CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = V180A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4180V180AV2943AnonsyngTtgCt1211120.925629092-9094
ORF1ab/nsp4180V180AV2943AnonsyngTTgCG12140.03305789092-9094
ORF1ab/nsp4180V180AV2943AnonsyngTTgCC12130.02479349092-9094
ORF1ab/nsp4180V180AV2943AnonsyngTTgCA12120.01652899092-9094

Details of the mutation V180A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4180V180AgTtgCt112121All0.000021
ORF1ab/nsp4180V180AgTTgCG4121All0.000001
ORF1ab/nsp4180V180AgTTgCC3121All0.000001
ORF1ab/nsp4180V180AgTTgCA2121All0
ORF1ab/nsp4180V180AgTtgCt3132B.1.1.70.000028
ORF1ab/nsp4180V180AgTTgCC132B.1.1.70.000001
ORF1ab/nsp4180V180AgTtgCt3131AY.440.000189
ORF1ab/nsp4180V180AgTTgCG4120.222222
ORF1ab/nsp4180V180AgTtgCt4120.222222
ORF1ab/nsp4180V180AgTTgCA2120.111111
ORF1ab/nsp4180V180AgTTgCC2120.111111
ORF1ab/nsp4180V180AgTtgCt1212B.1.20.000106
ORF1ab/nsp4180V180AgTtgCt88B.1.1.280.00249
ORF1ab/nsp4180V180AgTtgCt55AY.260.000142
ORF1ab/nsp4180V180AgTtgCt55AY.40.000008
ORF1ab/nsp4180V180AgTtgCt33Q.20.00184
ORF1ab/nsp4180V180AgTtgCt22AY.290.000032
ORF1ab/nsp4180V180AgTtgCt22B.1.617.20.000008
ORF1ab/nsp4180V180AgTtgCt11A0.000387
ORF1ab/nsp4180V180AgTtgCt11AY.4.50.000107
ORF1ab/nsp4180V180AgTtgCt11AY.430.000004
ORF1ab/nsp4180V180AgTtgCt11AY.50.000021
ORF1ab/nsp4180V180AgTtgCt11AY.690.000187
ORF1ab/nsp4180V180AgTtgCt11AY.850.000427
ORF1ab/nsp4180V180AgTtgCt11AY.9.20.000037
ORF1ab/nsp4180V180AgTtgCt11C.370.000116
ORF1ab/nsp4180V180AgTtgCt11P.1.70.000319