CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = T269A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4269T269AT3032AnonsynAcaGca858519359-9361

Details of the mutation T269A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4269T269AAcaGca8585All0.000016
ORF1ab/nsp4269T269AAcaGca1515AY.40.000023
ORF1ab/nsp4269T269AAcaGca1111B.1.1.70.00001
ORF1ab/nsp4269T269AAcaGca88B.1.617.20.00003
ORF1ab/nsp4269T269AAcaGca77AY.30.00007
ORF1ab/nsp4269T269AAcaGca77B.1.20.000062
ORF1ab/nsp4269T269AAcaGca44AY.360.000593
ORF1ab/nsp4269T269AAcaGca44AY.440.000024
ORF1ab/nsp4269T269AAcaGca33AY.1020.00008
ORF1ab/nsp4269T269AAcaGca33B.10.000027
ORF1ab/nsp4269T269AAcaGca22AY.1000.000092
ORF1ab/nsp4269T269AAcaGca22AY.1140.000462
ORF1ab/nsp4269T269AAcaGca22AY.1190.000071
ORF1ab/nsp4269T269AAcaGca22AY.1200.000074
ORF1ab/nsp4269T269AAcaGca22AY.250.000012
ORF1ab/nsp4269T269AAcaGca22B.1.4290.000047
ORF1ab/nsp4269T269AAcaGca11AY.200.000039
ORF1ab/nsp4269T269AAcaGca11AY.430.000004
ORF1ab/nsp4269T269AAcaGca11AY.450.000122
ORF1ab/nsp4269T269AAcaGca11AY.9.20.000037
ORF1ab/nsp4269T269AAcaGca11AY.99.20.000092
ORF1ab/nsp4269T269AAcaGca11B.1.1.2410.00207
ORF1ab/nsp4269T269AAcaGca11B.1.1.4480.002033
ORF1ab/nsp4269T269AAcaGca11B.1.1.630.000386
ORF1ab/nsp4269T269AAcaGca11B.1.2340.000132
ORF1ab/nsp4269T269AAcaGca11C.310.017857
ORF1ab/nsp4269T269AAcaGca11P.10.000016