CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 285 | V285V | V3048V | syn | gtA | gtG | 2967 | 2947 | 0.993259 | 9407-9409 |
ORF1ab/nsp4 | 285 | V285V | V3048V | syn | gtA | gtT | 2967 | 18 | 0.00606673 | 9407-9409 |
ORF1ab/nsp4 | 285 | V285V | V3048V | syn | gtA | gtC | 2967 | 2 | 0.000674082 | 9407-9409 |
Details of the mutation V285V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2947 | 2967 | All | 0.000564 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtT | 18 | 2967 | All | 0.000003 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtC | 2 | 2967 | All | 0 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 746 | 747 | AY.4 | 0.001161 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtT | 1 | 747 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 473 | 473 | B.1.177.21 | 0.03617 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 357 | 357 | B.1.177.15 | 0.225237 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 215 | 215 | B.1.1.7 | 0.000192 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 136 | 136 | B.1.177.12 | 0.020631 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 123 | 124 | B.1.617.2 | 0.000463 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtC | 1 | 124 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 96 | 96 | AY.117 | 0.008114 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 59 | 59 | AY.43 | 0.000261 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 38 | 38 | B.1.2 | 0.000335 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 36 | 36 | AA.7 | 0.330275 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 35 | 36 | AY.25 | 0.000211 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtT | 1 | 36 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 35 | 35 | R.1 | 0.00315 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 32 | 32 | AY.103 | 0.000199 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 32 | 32 | B.1.1 | 0.000581 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 30 | 30 | B.1.535 | 0.857143 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 29 | 29 | AY.98 | 0.002291 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 25 | 26 | B.1 | 0.000229 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtT | 1 | 26 | B.1 | 0.000009 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 25 | 25 | B.1.351 | 0.000743 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 16 | 20 | AY.44 | 0.000097 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtT | 4 | 20 | AY.44 | 0.000024 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 18 | 18 | B.1.177 | 0.000237 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 18 | 18 | B.1.429 | 0.000424 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 17 | 17 | AY.33 | 0.001135 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 17 | 17 | B.1.311 | 0.004668 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 15 | 15 | B.1.526 | 0.000353 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 14 | 14 | AY.26 | 0.000396 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 14 | 14 | B.1.214.2 | 0.008393 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 14 | 14 | P.1 | 0.000221 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 13 | 13 | AY.42 | 0.000523 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 10 | 10 | AY.111 | 0.001832 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 10 | 10 | AY.39 | 0.000247 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 10 | 10 | B.1.160.32 | 0.042918 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 9 | 9 | B.6.6 | 0.008 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 7 | 7 | B.1.1.344 | 0.075269 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 6 | 6 | B.1.1.304 | 0.016854 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtT | 4 | 6 | B.1.1.318 | 0.001207 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 6 | B.1.1.318 | 0.000604 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 6 | 6 | B.1.324 | 0.009631 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 4 | 4 | B.1.375 | 0.003279 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 4 | 4 | B.1.623 | 0.002146 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 3 | AY.20 | 0.000078 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtT | 1 | 3 | AY.20 | 0.000039 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | AY.94 | 0.001328 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | B.1.1.153 | 0.003286 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | B.1.1.319 | 0.052632 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 3 | B.1.1.37 | 0.000386 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtT | 1 | 3 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | B.1.1.409 | 0.008499 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | B.1.177.75 | 0.003122 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | B.1.177.83 | 0.004444 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 3 | 3 | N.4 | 0.012766 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtT | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 2 | B.1.1.237 | 0.010811 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 2 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtT | 1 | 2 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtC | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtT | 1 | 1 | B.1.252 | 0.006623 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | B.10 | 0.008264 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | C.32 | 0.023256 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp4 | 285 | V285V | gtA | gtG | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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