CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = T419T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4419T419TT3182TsynacCacT374236210.9676649809-9811
ORF1ab/nsp4419T419TT3182TsynacCacA37421190.03180129809-9811
ORF1ab/nsp4419T419TT3182TsynacCacG374220.0005344749809-9811

Details of the mutation T419T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4419T419TacCacT36213742All0.000693
ORF1ab/nsp4419T419TacCacA1193742All0.000023
ORF1ab/nsp4419T419TacCacG23742All0
ORF1ab/nsp4419T419TacCacT17641764AY.1060.590757
ORF1ab/nsp4419T419TacCacT443446AY.40.000689
ORF1ab/nsp4419T419TacCacA2446AY.40.000003
ORF1ab/nsp4419T419TacCacG1446AY.40.000002
ORF1ab/nsp4419T419TacCacT388390AY.250.002334
ORF1ab/nsp4419T419TacCacA2390AY.250.000012
ORF1ab/nsp4419T419TacCacT264286B.1.1.70.000236
ORF1ab/nsp4419T419TacCacA22286B.1.1.70.00002
ORF1ab/nsp4419T419TacCacT8686B.1.20.000757
ORF1ab/nsp4419T419TacCacT6570AY.440.000396
ORF1ab/nsp4419T419TacCacA570AY.440.00003
ORF1ab/nsp4419T419TacCacT5959B.1.258.220.157333
ORF1ab/nsp4419T419TacCacT4449B.1.617.20.000166
ORF1ab/nsp4419T419TacCacA549B.1.617.20.000019
ORF1ab/nsp4419T419TacCacT2737B.10.000247
ORF1ab/nsp4419T419TacCacA1037B.10.000092
ORF1ab/nsp4419T419TacCacT2931AY.430.000128
ORF1ab/nsp4419T419TacCacA231AY.430.000009
ORF1ab/nsp4419T419TacCacT3131P.1.140.001482
ORF1ab/nsp4419T419TacCacT2525P.10.000394
ORF1ab/nsp4419T419TacCacT1120AY.1030.000068
ORF1ab/nsp4419T419TacCacA920AY.1030.000056
ORF1ab/nsp4419T419TacCacT1820AY.30.000179
ORF1ab/nsp4419T419TacCacA220AY.30.00002
ORF1ab/nsp4419T419TacCacT1617B.1.10.00029
ORF1ab/nsp4419T419TacCacA117B.1.10.000018
ORF1ab/nsp4419T419TacCacT1717B.1.4740.032319
ORF1ab/nsp4419T419TacCacT1616B.1.4290.000376
ORF1ab/nsp4419T419TacCacT1314B.1.1770.000171
ORF1ab/nsp4419T419TacCacA114B.1.1770.000013
ORF1ab/nsp4419T419TacCacT1414B.1.177.730.007928
ORF1ab/nsp4419T419TacCacT1414B.1.2210.000994
ORF1ab/nsp4419T419TacCacA812AY.1020.000212
ORF1ab/nsp4419T419TacCacT412AY.1020.000106
ORF1ab/nsp4419T419TacCacA1111AY.90.000744
ORF1ab/nsp4419T419TacCacT1111B.1.3110.00302
ORF1ab/nsp4419T419TacCacA79AY.230.000488
ORF1ab/nsp4419T419TacCacT29AY.230.000139
ORF1ab/nsp4419T419TacCacT99AY.750.000504
ORF1ab/nsp4419T419TacCacT88AY.9.20.000294
ORF1ab/nsp4419T419TacCacT88AY.990.008395
ORF1ab/nsp4419T419TacCacT88B.1.1.4340.002788
ORF1ab/nsp4419T419TacCacT77AJ.10.318182
ORF1ab/nsp4419T419TacCacT47AY.1190.000141
ORF1ab/nsp4419T419TacCacA37AY.1190.000106
ORF1ab/nsp4419T419TacCacT77AY.3.10.000597
ORF1ab/nsp4419T419TacCacT77AY.46.60.000505
ORF1ab/nsp4419T419TacCacT77B.1.5260.000165
ORF1ab/nsp4419T419TacCacT57B.1.617.10.000645
ORF1ab/nsp4419T419TacCacA27B.1.617.10.000258
ORF1ab/nsp4419T419TacCacT66AY.200.000233
ORF1ab/nsp4419T419TacCacT66AY.260.00017
ORF1ab/nsp4419T419TacCacT56AY.4.50.000537
ORF1ab/nsp4419T419TacCacA16AY.4.50.000107
ORF1ab/nsp4419T419TacCacT66B.1.1.5190.000238
ORF1ab/nsp4419T419TacCacT66B.1.2430.000418
ORF1ab/nsp4419T419TacCacT55AY.1130.000712
ORF1ab/nsp4419T419TacCacA55AY.390.000124
ORF1ab/nsp4419T419TacCacT55AY.50.000103
ORF1ab/nsp4419T419TacCacT45B0.000511
ORF1ab/nsp4419T419TacCacA15B0.000128
ORF1ab/nsp4419T419TacCacT55B.1.360.00073
ORF1ab/nsp4419T419TacCacT44AY.420.000161
ORF1ab/nsp4419T419TacCacT44AY.46.30.003735
ORF1ab/nsp4419T419TacCacT44B.1.1.2140.000222
ORF1ab/nsp4419T419TacCacT44B.1.6210.000354
ORF1ab/nsp4419T419TacCacT44R.10.00036
ORF1ab/nsp4419T419TacCacT23AY.290.000032
ORF1ab/nsp4419T419TacCacA13AY.290.000016
ORF1ab/nsp4419T419TacCacT23AY.550.001835
ORF1ab/nsp4419T419TacCacA13AY.550.000917
ORF1ab/nsp4419T419TacCacT23AY.98.10.000097
ORF1ab/nsp4419T419TacCacA13AY.98.10.000048
ORF1ab/nsp4419T419TacCacT23B.1.1.10.000653
ORF1ab/nsp4419T419TacCacA13B.1.1.10.000327
ORF1ab/nsp4419T419TacCacT33B.1.1.280.000934
ORF1ab/nsp4419T419TacCacT33B.1.1.330.001263
ORF1ab/nsp4419T419TacCacT33B.1.1.370.000579
ORF1ab/nsp4419T419TacCacT33B.1.2340.000396
ORF1ab/nsp4419T419TacCacT33B.1.2580.0002
ORF1ab/nsp4419T419TacCacT33B.1.3510.000089
ORF1ab/nsp4419T419TacCacT33B.1.4090.002344
ORF1ab/nsp4419T419TacCacA33B.1.4260.003027
ORF1ab/nsp4419T419TacCacT33B.1.4270.000151
ORF1ab/nsp4419T419TacCacT33B.1.5230.007353
ORF1ab/nsp4419T419TacCacT33C.370.000348
ORF1ab/nsp4419T419TacCacT33D.20.000225
ORF1ab/nsp4419T419TacCacG120.055556
ORF1ab/nsp4419T419TacCacT120.055556
ORF1ab/nsp4419T419TacCacT22AY.1010.000981
ORF1ab/nsp4419T419TacCacT12AY.300.000396
ORF1ab/nsp4419T419TacCacA12AY.300.000396
ORF1ab/nsp4419T419TacCacT22AY.360.000296
ORF1ab/nsp4419T419TacCacT12AY.39.10.00004
ORF1ab/nsp4419T419TacCacA12AY.39.10.00004
ORF1ab/nsp4419T419TacCacT22AY.4.20.000043
ORF1ab/nsp4419T419TacCacT22AY.470.000062
ORF1ab/nsp4419T419TacCacA12AY.520.000814
ORF1ab/nsp4419T419TacCacT12AY.520.000814
ORF1ab/nsp4419T419TacCacT22AY.590.001059
ORF1ab/nsp4419T419TacCacT22AY.620.000871
ORF1ab/nsp4419T419TacCacT22AY.700.000417
ORF1ab/nsp4419T419TacCacA22B.1.1.1210.004854
ORF1ab/nsp4419T419TacCacT22B.1.1.2840.000215
ORF1ab/nsp4419T419TacCacT22B.1.1.2890.004167
ORF1ab/nsp4419T419TacCacT22B.1.1.3180.000604
ORF1ab/nsp4419T419TacCacT22B.1.1.4090.005666
ORF1ab/nsp4419T419TacCacT22B.1.1580.047619
ORF1ab/nsp4419T419TacCacT22B.1.177.570.000562
ORF1ab/nsp4419T419TacCacT22B.1.177.820.000955
ORF1ab/nsp4419T419TacCacT22B.1.3710.002245
ORF1ab/nsp4419T419TacCacT22B.1.4000.000858
ORF1ab/nsp4419T419TacCacT22B.1.4920.014085
ORF1ab/nsp4419T419TacCacT22B.1.5960.000174
ORF1ab/nsp4419T419TacCacT22B.1.6280.000705
ORF1ab/nsp4419T419TacCacT11A.10.000282
ORF1ab/nsp4419T419TacCacT11AY.1050.000643
ORF1ab/nsp4419T419TacCacT11AY.1170.000085
ORF1ab/nsp4419T419TacCacT11AY.23.10.000417
ORF1ab/nsp4419T419TacCacA11AY.34.10.00051
ORF1ab/nsp4419T419TacCacT11AY.400.000964
ORF1ab/nsp4419T419TacCacT11AY.410.000294
ORF1ab/nsp4419T419TacCacT11AY.460.000104
ORF1ab/nsp4419T419TacCacT11AY.580.000907
ORF1ab/nsp4419T419TacCacT11AY.60.000041
ORF1ab/nsp4419T419TacCacT11AY.7.10.000113
ORF1ab/nsp4419T419TacCacT11AY.75.10.00018
ORF1ab/nsp4419T419TacCacT11AY.840.000437
ORF1ab/nsp4419T419TacCacT11AY.920.000287
ORF1ab/nsp4419T419TacCacT11AY.99.20.000092
ORF1ab/nsp4419T419TacCacA11B.1.1.120.007463
ORF1ab/nsp4419T419TacCacT11B.1.1.1270.0625
ORF1ab/nsp4419T419TacCacT11B.1.1.1610.003534
ORF1ab/nsp4419T419TacCacT11B.1.1.1890.001513
ORF1ab/nsp4419T419TacCacT11B.1.1.2160.00089
ORF1ab/nsp4419T419TacCacT11B.1.1.2820.011628
ORF1ab/nsp4419T419TacCacA11B.1.1.3060.000438
ORF1ab/nsp4419T419TacCacT11B.1.1.3480.000796
ORF1ab/nsp4419T419TacCacT11B.1.1.4040.015873
ORF1ab/nsp4419T419TacCacT11B.1.1.700.000341
ORF1ab/nsp4419T419TacCacT11B.1.1600.000031
ORF1ab/nsp4419T419TacCacA11B.1.177.170.000821
ORF1ab/nsp4419T419TacCacA11B.1.177.180.00116
ORF1ab/nsp4419T419TacCacT11B.1.177.810.000189
ORF1ab/nsp4419T419TacCacT11B.1.230.006061
ORF1ab/nsp4419T419TacCacT11B.1.2350.002519
ORF1ab/nsp4419T419TacCacT11B.1.2410.000812
ORF1ab/nsp4419T419TacCacT11B.1.2650.001271
ORF1ab/nsp4419T419TacCacT11B.1.36.100.004785
ORF1ab/nsp4419T419TacCacT11B.1.4220.000812
ORF1ab/nsp4419T419TacCacT11B.1.5170.000427
ORF1ab/nsp4419T419TacCacT11B.1.5640.000426
ORF1ab/nsp4419T419TacCacT11B.1.5750.000303
ORF1ab/nsp4419T419TacCacA11B.1.5760.000907
ORF1ab/nsp4419T419TacCacA11B.1.5950.000261
ORF1ab/nsp4419T419TacCacT11B.1.6090.000479
ORF1ab/nsp4419T419TacCacT11B.1.6300.005236
ORF1ab/nsp4419T419TacCacT11B.1.6320.006711
ORF1ab/nsp4419T419TacCacT11C.350.000774
ORF1ab/nsp4419T419TacCacT11P.1.10.000318
ORF1ab/nsp4419T419TacCacT11P.1.100.000269
ORF1ab/nsp4419T419TacCacA11Q.80.000165