CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 32 | V32V | V2795V | syn | gtC | gtT | 1211 | 1055 | 0.871181 | 8648-8650 |
ORF1ab/nsp4 | 32 | V32V | V2795V | syn | gtC | gtA | 1211 | 146 | 0.120562 | 8648-8650 |
ORF1ab/nsp4 | 32 | V32V | V2795V | syn | gtC | gtG | 1211 | 10 | 0.00825764 | 8648-8650 |
Details of the mutation V32V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1055 | 1211 | All | 0.000202 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 146 | 1211 | All | 0.000028 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtG | 10 | 1211 | All | 0.000002 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 132 | 208 | B.1.1.7 | 0.000118 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 73 | 208 | B.1.1.7 | 0.000065 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtG | 3 | 208 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 126 | 131 | B.1 | 0.001154 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 5 | 131 | B.1 | 0.000046 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 76 | 78 | B.1.617.2 | 0.000286 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 2 | 78 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 77 | 77 | B.1.160 | 0.002401 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 48 | 48 | B.1.1.101 | 0.48 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 25 | 40 | AY.25 | 0.00015 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 15 | 40 | AY.25 | 0.00009 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 35 | 39 | B.1.2 | 0.000308 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 4 | 39 | B.1.2 | 0.000035 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 37 | 37 | B.1.177 | 0.000487 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 27 | 33 | AY.4 | 0.000042 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 6 | 33 | AY.4 | 0.000009 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 26 | 26 | B.1.1.37 | 0.005014 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 22 | 25 | P.1 | 0.000347 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 3 | 25 | P.1 | 0.000047 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 22 | 23 | AY.103 | 0.000137 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 1 | 23 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 22 | 22 | D.2 | 0.001651 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 21 | 21 | B.1.601 | 0.636364 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 20 | 20 | B.1.36.29 | 0.010347 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 18 | 19 | AY.43 | 0.00008 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 1 | 19 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 19 | 19 | AY.84 | 0.008311 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 15 | 16 | B.1.1 | 0.000272 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 1 | 16 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 15 | 15 | AY.9 | 0.001014 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 14 | 14 | P.1.15 | 0.003253 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 13 | 13 | B.1.177.10 | 0.011414 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 12 | 12 | B.1.243 | 0.000835 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 11 | 11 | AY.23 | 0.000767 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 11 | 11 | B.1.1.299 | 0.134146 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 11 | 11 | B.1.637 | 0.000804 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 9 | 9 | AY.113 | 0.001282 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 5 | 6 | AY.6 | 0.000206 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 6 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 6 | 6 | B.1.621.1 | 0.003035 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 6 | 6 | Q.2 | 0.003681 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 5 | 5 | B.1.1.446 | 0.384615 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 2 | 4 | AY.20 | 0.000078 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 2 | 4 | AY.20 | 0.000078 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 3 | 4 | AY.26 | 0.000085 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 1 | 4 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 2 | 3 | AY.117 | 0.000169 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtG | 1 | 3 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtG | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtG | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 3 | 3 | B.1.221.3 | 0.0025 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 2 | 2 | B.1.1.301 | 0.002358 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.516 | 0.066667 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.1.95 | 0.019608 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.1.97 | 0.025641 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | B.58 | 0.010204 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp4 | 32 | V32V | gtC | gtA | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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