CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = T419S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4419T419ST3182SnonsynAccTcc22160.7272739809-9811
ORF1ab/nsp4419T419ST3182SnonsynaCcaGc2230.1363649809-9811
ORF1ab/nsp4419T419ST3182SnonsynAcCTcT2220.09090919809-9811
ORF1ab/nsp4419T419ST3182SnonsynaCCaGT2210.04545459809-9811

Details of the mutation T419S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4419T419SAccTcc1622All0.000003
ORF1ab/nsp4419T419SaCcaGc322All0.000001
ORF1ab/nsp4419T419SAcCTcT222All0
ORF1ab/nsp4419T419SaCCaGT122All0
ORF1ab/nsp4419T419SAccTcc10120.555556
ORF1ab/nsp4419T419SaCcaGc1120.055556
ORF1ab/nsp4419T419SAcCTcT1120.055556
ORF1ab/nsp4419T419SAccTcc45B.1.1.70.000004
ORF1ab/nsp4419T419SaCcaGc15B.1.1.70.000001
ORF1ab/nsp4419T419SaCcaGc14B.1.2210.000071
ORF1ab/nsp4419T419SAcCTcT14B.1.2210.000071
ORF1ab/nsp4419T419SAccTcc14B.1.2210.000071
ORF1ab/nsp4419T419SaCCaGT14B.1.2210.000071
ORF1ab/nsp4419T419SAccTcc11B.1.10.000018