 0.027477 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 33 | 33 | B.1.617.2 | 0.000124 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 30 | 30 | AY.5.3 | 0.010121 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 30 | 30 | B.1.349 | 0.021444 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 30 | 30 | Q.1 | 0.00379 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 29 | 29 | AY.34 | 0.002812 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 29 | 29 | AY.98 | 0.002291 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 29 | 29 | B.1.1.358 | 1 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 28 | 28 | AY.26 | 0.000793 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 28 | 28 | B.1.177.65 | 0.018629 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 27 | 27 | B.1.311 | 0.007414 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 27 | 27 | B.1.595 | 0.007046 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 27 | 27 | C.2 | 0.435484 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 26 | 26 | B.1.177.77 | 0.018882 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 24 | 25 | A.23.1 | 0.016901 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 1 | 25 | A.23.1 | 0.000704 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 25 | 25 | AY.118 | 0.001566 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 25 | 25 | AY.34.1 | 0.012749 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 25 | 25 | B.1.1.28 | 0.007781 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 25 | 25 | B.1.1.318 | 0.007544 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 24 | 24 | All | 0.000005 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 24 | 24 | AY.99.2 | 0.002212 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 23 | 23 | B.1.234 | 0.003035 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 23 | 23 | B.1.400 | 0.009867 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 22 | 22 | B.1.1.306 | 0.009645 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 22 | 22 | B.1.177.86 | 0.004036 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 21 | 21 | AY.114 | 0.004853 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 21 | 21 | AY.75 | 0.001176 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 20 | 20 | B.1.221 | 0.001421 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 19 | 20 | B.1.258.17 | 0.001975 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 1 | 20 | B.1.258.17 | 0.000104 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 19 | 19 | AY.108 | 0.020948 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 19 | 19 | AY.23 | 0.001325 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 19 | 19 | B.1.293 | 0.2375 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 18 | 18 | AY.46.5 | 0.003571 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 18 | 18 | C.39 | 0.339623 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 17 | 17 | AY.110 | 0.001916 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 17 | 17 | AY.67 | 0.007892 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 17 | 17 | B.1 | 0.000156 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 17 | 17 | B.1.466.2 | 0.006651 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 17 | 17 | B.1.575 | 0.005158 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 17 | 17 | B.1.633 | 0.708333 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 17 | 17 | C.23 | 0.098837 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 16 | 16 | AY.4.5 | 0.00172 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 16 | 16 | B.1.146 | 0.067797 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 16 | 16 | B.1.525 | 0.001811 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 16 | 16 | B.1.617.1 | 0.002063 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 16 | 16 | B.1.623 | 0.008584 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 15 | 15 | AY.105 | 0.009646 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 15 | 15 | AY.14 | 0.00132 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 15 | 15 | AY.48 | 0.006977 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 15 | 15 | AY.75.1 | 0.002705 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 15 | 15 | AY.85 | 0.006408 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 15 | 15 | B.1.1.220 | 0.027881 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 15 | 15 | B.1.1.434 | 0.005228 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 15 | 15 | B.1.36.27 | 0.01145 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 14 | 14 | AY.120.1 | 0.004494 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 14 | 14 | AY.13 | 0.002254 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 14 | 14 | AY.9 | 0.000946 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 14 | 14 | B.1.177.35 | 0.009675 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 13 | 13 | AY.27 | 0.000841 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 13 | 13 | AY.61 | 0.001362 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 13 | 13 | B.1.1.207 | 0.015366 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 13 | 13 | B.1.564.1 | 0.020505 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 13 | 13 | P.1.15 | 0.00302 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 12 | 12 | AY.69 | 0.00224 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 11 | 11 | A.2.5 | 0.005489 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 11 | 11 | AY.113 | 0.001566 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 11 | 11 | AY.30 | 0.004353 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 11 | 11 | AY.42 | 0.000443 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 11 | 11 | AY.74 | 0.001272 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 11 | 11 | AY.9.1 | 0.000921 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 11 | 11 | B.1.1.25 | 0.006254 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 11 | 11 | B.1.177.32 | 0.014845 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 11 | 11 | P.1.12 | 0.005324 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 10 | 10 | AY.62 | 0.004357 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 10 | 10 | B.1.1.354 | 0.04386 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 10 | 10 | B.1.637 | 0.000731 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 10 | 10 | P.1.10 | 0.002695 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 9 | 9 | AY.5.4 | 0.00249 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 9 | 9 | B.1.1.369 | 0.004016 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 9 | 9 | R.1 | 0.00081 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 8 | 8 | AD.2 | 0.001752 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 8 | 8 | AY.3.1 | 0.000682 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 8 | 8 | AY.38 | 0.003994 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 8 | 8 | B.1.177.57 | 0.002248 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 8 | 8 | B.1.36.17 | 0.003953 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 8 | 8 | B.1.36.29 | 0.004139 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 8 | 8 | B.1.380 | 0.05298 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 8 | 8 | B.1.396 | 0.005646 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 8 | 8 | C.35 | 0.006192 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 8 | 8 | D.2 | 0.0006 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 8 | 8 | P.2 | 0.001493 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 7 | 7 | AY.23.1 | 0.002922 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 7 | 7 | AY.46.4 | 0.001152 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 7 | 7 | AY.51 | 0.006364 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 7 | 7 | B | 0.000895 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 7 | 7 | B.1.1.141 | 0.014085 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 7 | 7 | B.1.1.305 | 0.027027 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 7 | 7 | B.1.177.21 | 0.000535 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 7 | 7 | B.1.428 | 0.007143 |
ORF1ab/nsp5A-B | 105 | R105del1 | cGc | c-c | 4 | 6 | All | 0.000001 |
ORF1ab/nsp5A-B | 105 | R105del1 | cgC | cg- | 1 | 6 | All | 0 |
ORF1ab/nsp5A-B | 105 | R105del1 | Cgc | -gc | 1 | 6 | All | 0 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 6 | 6 | AY.32 | 0.003195 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 6 | 6 | AY.46.2 | 0.003812 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 6 | 6 | AY.78 | 0.009245 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 6 | AY.99 | 0.005247 |
ORF1ab/nsp5A-B | 105 | R105R | CgC | AgG | 1 | 6 | AY.99 | 0.001049 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 6 | 6 | B.1.1.174 | 0.02027 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 6 | 6 | B.1.1.289 | 0.0125 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 6 | 6 | B.1.1.322 | 0.052632 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 6 | 6 | B.1.1.419 | 0.044444 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 6 | 6 | B.1.139 | 0.004399 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 6 | 6 | B.1.177.42 | 0.005367 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 6 | 6 | B.1.239 | 0.007326 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 6 | 6 | B.1.328 | 0.1875 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 6 | 6 | B.1.369 | 0.001711 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 6 | 6 | B.1.470 | 0.008427 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | A.1 | 0.001409 |
ORF1ab/nsp5A-B | 105 | R105P | cGc | cCc | 5 | 5 | All | 0.000001 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | AY.101 | 0.002452 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | AY.37 | 0.00158 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | AY.41 | 0.00147 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | AY.46.1 | 0.005133 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | B.1.1.50 | 0.003394 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | B.1.1.523 | 0.007812 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | B.1.189 | 0.021459 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | B.1.192 | 0.046296 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | B.1.241 | 0.004058 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | B.1.306 | 0.028571 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | C.8 | 0.022321 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 5 | 5 | P.1.7 | 0.001596 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 4 | 4 | 0.222222 | |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp5A-B | 105 | R105del2 | CGc | --c | 4 | 4 | All | 0.000001 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | AY.12 | 0.001264 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | AY.19 | 0.004561 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | AY.39.2 | 0.006163 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | AY.55 | 0.00367 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | B.1.1.63 | 0.001543 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | B.1.177.33 | 0.006579 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | B.1.177.75 | 0.004162 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | B.1.258.7 | 0.007648 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | B.1.426 | 0.004036 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | B.1.625 | 0.009412 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | B.1.627 | 0.008081 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 4 | 4 | P.1.13 | 0.003594 |
ORF1ab/nsp5A-B | 105 | R105L | cGC | cTA | 1 | 3 | 0.055556 | |
ORF1ab/nsp5A-B | 105 | R105L | CGC | TTA | 1 | 3 | 0.055556 | |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 1 | 3 | 0.055556 | |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | A | 0.001161 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | A.2.5.1 | 0.014423 |
ORF1ab/nsp5A-B | 105 | R105G | Cgc | Ggc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp5A-B | 105 | R105X | CgC | TgA | 3 | 3 | All | 0.000001 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | AY.4.3 | 0.002525 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.1.121 | 0.007282 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.1.157 | 0.00274 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.1.189 | 0.004539 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.1.337 | 0.010791 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.1.384 | 0.071429 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.12 | 0.024 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.13 | 0.007126 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.160.14 | 0.006356 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.332 | 0.01049 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.362 | 0.004622 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.397 | 0.014563 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.399 | 0.005803 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.530 | 0.021429 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.568 | 0.003333 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.1.590 | 0.013636 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | B.36 | 0.230769 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | A.2.4 | 0.006734 |
ORF1ab/nsp5A-B | 105 | R105N | CGc | AAc | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 105 | R105K | CGC | AAG | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 105 | R105D | CGc | GAc | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 105 | R105E | CGC | GAG | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 105 | R105F | CGc | TTc | 1 | 2 | All | 0 |
ORF1ab/nsp5A-B | 105 | R105F | CGC | TTT | 1 | 2 | All | 0 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | AY.89 | 0.009804 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 2 | 2 | AY.89 | 0.009804 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 2 | 2 | B | 0.000256 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.1.145 | 0.074074 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.1.200 | 0.014925 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.1.236 | 0.013793 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 2 | 2 | B.1.1.279 | 0.002242 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.1.344 | 0.021505 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.1.388 | 0.090909 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.1.437 | 0.020833 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.1.522 | 0.034483 |
ORF1ab/nsp5A-B | 105 | R105P | cGc | cCc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 105 | R105del1 | cGc | c-c | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 105 | R105del2 | CGc | --c | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.160.28 | 0.005848 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.177.45 | 0.000762 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.177.5 | 0.002484 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.218 | 0.010309 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.258.22 | 0.005333 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 2 | 2 | B.1.3 | 0.005236 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.3 | 0.005236 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.346 | 0.002621 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.36.36 | 0.001204 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.395 | 0.014085 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.516 | 0.003914 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.560 | 0.009259 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.571 | 0.019417 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.578 | 0.035714 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.596.1 | 0.018692 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp5A-B | 105 | R105del1 | cGc | c-c | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.1.78 | 0.017094 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.3.1 | 0.003317 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.35 | 0.015625 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | B.6.8 | 0.016529 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | P.7 | 0.008734 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 2 | 2 | W.4 | 0.002703 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 105 | R105X | CgC | TgA | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 105 | R105F | CGc | TTc | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp5A-B | 105 | R105Y | CGc | TAc | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp5A-B | 105 | R105X | CgC | TgA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 105 | R105P | cGc | cCc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 105 | R105N | CGc | AAc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 105 | R105K | CGC | AAG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 105 | R105D | CGc | GAc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 105 | R105E | CGC | GAG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 105 | R105D | CGc | GAc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 105 | R105K | CGC | AAG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 105 | R105N | CGc | AAc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 105 | R105E | CGC | GAG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp5A-B | 105 | R105del1 | Cgc | -gc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 105 | R105P | cGc | cCc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 105 | R105G | Cgc | Ggc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.136 | 0.021277 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.152 | 0.04 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp5A-B | 105 | R105L | cGC | cTT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.328 | 0.016949 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | B.1.1.387 | 0.058824 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.400 | 0.05 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.421 | 0.030303 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgG | 1 | 1 | B.1.1.55 | 0.012987 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 105 | R105F | CGC | TTT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 105 | R105G | Cgc | Ggc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 1 | 1 | B.1.145 | 0.052632 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.160.10 | 0.008065 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp5A-B | 105 | R105H | cGC | cAT | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp5A-B | 105 | R105del1 | cgC | cg- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp5A-B | 105 | R105del2 | CGc | --c | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.190 | 0.01 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.201 | 0.005682 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.315 | 0.006061 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp5A-B | 105 | R105Y | CGc | TAc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgA | 1 | 1 | B.1.36.34 | 0.021277 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp5A-B | 105 | R105L | cGC | cTT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.556 | 0.007519 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp5A-B | 105 | R105P | cGc | cCc | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp5A-B | 105 | R105G | Cgc | Ggc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 105 | R105del2 | CGc | --c | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.622 | 0.012987 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp5A-B | 105 | R105S | Cgc | Agc | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.84 | 0.020833 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.9.1 | 0.032258 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp5A-B | 105 | R105X | CgC | TgA | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgG | 1 | 1 | C.19 | 0.027027 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | C.38 | 0.008065 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | C.9 | 0.030303 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 105 | R105L | cGc | cTc | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 105 | R105C | Cgc | Tgc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp5A-B | 105 | R105del | CGC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp5A-B | 105 | R105H | cGc | cAc | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp5A-B | 105 | R105R | cgC | cgT | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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