CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 397 | Y397Y | Y3160Y | syn | taC | taT | 8615 | 8615 | 1 | 9743-9745 |
Details of the mutation Y397Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 8615 | 8615 | All | 0.001648 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 3535 | 3535 | B.1.177.57 | 0.993257 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1646 | 1646 | B.1.177.54 | 0.998181 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1483 | 1483 | B.1.177.56 | 0.989987 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 427 | 427 | B.1.177.55 | 0.995338 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 403 | 403 | B.1.1.7 | 0.000361 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 120 | 120 | B.1.617.2 | 0.000452 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 115 | 115 | P.1 | 0.001812 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 96 | 96 | AY.43 | 0.000425 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 81 | 81 | AY.4 | 0.000126 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 58 | 58 | B.1.177 | 0.000764 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 58 | 58 | C.4 | 0.58 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 46 | 46 | B.1.1.519 | 0.001827 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 44 | 44 | V.1 | 1 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 39 | 39 | B.1 | 0.000357 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 36 | 36 | AY.116.1 | 0.011211 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 33 | 33 | B.1.585 | 0.916667 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 30 | 30 | V.2 | 0.967742 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 26 | 26 | B.1.1.317 | 0.010704 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 21 | 21 | AY.5.4 | 0.005811 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 19 | 19 | AY.34.1 | 0.009689 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 19 | 19 | B.1.2 | 0.000167 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 16 | 16 | B.1.628 | 0.005638 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 14 | 14 | B.1.177.18 | 0.016241 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 12 | 12 | B.1.637 | 0.000877 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 8 | 8 | B.1.160.16 | 0.007435 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 7 | 7 | AY.5.3 | 0.002362 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 6 | 6 | B.1.577 | 0.004124 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | AY.37 | 0.001264 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | A.19 | 0.018868 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.1.190 | 0.1 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.177.11 | 0.003396 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.36.26 | 0.005714 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.425 | 0.005988 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.426 | 0.002018 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp4 | 397 | Y397Y | taC | taT | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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