CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 189 | T189I | T2952I | nonsyn | aCa | aTa | 6503 | 6503 | 1 | 9119-9121 |
Details of the mutation T189I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 6503 | 6503 | All | 0.001244 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1958 | 1958 | B.1.621.1 | 0.990389 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1709 | 1709 | B.1.623 | 0.916845 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 479 | 479 | B.1.1.302 | 0.993776 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 459 | 459 | B.1.574 | 0.987097 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 214 | 214 | B.1.1.159 | 1 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 152 | 152 | B.1.1.7 | 0.000136 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 145 | 145 | B.1.177 | 0.001909 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 141 | 141 | B.1.1.519 | 0.005599 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 138 | 138 | AY.4 | 0.000215 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 120 | 120 | B.1.596 | 0.010457 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 115 | 115 | B.1 | 0.001053 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 86 | 86 | B.1.621 | 0.007613 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 83 | 83 | B.1.110.3 | 0.059626 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 68 | 68 | AY.3 | 0.000676 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 42 | 42 | AY.103 | 0.000261 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 42 | 42 | B.1.617.2 | 0.000158 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 41 | 41 | AY.25 | 0.000247 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 36 | 36 | P.1 | 0.000567 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 34 | 34 | AY.43 | 0.000151 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 30 | 30 | AY.71 | 0.014252 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 29 | 29 | B.1.2 | 0.000255 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 25 | 25 | AY.44 | 0.000152 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 19 | 19 | B.1.294 | 0.612903 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 18 | 18 | B.1.1 | 0.000327 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 18 | 18 | B.1.1.222 | 0.003672 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 16 | 16 | B.1.324 | 0.025682 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 15 | 15 | B.1.404 | 0.019531 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 13 | 13 | B.1.36 | 0.001897 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 13 | 13 | B.1.526 | 0.000306 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 12 | 12 | B.1.1.406 | 0.077922 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 7 | 7 | B.1.221 | 0.000497 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 5 | 5 | B.1.367 | 0.003962 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 5 | 5 | B.1.637 | 0.000365 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 4 | 4 | AY.46.3 | 0.003735 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 4 | 4 | AY.53 | 0.00115 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 4 | 4 | B.1.470 | 0.005618 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 3 | 3 | B.1.1.312 | 0.005736 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 3 | 3 | B.1.232 | 0.001612 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 3 | 3 | B.1.361 | 0.003866 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | B.1.1.485 | 0.033333 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | B.1.36.24 | 0.012346 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.485 | 0.014925 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.506 | 0.02381 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.579 | 0.011236 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | B.4.2 | 0.066667 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 189 | T189I | aCa | aTa | 1 | 1 | P.1.15 | 0.000232 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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