CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = T492T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4492T492TT3255TsynacCacT437042810.97963410028-10030
ORF1ab/nsp4492T492TT3255TsynacCacA4370830.018993110028-10030
ORF1ab/nsp4492T492TT3255TsynacCacG437060.00137310028-10030

Details of the mutation T492T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4492T492TacCacT42814370All0.000819
ORF1ab/nsp4492T492TacCacA834370All0.000016
ORF1ab/nsp4492T492TacCacG64370All0.000001
ORF1ab/nsp4492T492TacCacT12721272B.1.5770.874227
ORF1ab/nsp4492T492TacCacT756785B.1.1.70.000677
ORF1ab/nsp4492T492TacCacA29785B.1.1.70.000026
ORF1ab/nsp4492T492TacCacT538545B.1.5950.140397
ORF1ab/nsp4492T492TacCacA7545B.1.5950.001827
ORF1ab/nsp4492T492TacCacT254254U.30.980695
ORF1ab/nsp4492T492TacCacT199199B.1.20.001752
ORF1ab/nsp4492T492TacCacT121126B.10.001108
ORF1ab/nsp4492T492TacCacA5126B.10.000046
ORF1ab/nsp4492T492TacCacT116116B.1.438.10.012442
ORF1ab/nsp4492T492TacCacT6469B.1.5260.001504
ORF1ab/nsp4492T492TacCacA569B.1.5260.000118
ORF1ab/nsp4492T492TacCacT5152B.1.10.000925
ORF1ab/nsp4492T492TacCacG152B.1.10.000018
ORF1ab/nsp4492T492TacCacT4949B.1.2580.003261
ORF1ab/nsp4492T492TacCacT4042B.1.617.20.000151
ORF1ab/nsp4492T492TacCacA242B.1.617.20.000008
ORF1ab/nsp4492T492TacCacT3940B.1.1.280.012138
ORF1ab/nsp4492T492TacCacA140B.1.1.280.000311
ORF1ab/nsp4492T492TacCacT3940B.1.1770.000514
ORF1ab/nsp4492T492TacCacA140B.1.1770.000013
ORF1ab/nsp4492T492TacCacT3939B.1.2430.002714
ORF1ab/nsp4492T492TacCacT2834P.10.000441
ORF1ab/nsp4492T492TacCacG534P.10.000079
ORF1ab/nsp4492T492TacCacA134P.10.000016
ORF1ab/nsp4492T492TacCacT3232B.1.1.2140.001775
ORF1ab/nsp4492T492TacCacT3030B.1.3510.000892
ORF1ab/nsp4492T492TacCacT2929B.1.1.3540.127193
ORF1ab/nsp4492T492TacCacT2727Q.30.003916
ORF1ab/nsp4492T492TacCacA1424B.1.4290.000329
ORF1ab/nsp4492T492TacCacT1024B.1.4290.000235
ORF1ab/nsp4492T492TacCacT2323B.1.2400.004958
ORF1ab/nsp4492T492TacCacT2222B.1.5960.001917
ORF1ab/nsp4492T492TacCacT2121B.1.1600.000655
ORF1ab/nsp4492T492TacCacT2121B.1.6370.001535
ORF1ab/nsp4492T492TacCacT2020AY.680.005475
ORF1ab/nsp4492T492TacCacT1818AY.700.003753
ORF1ab/nsp4492T492TacCacT1818B.1.177.600.003932
ORF1ab/nsp4492T492TacCacT1515AY.610.001572
ORF1ab/nsp4492T492TacCacT1515B.1.5610.005955
ORF1ab/nsp4492T492TacCacT1414AY.9.20.000514
ORF1ab/nsp4492T492TacCacT1313AY.260.000368
ORF1ab/nsp4492T492TacCacT1212B.1.2340.001583
ORF1ab/nsp4492T492TacCacT1111B.1.1.2630.017134
ORF1ab/nsp4492T492TacCacT1111B.1.5600.050926
ORF1ab/nsp4492T492TacCacT99B.1.177.770.006536
ORF1ab/nsp4492T492TacCacT99B.1.214.20.005396
ORF1ab/nsp4492T492TacCacT99C.36.30.005105
ORF1ab/nsp4492T492TacCacT78B.1.1.630.002701
ORF1ab/nsp4492T492TacCacA18B.1.1.630.000386
ORF1ab/nsp4492T492TacCacT88B.1.6090.003835
ORF1ab/nsp4492T492TacCacT77AY.140.000616
ORF1ab/nsp4492T492TacCacT77AY.75.10.001262
ORF1ab/nsp4492T492TacCacT77B.1.2210.000497
ORF1ab/nsp4492T492TacCacT77B.1.3690.001997
ORF1ab/nsp4492T492TacCacT77B.1.3960.00494
ORF1ab/nsp4492T492TacCacA57D.20.000375
ORF1ab/nsp4492T492TacCacT27D.20.00015
ORF1ab/nsp4492T492TacCacT56B0.000639
ORF1ab/nsp4492T492TacCacA16B0.000128
ORF1ab/nsp4492T492TacCacT66B.1.5760.00544
ORF1ab/nsp4492T492TacCacT66B.1.617.10.000774
ORF1ab/nsp4492T492TacCacT55A.210.01385
ORF1ab/nsp4492T492TacCacT55AY.530.001438
ORF1ab/nsp4492T492TacCacT55B.1.1.4860.007886
ORF1ab/nsp4492T492TacCacT55B.1.1.500.003394
ORF1ab/nsp4492T492TacCacT45B.1.1.700.001364
ORF1ab/nsp4492T492TacCacA15B.1.1.700.000341
ORF1ab/nsp4492T492TacCacT55B.1.2840.065789
ORF1ab/nsp4492T492TacCacT44A.20.002647
ORF1ab/nsp4492T492TacCacT44AY.20.001425
ORF1ab/nsp4492T492TacCacT44B.1.1.1860.013746
ORF1ab/nsp4492T492TacCacT44B.1.1.390.002039
ORF1ab/nsp4492T492TacCacT44B.1.177.750.004162
ORF1ab/nsp4492T492TacCacT44B.1.258.30.0067
ORF1ab/nsp4492T492TacCacT44B.1.4970.001259
ORF1ab/nsp4492T492TacCacT44B.1.5250.000453
ORF1ab/nsp4492T492TacCacT33A.2.40.010101
ORF1ab/nsp4492T492TacCacT33AY.470.000093
ORF1ab/nsp4492T492TacCacT33AY.650.001599
ORF1ab/nsp4492T492TacCacT33AY.740.000347
ORF1ab/nsp4492T492TacCacA23B.1.1.10.000653
ORF1ab/nsp4492T492TacCacT13B.1.1.10.000327
ORF1ab/nsp4492T492TacCacT33B.1.1.3180.000905
ORF1ab/nsp4492T492TacCacT33B.1.160.230.014493
ORF1ab/nsp4492T492TacCacT33B.1.1650.035714
ORF1ab/nsp4492T492TacCacT33B.1.1700.012931
ORF1ab/nsp4492T492TacCacT33B.1.177.440.001557
ORF1ab/nsp4492T492TacCacT33B.1.177.730.001699
ORF1ab/nsp4492T492TacCacT33B.1.3240.004815
ORF1ab/nsp4492T492TacCacT33B.1.360.000438
ORF1ab/nsp4492T492TacCacT33B.1.3890.003006
ORF1ab/nsp4492T492TacCacT33B.1.4090.002344
ORF1ab/nsp4492T492TacCacT33P.1.70.000958
ORF1ab/nsp4492T492TacCacT22AD.20.000438
ORF1ab/nsp4492T492TacCacT22AY.100.00106
ORF1ab/nsp4492T492TacCacT22AY.350.000466
ORF1ab/nsp4492T492TacCacT22B.1.1.1530.002191
ORF1ab/nsp4492T492TacCacT22B.1.1.2220.000408
ORF1ab/nsp4492T492TacCacT22B.1.1.250.001137
ORF1ab/nsp4492T492TacCacT22B.1.1.3170.000823
ORF1ab/nsp4492T492TacCacT12B.1.1.330.000421
ORF1ab/nsp4492T492TacCacA12B.1.1.330.000421
ORF1ab/nsp4492T492TacCacT22B.1.1.3480.001592
ORF1ab/nsp4492T492TacCacT22B.1.1.3620.011236
ORF1ab/nsp4492T492TacCacT22B.1.1.4160.00181
ORF1ab/nsp4492T492TacCacT22B.1.1.4240.090909
ORF1ab/nsp4492T492TacCacT22B.1.177.210.000153
ORF1ab/nsp4492T492TacCacT22B.1.177.810.000379
ORF1ab/nsp4492T492TacCacT22B.1.1890.008584
ORF1ab/nsp4492T492TacCacT22B.1.3110.000549
ORF1ab/nsp4492T492TacCacA12B.1.4270.00005
ORF1ab/nsp4492T492TacCacT12B.1.4270.00005
ORF1ab/nsp4492T492TacCacT22B.1.4700.002809
ORF1ab/nsp4492T492TacCacA12B.1.6230.000536
ORF1ab/nsp4492T492TacCacT12B.1.6230.000536
ORF1ab/nsp4492T492TacCacT22B.1.9.30.076923
ORF1ab/nsp4492T492TacCacA22C.140.008658
ORF1ab/nsp4492T492TacCacT12C.180.002591
ORF1ab/nsp4492T492TacCacA12C.180.002591
ORF1ab/nsp4492T492TacCacT22P.1.10.000635
ORF1ab/nsp4492T492TacCacT22P.1.140.000096
ORF1ab/nsp4492T492TacCacT22Q.50.033898
ORF1ab/nsp4492T492TacCacT22Q.80.00033
ORF1ab/nsp4492T492TacCacT11A.10.000282
ORF1ab/nsp4492T492TacCacT11AU.30.00211
ORF1ab/nsp4492T492TacCacT11AY.440.000006
ORF1ab/nsp4492T492TacCacT11AY.510.000909
ORF1ab/nsp4492T492TacCacT11AY.540.000095
ORF1ab/nsp4492T492TacCacT11AY.550.000917
ORF1ab/nsp4492T492TacCacA11AY.620.000436
ORF1ab/nsp4492T492TacCacT11AY.690.000187
ORF1ab/nsp4492T492TacCacT11AY.710.000475
ORF1ab/nsp4492T492TacCacT11AY.730.000665
ORF1ab/nsp4492T492TacCacT11AY.750.000056
ORF1ab/nsp4492T492TacCacT11AY.90.000068
ORF1ab/nsp4492T492TacCacT11AY.980.000079
ORF1ab/nsp4492T492TacCacT11B.1.1.1390.022727
ORF1ab/nsp4492T492TacCacT11B.1.1.2130.021739
ORF1ab/nsp4492T492TacCacT11B.1.1.2800.003086
ORF1ab/nsp4492T492TacCacT11B.1.1.2840.000107
ORF1ab/nsp4492T492TacCacT11B.1.1.3010.001179
ORF1ab/nsp4492T492TacCacT11B.1.1.3110.000358
ORF1ab/nsp4492T492TacCacT11B.1.1.3290.003846
ORF1ab/nsp4492T492TacCacT11B.1.1.3720.000689
ORF1ab/nsp4492T492TacCacT11B.1.1.3980.003226
ORF1ab/nsp4492T492TacCacT11B.1.1.4330.001425
ORF1ab/nsp4492T492TacCacT11B.1.1.450.014085
ORF1ab/nsp4492T492TacCacT11B.1.1390.000733
ORF1ab/nsp4492T492TacCacT11B.1.160.100.008065
ORF1ab/nsp4492T492TacCacT11B.1.160.140.002119
ORF1ab/nsp4492T492TacCacT11B.1.160.290.004219
ORF1ab/nsp4492T492TacCacT11B.1.177.40.000211
ORF1ab/nsp4492T492TacCacT11B.1.177.450.000381
ORF1ab/nsp4492T492TacCacT11B.1.177.610.043478
ORF1ab/nsp4492T492TacCacT11B.1.177.70.000165
ORF1ab/nsp4492T492TacCacT11B.1.177.790.002342
ORF1ab/nsp4492T492TacCacT11B.1.177.80.000752
ORF1ab/nsp4492T492TacCacT11B.1.177.840.006667
ORF1ab/nsp4492T492TacCacT11B.1.221.30.000833
ORF1ab/nsp4492T492TacCacT11B.1.2320.000537
ORF1ab/nsp4492T492TacCacT11B.1.258.140.00098
ORF1ab/nsp4492T492TacCacT11B.1.3460.001311
ORF1ab/nsp4492T492TacCacT11B.1.3490.000715
ORF1ab/nsp4492T492TacCacT11B.1.351.20.000303
ORF1ab/nsp4492T492TacCacT11B.1.36.180.00042
ORF1ab/nsp4492T492TacCacT11B.1.36.80.001
ORF1ab/nsp4492T492TacCacT11B.1.3670.000792
ORF1ab/nsp4492T492TacCacT11B.1.4080.00369
ORF1ab/nsp4492T492TacCacT11B.1.4320.011236
ORF1ab/nsp4492T492TacCacT11B.1.4380.006536
ORF1ab/nsp4492T492TacCacT11B.1.4990.00105
ORF1ab/nsp4492T492TacCacT11B.1.5640.000426
ORF1ab/nsp4492T492TacCacA11B.1.5670.003333
ORF1ab/nsp4492T492TacCacT11B.1.5820.000491
ORF1ab/nsp4492T492TacCacT11B.1.5970.00463
ORF1ab/nsp4492T492TacCacT11B.1.6120.002653
ORF1ab/nsp4492T492TacCacT11B.1.6250.002353
ORF1ab/nsp4492T492TacCacT11B.1.80.001972
ORF1ab/nsp4492T492TacCacT11B.30.000831
ORF1ab/nsp4492T492TacCacT11C.10.002392
ORF1ab/nsp4492T492TacCacT11C.20.016129
ORF1ab/nsp4492T492TacCacT11C.300.001727
ORF1ab/nsp4492T492TacCacT11C.350.000774
ORF1ab/nsp4492T492TacCacT11N.40.004255
ORF1ab/nsp4492T492TacCacT11N.50.001767
ORF1ab/nsp4492T492TacCacT11P.1.120.000484
ORF1ab/nsp4492T492TacCacT11P.1.150.000232
ORF1ab/nsp4492T492TacCacT11P.1.170.000162
ORF1ab/nsp4492T492TacCacT11P.1.60.001946
ORF1ab/nsp4492T492TacCacT11P.20.000187