CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = T354S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4354T354ST3117SnonsynaCtaGt1370.5384629614-9616
ORF1ab/nsp4354T354ST3117SnonsynaCTaGC1340.3076929614-9616
ORF1ab/nsp4354T354ST3117SnonsynActTct1320.1538469614-9616

Details of the mutation T354S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4354T354SaCtaGt713All0.000001
ORF1ab/nsp4354T354SaCTaGC413All0.000001
ORF1ab/nsp4354T354SActTct213All0
ORF1ab/nsp4354T354SaCTaGC450.222222
ORF1ab/nsp4354T354SActTct150.055556
ORF1ab/nsp4354T354SaCtaGt11B.10.000009
ORF1ab/nsp4354T354SActTct11B.1.1.2540.011236
ORF1ab/nsp4354T354SaCtaGt11B.1.1.5190.00004
ORF1ab/nsp4354T354SaCtaGt11B.1.1.70.000001
ORF1ab/nsp4354T354SaCtaGt11B.1.221.30.000833
ORF1ab/nsp4354T354SaCtaGt11B.1.258.50.008772
ORF1ab/nsp4354T354SaCtaGt11B.1.4290.000024
ORF1ab/nsp4354T354SaCtaGt11P.10.000016