CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 335 | Y335Y | Y3098Y | syn | taC | taT | 57293 | 57293 | 1 | 9557-9559 |
Details of the mutation Y335Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 57293 | 57293 | All | 0.010958 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 25243 | 25243 | B.1.617.2 | 0.09505 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 21165 | 21165 | AY.100 | 0.97373 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1937 | 1937 | AY.101 | 0.949975 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1523 | 1523 | B.1.1.7 | 0.001363 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 826 | 826 | AY.4 | 0.001286 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 482 | 482 | AY.44 | 0.002934 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 363 | 363 | AY.102 | 0.009625 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 287 | 287 | AY.117 | 0.024256 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 263 | 263 | AY.43 | 0.001165 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 258 | 258 | AY.25 | 0.001552 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 258 | 258 | AY.39 | 0.006376 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 233 | 233 | AY.103 | 0.001447 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 174 | 174 | AY.5 | 0.003593 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 163 | 163 | AY.37 | 0.051517 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 153 | 153 | AY.98 | 0.012086 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 142 | 142 | P.1 | 0.002237 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 125 | 125 | B.1 | 0.001145 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 122 | 122 | AY.84 | 0.053368 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 115 | 115 | B.1.2 | 0.001013 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 109 | 109 | AY.86 | 0.090456 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 97 | 97 | AY.92 | 0.027866 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 85 | 85 | AY.118 | 0.005325 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 83 | 83 | AY.113 | 0.011818 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 83 | 83 | B.1.637 | 0.006065 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 81 | 81 | AY.116 | 0.023229 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 81 | 81 | AY.42 | 0.003259 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 80 | 80 | B.1.617.1 | 0.010317 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 66 | 66 | AY.3 | 0.000656 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 60 | 60 | B.1.177 | 0.00079 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 60 | 60 | B.1.427 | 0.00303 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 59 | 59 | AY.111 | 0.010806 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 57 | 57 | AY.20 | 0.002215 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 57 | 57 | B.1.1 | 0.001034 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 55 | 55 | B.1.234 | 0.007257 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 50 | 50 | AY.5.3 | 0.016869 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 47 | 47 | B.1.1.222 | 0.009588 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 42 | 42 | B.1.177.15 | 0.026498 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 41 | 41 | B.1.160 | 0.001279 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 40 | 40 | AY.106 | 0.013396 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 40 | 40 | B.1.1.214 | 0.002218 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 39 | 39 | AY.69 | 0.00728 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 38 | 38 | AY.46 | 0.003955 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 38 | 38 | B.1.1.228 | 0.115854 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 38 | 38 | B.1.1.311 | 0.01361 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 38 | 38 | B.1.526 | 0.000893 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 37 | 37 | AY.99 | 0.038825 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 37 | 37 | B.1.1.284 | 0.003974 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 36 | 36 | AY.13 | 0.005795 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 36 | 36 | AY.26 | 0.001019 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 36 | 36 | AY.29 | 0.000568 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 35 | 35 | AY.90 | 0.023956 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 34 | 34 | AY.98.1 | 0.001647 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 32 | 32 | B | 0.00409 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 31 | 31 | AY.119 | 0.001095 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 30 | 30 | B.1.258 | 0.001996 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 29 | 29 | AY.120 | 0.001078 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 29 | 29 | AY.79 | 0.035109 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 29 | 29 | B.1.429 | 0.000682 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 28 | 28 | AY.23 | 0.001953 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 26 | 26 | AY.19 | 0.029647 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 26 | 26 | AY.78 | 0.040062 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 25 | 25 | B.1.1.318 | 0.007544 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 25 | 25 | B.1.1.519 | 0.000993 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 24 | 24 | AY.36 | 0.003557 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 24 | 24 | B.1.1.251 | 0.190476 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 24 | 24 | B.1.595 | 0.006263 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 23 | 23 | AY.4.2 | 0.000499 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 23 | 23 | AY.45 | 0.002799 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 23 | 23 | B.1.1.316 | 0.021277 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 22 | 22 | AD.2 | 0.004817 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 22 | 22 | AY.93 | 0.006008 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 21 | 21 | AY.77 | 0.023675 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 21 | 21 | C.16 | 0.022269 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 20 | 20 | AY.110 | 0.002254 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 20 | 20 | B.1.399 | 0.038685 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 19 | 19 | AY.33 | 0.001269 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 19 | 19 | AY.41 | 0.005585 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 19 | 19 | AY.55 | 0.017431 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 19 | 19 | AY.88 | 0.016799 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 19 | 19 | C.37 | 0.002205 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 18 | 18 | B.1.160.15 | 0.089109 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 17 | 17 | AY.105 | 0.010932 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 17 | 17 | AY.62 | 0.007407 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 17 | 17 | AY.95 | 0.012938 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 16 | 16 | AY.67 | 0.007428 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 16 | 16 | AY.7.1 | 0.001803 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 16 | 16 | B.1.351 | 0.000476 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 16 | 16 | B.1.517 | 0.006832 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 15 | 15 | AY.108 | 0.016538 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 15 | 15 | AY.47 | 0.000467 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 15 | 15 | B.1.36.19 | 0.138889 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 15 | 15 | Q.1 | 0.001895 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 14 | 14 | AY.39.1 | 0.000555 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 14 | 14 | AY.81 | 0.027888 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 13 | 13 | AY.35 | 0.00303 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 12 | 12 | AY.46.2 | 0.007624 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 12 | 12 | B.1.36.16 | 0.017094 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 12 | 12 | Q.8 | 0.001979 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 11 | 11 | AY.104 | 0.021825 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 11 | 11 | AY.114 | 0.002542 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 11 | 11 | AY.48 | 0.005116 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 11 | 11 | AY.5.4 | 0.003044 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 11 | 11 | AY.61 | 0.001153 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 11 | 11 | AY.85 | 0.004699 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 11 | 11 | B.1.177.83 | 0.016296 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 11 | 11 | P.2 | 0.002053 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 10 | 10 | AY.16 | 0.003797 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 10 | 10 | AY.21 | 0.018975 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 10 | 10 | AY.32 | 0.005325 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 10 | 10 | B.1.1.369 | 0.004462 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 10 | 10 | B.1.369 | 0.002852 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 10 | 10 | B.1.575 | 0.003034 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 9 | 9 | AY.54 | 0.000858 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 9 | 9 | B.1.1.304 | 0.025281 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 9 | 9 | B.1.1.434 | 0.003137 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 9 | 9 | B.1.243 | 0.000626 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 9 | 9 | B.1.265 | 0.011436 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 9 | 9 | R.1 | 0.00081 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 8 | 8 | B.1.1.50 | 0.005431 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 8 | 8 | B.1.466.2 | 0.00313 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 7 | 7 | AY.109 | 0.005178 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 7 | 7 | AY.116.1 | 0.00218 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 7 | 7 | AY.34.1 | 0.00357 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 7 | 7 | AY.59 | 0.003708 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 7 | 7 | AY.83 | 0.012069 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 7 | 7 | AY.87 | 0.005828 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 7 | 7 | B.1.177.12 | 0.001062 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 7 | 7 | B.1.279 | 0.003595 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 7 | 7 | B.1.378 | 0.047945 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 7 | 7 | P.1.12 | 0.003388 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 7 | 7 | P.1.15 | 0.001626 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 6 | 6 | AY.107 | 0.002796 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 6 | 6 | AY.73 | 0.003992 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 6 | 6 | B.1.1.205 | 0.022305 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 6 | 6 | B.1.1.216 | 0.005343 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 6 | 6 | B.1.1.389 | 0.036364 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 6 | 6 | B.1.177.60 | 0.001311 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 6 | 6 | B.1.628 | 0.002114 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 5 | 5 | AY.46.1 | 0.005133 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 5 | 5 | AY.91 | 0.003652 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 5 | 5 | B.1.1.186 | 0.017182 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 5 | 5 | B.1.177.4 | 0.001055 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 5 | 5 | B.1.626 | 0.028571 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 4 | 4 | AY.120.2.1 | 0.001993 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 4 | 4 | AY.80 | 0.004515 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 4 | 4 | B.1.1.265 | 0.012618 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 4 | 4 | B.1.177.54 | 0.002426 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 4 | 4 | N.3 | 0.023256 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | AY.4.3 | 0.002525 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | AY.60 | 0.002814 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | AY.7.2 | 0.001678 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | B.1.1.486 | 0.004732 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | B.1.177.69 | 0.004451 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | B.1.237 | 0.014925 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | P.1.16 | 0.001122 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 3 | 3 | P.1.2 | 0.003468 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.1.305 | 0.007722 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.1.335 | 0.025974 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.1.393 | 0.222222 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.1.54 | 0.006042 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.1.99 | 0.047619 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.208 | 0.08 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.474 | 0.003802 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | B.1.534 | 0.025 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | Q.2 | 0.001227 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AE.1 | 0.011364 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.299 | 0.012195 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.386 | 0.066667 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.177.3 | 0.007634 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.622 | 0.012987 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp4 | 335 | Y335Y | taC | taT | 1 | 1 | S.1 | 0.00495 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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