CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 10 | S10S | S3273S | syn | tcT | tcA | 7012 | 5603 | 0.799059 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10S | S3273S | syn | tcT | tcC | 7012 | 903 | 0.128779 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10S | S3273S | syn | tcT | tcG | 7012 | 505 | 0.0720194 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10S | S3273S | syn | TCt | AGt | 7012 | 1 | 0.000142613 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10A | S3273A | nonsyn | Tct | Gct | 145 | 145 | 1 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10del | S3273del | del | TCT | --- | 61 | 61 | 1 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10F | S3273F | nonsyn | tCt | tTt | 59 | 57 | 0.966102 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10F | S3273F | nonsyn | tCT | tTC | 59 | 2 | 0.0338983 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10T | S3273T | nonsyn | Tct | Act | 28 | 25 | 0.892857 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10T | S3273T | nonsyn | TcT | AcC | 28 | 2 | 0.0714286 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10T | S3273T | nonsyn | TcT | AcA | 28 | 1 | 0.0357143 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10P | S3273P | nonsyn | Tct | Cct | 15 | 15 | 1 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10Y | S3273Y | nonsyn | tCt | tAt | 6 | 6 | 1 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10I | S3273I | nonsyn | TCt | ATt | 6 | 3 | 0.5 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10I | S3273I | nonsyn | TCT | ATC | 6 | 2 | 0.333333 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10I | S3273I | nonsyn | TCT | ATA | 6 | 1 | 0.166667 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10del1 | S3273del1 | del | tCt | t-t | 3 | 3 | 1 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10C | S3273C | nonsyn | tCt | tGt | 3 | 3 | 1 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10D | S3273D | nonsyn | TCt | GAt | 2 | 2 | 1 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10L | S3273L | nonsyn | tCT | tTA | 2 | 1 | 0.5 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10L | S3273L | nonsyn | TCT | CTG | 2 | 1 | 0.5 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10del2 | S3273del2 | del | TCt | --t | 1 | 1 | 1 | 10082-10084 |
ORF1ab/nsp5A-B | 10 | S10H | S3273H | nonsyn | TCt | CAt | 1 | 1 | 1 | 10082-10084 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 5603 | 7012 | All | 0.001072 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 903 | 7012 | All | 0.000173 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 505 | 7012 | All | 0.000097 |
ORF1ab/nsp5A-B | 10 | S10S | TCt | AGt | 1 | 7012 | All | 0 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 5502 | 5544 | AY.4 | 0.008563 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 42 | 5544 | AY.4 | 0.000065 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 430 | 437 | B.1.1 | 0.007801 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 6 | 437 | B.1.1 | 0.000109 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 1 | 437 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 359 | 359 | B.1.564.1 | 0.566246 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 270 | 319 | B.1.1.7 | 0.000242 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 47 | 319 | B.1.1.7 | 0.000042 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 2 | 319 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 145 | 145 | All | 0.000028 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 61 | 61 | All | 0.000012 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 57 | 59 | All | 0.000011 |
ORF1ab/nsp5A-B | 10 | S10F | tCT | tTC | 2 | 59 | All | 0 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 49 | 51 | B.1.1.519 | 0.001946 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 2 | 51 | B.1.1.519 | 0.000079 |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 25 | 28 | All | 0.000005 |
ORF1ab/nsp5A-B | 10 | S10T | TcT | AcC | 2 | 28 | All | 0 |
ORF1ab/nsp5A-B | 10 | S10T | TcT | AcA | 1 | 28 | All | 0 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 26 | 26 | AY.44 | 0.000158 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 14 | 26 | AY.44 | 0.000085 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 11 | 26 | AY.44 | 0.000067 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 1 | 26 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 25 | 25 | B.1.1.7 | 0.000022 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 9 | 17 | AY.43 | 0.00004 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 8 | 17 | AY.43 | 0.000035 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 17 | 17 | B.1.1.319 | 0.298246 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 13 | 17 | B.1.617.2 | 0.000049 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 4 | 17 | B.1.617.2 | 0.000015 |
ORF1ab/nsp5A-B | 10 | S10P | Tct | Cct | 15 | 15 | All | 0.000003 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 15 | 15 | B.1.1 | 0.000272 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 14 | 14 | B.1.429 | 0.000329 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 11 | 12 | AY.26 | 0.000311 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 1 | 12 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 5 | 11 | B.1.258 | 0.000333 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 3 | 11 | B.1.258 | 0.0002 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 2 | 11 | B.1.258 | 0.000133 |
ORF1ab/nsp5A-B | 10 | S10S | TCt | AGt | 1 | 11 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 9 | 10 | AY.25 | 0.000054 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 1 | 10 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 10 | 10 | B.1.427 | 0.000505 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 9 | 9 | AY.113 | 0.001282 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 9 | 9 | B.1.1.269 | 0.012179 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp5A-B | 10 | S10Y | tCt | tAt | 6 | 6 | All | 0.000001 |
ORF1ab/nsp5A-B | 10 | S10I | TCt | ATt | 3 | 6 | All | 0.000001 |
ORF1ab/nsp5A-B | 10 | S10I | TCT | ATC | 2 | 6 | All | 0 |
ORF1ab/nsp5A-B | 10 | S10I | TCT | ATA | 1 | 6 | All | 0 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 4 | 6 | B.1 | 0.000037 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 2 | 6 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 4 | 6 | P.1 | 0.000063 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 2 | 6 | P.1 | 0.000032 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 5 | 5 | B.1.1.194 | 0.024752 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp5A-B | 10 | S10P | Tct | Cct | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 3 | 4 | B.1.221 | 0.000213 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 4 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 2 | 3 | 0.111111 | |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 2 | 3 | 0.111111 | |
ORF1ab/nsp5A-B | 10 | S10F | tCT | tTC | 1 | 3 | 0.055556 | |
ORF1ab/nsp5A-B | 10 | S10T | TcT | AcC | 1 | 3 | 0.055556 | |
ORF1ab/nsp5A-B | 10 | S10del1 | tCt | t-t | 3 | 3 | All | 0.000001 |
ORF1ab/nsp5A-B | 10 | S10C | tCt | tGt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp5A-B | 10 | S10P | Tct | Cct | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 3 | 3 | B.1.1.277 | 0.002276 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 2 | 3 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 1 | 3 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 3 | 3 | B.1.210 | 0.006397 |
ORF1ab/nsp5A-B | 10 | S10I | TCT | ATA | 1 | 3 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 1 | 3 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 10 | S10T | TcT | AcA | 1 | 3 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 10 | S10I | TCt | ATt | 1 | 3 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 10 | S10I | TCT | ATC | 1 | 3 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 10 | S10T | TcT | AcC | 1 | 3 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp5A-B | 10 | S10I | TCt | ATt | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 10 | S10I | TCT | ATC | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 2 | 2 | A | 0.000774 |
ORF1ab/nsp5A-B | 10 | S10D | TCt | GAt | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 10 | S10L | TCT | CTG | 1 | 2 | All | 0 |
ORF1ab/nsp5A-B | 10 | S10L | tCT | tTA | 1 | 2 | All | 0 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 2 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 1 | 2 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp5A-B | 10 | S10Y | tCt | tAt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp5A-B | 10 | S10Y | tCt | tAt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 10 | S10C | tCt | tGt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 2 | 2 | B.1.1.157 | 0.001826 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 2 | 2 | B.1.1.298 | 0.001724 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 2 | 2 | B.1.1.430 | 0.083333 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp5A-B | 10 | S10P | Tct | Cct | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 10 | S10F | tCT | tTC | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 1 | 2 | B.1.243 | 0.00007 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 2 | B.1.243 | 0.00007 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp5A-B | 10 | S10P | Tct | Cct | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 1 | 2 | P.1.17 | 0.000162 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 1 | 2 | P.1.17 | 0.000162 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 10 | S10Y | tCt | tAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 10 | S10del2 | TCt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 10 | S10H | TCt | CAt | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 10 | S10P | Tct | Cct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 10 | S10P | Tct | Cct | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp5A-B | 10 | S10L | TCT | CTG | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 10 | S10del1 | tCt | t-t | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 10 | S10D | TCt | GAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 10 | S10del1 | tCt | t-t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 10 | S10del2 | TCt | --t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 10 | S10H | TCt | CAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 10 | S10I | TCt | ATt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 10 | S10D | TCt | GAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 1 | 1 | B.1.1.145 | 0.037037 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 1 | 1 | B.1.1.299 | 0.012195 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 1 | 1 | B.1.1.388 | 0.045455 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 1 | 1 | B.1.1.407 | 0.041667 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 10 | S10L | tCT | tTA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 10 | S10T | Tct | Act | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp5A-B | 10 | S10C | tCt | tGt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcG | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp5A-B | 10 | S10del1 | tCt | t-t | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 10 | S10Y | tCt | tAt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp5A-B | 10 | S10P | Tct | Cct | 1 | 1 | B.46 | 0.020833 |
ORF1ab/nsp5A-B | 10 | S10P | Tct | Cct | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 10 | S10F | tCt | tTt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp5A-B | 10 | S10A | Tct | Gct | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp5A-B | 10 | S10del | TCT | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcC | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp5A-B | 10 | S10S | tcT | tcA | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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