CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 102

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B102K102KK3365KsynaaGaaA721721110358-10360
ORF1ab/nsp5A-B102K102RK3365RnonsynaAgaGg618618110358-10360
ORF1ab/nsp5A-B102K102NK3365NnonsynaaGaaT51450.88235310358-10360
ORF1ab/nsp5A-B102K102NK3365NnonsynaaGaaC5160.11764710358-10360
ORF1ab/nsp5A-B102K102delK3365deldelAAG---4343110358-10360
ORF1ab/nsp5A-B102K102EK3365EnonsynAagGag33110358-10360
ORF1ab/nsp5A-B102K102XK3365XnonsynAagTag22110358-10360
ORF1ab/nsp5A-B102K102MK3365MnonsynaAgaTg22110358-10360
ORF1ab/nsp5A-B102K102TK3365TnonsynaAgaCg22110358-10360
ORF1ab/nsp5A-B102K102SK3365SnonsynAAgTCg210.510358-10360
ORF1ab/nsp5A-B102K102SK3365SnonsynaAGaGT210.510358-10360
ORF1ab/nsp5A-B102K102del1K3365del1delAag-ag210.510358-10360
ORF1ab/nsp5A-B102K102del1K3365del1delaAGaG-210.510358-10360
ORF1ab/nsp5A-B102K102CK3365CnonsynAAGTGT11110358-10360
ORF1ab/nsp5A-B102K102del2K3365del2delaAGa--11110358-10360
ORF1ab/nsp5A-B102K102VK3365VnonsynAAgGTg11110358-10360
ORF1ab/nsp5A-B102K102LK3365LnonsynAAgTTg11110358-10360
ORF1ab/nsp5A-B102K102YK3365YnonsynAaGTaC11110358-10360

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B102K102KaaGaaA721721All0.000138
ORF1ab/nsp5A-B102K102RaAgaGg618618All0.000118
ORF1ab/nsp5A-B102K102RaAgaGg518518B.1.1.70.000464
ORF1ab/nsp5A-B102K102KaaGaaA260260B.1.1.3291
ORF1ab/nsp5A-B102K102KaaGaaA156156B.1.1.3890.945455
ORF1ab/nsp5A-B102K102KaaGaaA8080B.1.10.001451
ORF1ab/nsp5A-B102K102KaaGaaA5959B.1.1.3281
ORF1ab/nsp5A-B102K102NaaGaaT4551All0.000009
ORF1ab/nsp5A-B102K102NaaGaaC651All0.000001
ORF1ab/nsp5A-B102K102delAAG---4343All0.000008
ORF1ab/nsp5A-B102K102KaaGaaA4343B.1.1.70.000038
ORF1ab/nsp5A-B102K102KaaGaaA4040B.10.000366
ORF1ab/nsp5A-B102K102RaAgaGg1818AY.260.00051
ORF1ab/nsp5A-B102K102RaAgaGg1414B.1.619.10.00898
ORF1ab/nsp5A-B102K102NaaGaaT1313B.1.1770.000171
ORF1ab/nsp5A-B102K102KaaGaaA1313B.1.617.20.000049
ORF1ab/nsp5A-B102K102delAAG---1212B.1.1.70.000011
ORF1ab/nsp5A-B102K102RaAgaGg1111B.1.3510.000327
ORF1ab/nsp5A-B102K102RaAgaGg99AY.440.000055
ORF1ab/nsp5A-B102K102RaAgaGg77P.10.00011
ORF1ab/nsp5A-B102K102RaAgaGg77Q.80.001154
ORF1ab/nsp5A-B102K102delAAG---66AY.250.000036
ORF1ab/nsp5A-B102K102NaaGaaT66AY.40.000009
ORF1ab/nsp5A-B102K102KaaGaaA66B.1.1.3110.002149
ORF1ab/nsp5A-B102K102KaaGaaA66B.1.1.4320.007595
ORF1ab/nsp5A-B102K102RaAgaGg66B.1.617.20.000023
ORF1ab/nsp5A-B102K102delAAG---55AY.40.000008
ORF1ab/nsp5A-B102K102KaaGaaA55B.1.5260.000118
ORF1ab/nsp5A-B102K102NaaGaaT240.111111
ORF1ab/nsp5A-B102K102NaaGaaC240.111111
ORF1ab/nsp5A-B102K102KaaGaaA44AY.430.000018
ORF1ab/nsp5A-B102K102NaaGaaT44B.1.1.70.000004
ORF1ab/nsp5A-B102K102NaaGaaT44B.1.617.20.000015
ORF1ab/nsp5A-B102K102NaaGaaC44C.360.003643
ORF1ab/nsp5A-B102K102KaaGaaA44P.10.000063
ORF1ab/nsp5A-B102K102EAagGag33All0.000001
ORF1ab/nsp5A-B102K102NaaGaaT33AY.1020.00008
ORF1ab/nsp5A-B102K102KaaGaaA33AY.440.000018
ORF1ab/nsp5A-B102K102KaaGaaA33B.1.2580.0002
ORF1ab/nsp5A-B102K102RaAgaGg33B.1.2580.0002
ORF1ab/nsp5A-B102K102KaaGaaA33B.1.3510.000089
ORF1ab/nsp5A-B102K102KaaGaaA220.111111
ORF1ab/nsp5A-B102K102delAAG---220.111111
ORF1ab/nsp5A-B102K102XAagTag22All0
ORF1ab/nsp5A-B102K102TaAgaCg22All0
ORF1ab/nsp5A-B102K102MaAgaTg22All0
ORF1ab/nsp5A-B102K102SAAgTCg12All0
ORF1ab/nsp5A-B102K102del1Aag-ag12All0
ORF1ab/nsp5A-B102K102del1aAGaG-12All0
ORF1ab/nsp5A-B102K102SaAGaGT12All0
ORF1ab/nsp5A-B102K102RaAgaGg22AY.1190.000071
ORF1ab/nsp5A-B102K102RaAgaGg22AY.30.00002
ORF1ab/nsp5A-B102K102KaaGaaA22AY.40.000003
ORF1ab/nsp5A-B102K102delAAG---22AY.430.000009
ORF1ab/nsp5A-B102K102RaAgaGg22AY.430.000009
ORF1ab/nsp5A-B102K102NaaGaaT22AY.7.10.000225
ORF1ab/nsp5A-B102K102KaaGaaA22AY.9.10.000167
ORF1ab/nsp5A-B102K102RaAgaGg22B.1.10.000036
ORF1ab/nsp5A-B102K102RaAgaGg22B.1.1770.000026
ORF1ab/nsp5A-B102K102KaaGaaA22B.1.20.000018
ORF1ab/nsp5A-B102K102KaaGaaA22B.1.2430.000139
ORF1ab/nsp5A-B102K102KaaGaaA22B.1.438.10.000215
ORF1ab/nsp5A-B102K102KaaGaaA22B.1.6090.000959
ORF1ab/nsp5A-B102K102delAAG---22B.1.617.20.000008
ORF1ab/nsp5A-B102K102KaaGaaA22B.1.621.10.001012
ORF1ab/nsp5A-B102K102RaAgaGg22Q.10.000253
ORF1ab/nsp5A-B102K102KaaGaaA11A0.000387
ORF1ab/nsp5A-B102K102YAaGTaC11All0
ORF1ab/nsp5A-B102K102VAAgGTg11All0
ORF1ab/nsp5A-B102K102CAAGTGT11All0
ORF1ab/nsp5A-B102K102del2aAGa--11All0
ORF1ab/nsp5A-B102K102LAAgTTg11All0
ORF1ab/nsp5A-B102K102NaaGaaT11AY.1000.000046
ORF1ab/nsp5A-B102K102KaaGaaA11AY.1020.000027
ORF1ab/nsp5A-B102K102KaaGaaA11AY.1030.000006
ORF1ab/nsp5A-B102K102NaaGaaT11AY.1200.000037
ORF1ab/nsp5A-B102K102LAAgTTg11AY.230.00007
ORF1ab/nsp5A-B102K102KaaGaaA11AY.260.000028
ORF1ab/nsp5A-B102K102delAAG---11AY.30.00001
ORF1ab/nsp5A-B102K102RaAgaGg11AY.370.000316
ORF1ab/nsp5A-B102K102RaAgaGg11AY.390.000025
ORF1ab/nsp5A-B102K102RaAgaGg11AY.40.000002
ORF1ab/nsp5A-B102K102VAAgGTg11AY.40.000002
ORF1ab/nsp5A-B102K102RaAgaGg11AY.4.20.000022
ORF1ab/nsp5A-B102K102delAAG---11AY.4.50.000107
ORF1ab/nsp5A-B102K102RaAgaGg11AY.4.50.000107
ORF1ab/nsp5A-B102K102NaaGaaT11AY.430.000004
ORF1ab/nsp5A-B102K102del1Aag-ag11AY.440.000006
ORF1ab/nsp5A-B102K102delAAG---11AY.470.000031
ORF1ab/nsp5A-B102K102delAAG---11AY.620.000436
ORF1ab/nsp5A-B102K102delAAG---11AY.670.000464
ORF1ab/nsp5A-B102K102KaaGaaA11AY.690.000187
ORF1ab/nsp5A-B102K102KaaGaaA11AY.730.000665
ORF1ab/nsp5A-B102K102RaAgaGg11AY.750.000056
ORF1ab/nsp5A-B102K102TaAgaCg11AY.9.10.000084
ORF1ab/nsp5A-B102K102delAAG---11B.10.000009
ORF1ab/nsp5A-B102K102RaAgaGg11B.10.000009
ORF1ab/nsp5A-B102K102NaaGaaT11B.1.10.000018
ORF1ab/nsp5A-B102K102KaaGaaA11B.1.1.2140.000055
ORF1ab/nsp5A-B102K102EAagGag11B.1.1.250.000569
ORF1ab/nsp5A-B102K102KaaGaaA11B.1.1.2770.000759
ORF1ab/nsp5A-B102K102KaaGaaA11B.1.1.3060.000438
ORF1ab/nsp5A-B102K102RaAgaGg11B.1.1.3720.000689
ORF1ab/nsp5A-B102K102RaAgaGg11B.1.1.390.00051
ORF1ab/nsp5A-B102K102delAAG---11B.1.1.4200.001006
ORF1ab/nsp5A-B102K102RaAgaGg11B.1.1.5230.001563
ORF1ab/nsp5A-B102K102MaAgaTg11B.1.1.70.000001
ORF1ab/nsp5A-B102K102XAagTag11B.1.1.70.000001
ORF1ab/nsp5A-B102K102KaaGaaA11B.1.1.860.035714
ORF1ab/nsp5A-B102K102TaAgaCg11B.1.1600.000031
ORF1ab/nsp5A-B102K102EAagGag11B.1.1770.000013
ORF1ab/nsp5A-B102K102delAAG---11B.1.1770.000013
ORF1ab/nsp5A-B102K102KaaGaaA11B.1.1770.000013
ORF1ab/nsp5A-B102K102SaAGaGT11B.1.1770.000013
ORF1ab/nsp5A-B102K102delAAG---11B.1.177.180.00116
ORF1ab/nsp5A-B102K102KaaGaaA11B.1.177.180.00116
ORF1ab/nsp5A-B102K102delAAG---11B.1.177.40.000211
ORF1ab/nsp5A-B102K102NaaGaaT11B.1.177.570.000281
ORF1ab/nsp5A-B102K102EAagGag11B.1.177.630.002703
ORF1ab/nsp5A-B102K102NaaGaaT11B.1.177.870.000728
ORF1ab/nsp5A-B102K102delAAG---11B.1.20.000009
ORF1ab/nsp5A-B102K102NaaGaaT11B.1.2360.002053
ORF1ab/nsp5A-B102K102XAagTag11B.1.2430.00007
ORF1ab/nsp5A-B102K102NaaGaaT11B.1.258.170.000104
ORF1ab/nsp5A-B102K102MaAgaTg11B.1.3110.000275
ORF1ab/nsp5A-B102K102KaaGaaA11B.1.3950.007042
ORF1ab/nsp5A-B102K102KaaGaaA11B.1.4000.000429
ORF1ab/nsp5A-B102K102KaaGaaA11B.1.4270.00005
ORF1ab/nsp5A-B102K102KaaGaaA11B.1.4290.000024
ORF1ab/nsp5A-B102K102NaaGaaT11B.1.4730.019231
ORF1ab/nsp5A-B102K102NaaGaaT11B.1.5600.00463
ORF1ab/nsp5A-B102K102KaaGaaA11B.1.5760.000907
ORF1ab/nsp5A-B102K102del1aAGaG-11B.1.617.20.000004
ORF1ab/nsp5A-B102K102YAaGTaC11B.1.617.20.000004
ORF1ab/nsp5A-B102K102RaAgaGg11B.1.6280.000352
ORF1ab/nsp5A-B102K102RaAgaGg11B.1.6370.000073
ORF1ab/nsp5A-B102K102CAAGTGT11C.160.00106
ORF1ab/nsp5A-B102K102KaaGaaA11C.370.000116
ORF1ab/nsp5A-B102K102RaAgaGg11C.370.000116
ORF1ab/nsp5A-B102K102delAAG---11N.40.004255
ORF1ab/nsp5A-B102K102del2aAGa--11P.1.10.000318
ORF1ab/nsp5A-B102K102delAAG---11P.1.10.000318
ORF1ab/nsp5A-B102K102SAAgTCg11P.1.170.000162
ORF1ab/nsp5A-B102K102KaaGaaA11P.20.000187
ORF1ab/nsp5A-B102K102delAAG---11Q.20.000613
ORF1ab/nsp5A-B102K102KaaGaaA11Q.80.000165
ORF1ab/nsp5A-B102K102NaaGaaT11Q.80.000165