CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = T173T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4173T173TT2936TsynacCacT852484610.9926099071-9073
ORF1ab/nsp4173T173TT2936TsynacCacA8524470.005513849071-9073
ORF1ab/nsp4173T173TT2936TsynacCacG8524160.001877059071-9073

Details of the mutation T173T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4173T173TacCacT84618524All0.001618
ORF1ab/nsp4173T173TacCacA478524All0.000009
ORF1ab/nsp4173T173TacCacG168524All0.000003
ORF1ab/nsp4173T173TacCacT15831584B.1.1.70.001417
ORF1ab/nsp4173T173TacCacA11584B.1.1.70.000001
ORF1ab/nsp4173T173TacCacT11311132B.1.20.009959
ORF1ab/nsp4173T173TacCacA11132B.1.20.000009
ORF1ab/nsp4173T173TacCacT745747B.1.617.20.002805
ORF1ab/nsp4173T173TacCacA2747B.1.617.20.000008
ORF1ab/nsp4173T173TacCacT544549AY.40.000847
ORF1ab/nsp4173T173TacCacA3549AY.40.000005
ORF1ab/nsp4173T173TacCacG2549AY.40.000003
ORF1ab/nsp4173T173TacCacT390390AY.710.185273
ORF1ab/nsp4173T173TacCacT305305AY.340.029574
ORF1ab/nsp4173T173TacCacT296297AY.1030.001838
ORF1ab/nsp4173T173TacCacG1297AY.1030.000006
ORF1ab/nsp4173T173TacCacT252252B.1.5260.005923
ORF1ab/nsp4173T173TacCacT222222AY.250.001335
ORF1ab/nsp4173T173TacCacT197197AY.230.013741
ORF1ab/nsp4173T173TacCacT180183AY.430.000797
ORF1ab/nsp4173T173TacCacA3183AY.430.000013
ORF1ab/nsp4173T173TacCacT160160B.1.3510.004756
ORF1ab/nsp4173T173TacCacT143143B.1.2650.181703
ORF1ab/nsp4173T173TacCacT133133AY.1020.003526
ORF1ab/nsp4173T173TacCacT132133AY.390.003262
ORF1ab/nsp4173T173TacCacA1133AY.390.000025
ORF1ab/nsp4173T173TacCacT129129P.1.10.040978
ORF1ab/nsp4173T173TacCacT116125AY.440.000706
ORF1ab/nsp4173T173TacCacG8125AY.440.000049
ORF1ab/nsp4173T173TacCacA1125AY.440.000006
ORF1ab/nsp4173T173TacCacT107108AY.30.001064
ORF1ab/nsp4173T173TacCacA1108AY.30.00001
ORF1ab/nsp4173T173TacCacT102102AY.750.005714
ORF1ab/nsp4173T173TacCacT101101B.1.6210.00894
ORF1ab/nsp4173T173TacCacT101101P.1.70.032248
ORF1ab/nsp4173T173TacCacT7070B.1.1770.000922
ORF1ab/nsp4173T173TacCacT6464B.1.2400.013796
ORF1ab/nsp4173T173TacCacT6061B.10.00055
ORF1ab/nsp4173T173TacCacA161B.10.000009
ORF1ab/nsp4173T173TacCacT3939AY.50.000805
ORF1ab/nsp4173T173TacCacT3437AY.330.00227
ORF1ab/nsp4173T173TacCacG337AY.330.0002
ORF1ab/nsp4173T173TacCacT3535B.1.258.170.003639
ORF1ab/nsp4173T173TacCacT3335B.1.4290.000776
ORF1ab/nsp4173T173TacCacA235B.1.4290.000047
ORF1ab/nsp4173T173TacCacT3434AY.200.001321
ORF1ab/nsp4173T173TacCacT3333B.1.177.170.027094
ORF1ab/nsp4173T173TacCacT3333B.1.2580.002196
ORF1ab/nsp4173T173TacCacT3131AY.98.10.001501
ORF1ab/nsp4173T173TacCacT3030AY.75.10.005409
ORF1ab/nsp4173T173TacCacT2929AY.990.03043
ORF1ab/nsp4173T173TacCacT2929AY.99.20.002673
ORF1ab/nsp4173T173TacCacT2727P.10.000425
ORF1ab/nsp4173T173TacCacT2525AY.60.001028
ORF1ab/nsp4173T173TacCacT2424B.1.10.000435
ORF1ab/nsp4173T173TacCacT2222AY.260.000623
ORF1ab/nsp4173T173TacCacA1621B.1.1.2140.000887
ORF1ab/nsp4173T173TacCacT521B.1.1.2140.000277
ORF1ab/nsp4173T173TacCacT2020AY.4.20.000434
ORF1ab/nsp4173T173TacCacT2020B.1.36.350.052083
ORF1ab/nsp4173T173TacCacT1919AP.10.028529
ORF1ab/nsp4173T173TacCacT1919AY.1000.000874
ORF1ab/nsp4173T173TacCacT1818AY.1200.000669
ORF1ab/nsp4173T173TacCacT1717AY.4.50.001827
ORF1ab/nsp4173T173TacCacT1717B.1.1.5190.000675
ORF1ab/nsp4173T173TacCacT1016AY.3.10.000853
ORF1ab/nsp4173T173TacCacA616AY.3.10.000512
ORF1ab/nsp4173T173TacCacT1616AY.46.60.001155
ORF1ab/nsp4173T173TacCacT1515B.1.3810.117188
ORF1ab/nsp4173T173TacCacT1515B.1.6370.001096
ORF1ab/nsp4173T173TacCacT1414AY.39.10.000555
ORF1ab/nsp4173T173TacCacT1313AY.910.009496
ORF1ab/nsp4173T173TacCacT1313B.1.621.10.006576
ORF1ab/nsp4173T173TacCacT1212AY.1160.003441
ORF1ab/nsp4173T173TacCacT1212AY.420.000483
ORF1ab/nsp4173T173TacCacT1212B.1.214.20.007194
ORF1ab/nsp4173T173TacCacT1111AY.1190.000388
ORF1ab/nsp4173T173TacCacT1111D.20.000825
ORF1ab/nsp4173T173TacCacT1010AY.1010.004904
ORF1ab/nsp4173T173TacCacT1010AY.470.000311
ORF1ab/nsp4173T173TacCacT1010B.1.220.013175
ORF1ab/nsp4173T173TacCacT1010B.1.2430.000696
ORF1ab/nsp4173T173TacCacT99AY.1130.001282
ORF1ab/nsp4173T173TacCacT99AY.980.000711
ORF1ab/nsp4173T173TacCacT99B.1.3490.006433
ORF1ab/nsp4173T173TacCacT99B.1.360.001313
ORF1ab/nsp4173T173TacCacT99B.1.5240.012658
ORF1ab/nsp4173T173TacCacT99C.370.001045
ORF1ab/nsp4173T173TacCacT88AY.1100.000902
ORF1ab/nsp4173T173TacCacT88AY.1210.001083
ORF1ab/nsp4173T173TacCacT88AY.290.000126
ORF1ab/nsp4173T173TacCacT88B.1.438.10.000858
ORF1ab/nsp4173T173TacCacT77A0.002709
ORF1ab/nsp4173T173TacCacT77B.1.1600.000218
ORF1ab/nsp4173T173TacCacT66AY.1170.000507
ORF1ab/nsp4173T173TacCacT66AY.9.20.00022
ORF1ab/nsp4173T173TacCacT66AY.900.004107
ORF1ab/nsp4173T173TacCacT66B.1.36.220.007246
ORF1ab/nsp4173T173TacCacT66Q.10.000758
ORF1ab/nsp4173T173TacCacT55AY.450.000608
ORF1ab/nsp4173T173TacCacT55AY.46.40.000823
ORF1ab/nsp4173T173TacCacT55AY.70.00098
ORF1ab/nsp4173T173TacCacT55AY.960.010373
ORF1ab/nsp4173T173TacCacT55B.1.1.280.001556
ORF1ab/nsp4173T173TacCacT55B.1.1110.005875
ORF1ab/nsp4173T173TacCacT55B.1.177.810.000947
ORF1ab/nsp4173T173TacCacT55R.10.00045
ORF1ab/nsp4173T173TacCacG240.111111
ORF1ab/nsp4173T173TacCacT240.111111
ORF1ab/nsp4173T173TacCacT44AD.20.000876
ORF1ab/nsp4173T173TacCacT44AY.1180.000251
ORF1ab/nsp4173T173TacCacT44AY.16.10.00188
ORF1ab/nsp4173T173TacCacT44AY.350.000932
ORF1ab/nsp4173T173TacCacT44AY.46.20.002541
ORF1ab/nsp4173T173TacCacT44AY.610.000419
ORF1ab/nsp4173T173TacCacT44AY.9.10.000335
ORF1ab/nsp4173T173TacCacT44B.1.3240.006421
ORF1ab/nsp4173T173TacCacT44C.36.30.002269
ORF1ab/nsp4173T173TacCacT33AY.1080.003308
ORF1ab/nsp4173T173TacCacT33AY.1140.000693
ORF1ab/nsp4173T173TacCacT33AY.300.001187
ORF1ab/nsp4173T173TacCacT33AY.460.000312
ORF1ab/nsp4173T173TacCacT33AY.5.30.001012
ORF1ab/nsp4173T173TacCacT33AY.560.004815
ORF1ab/nsp4173T173TacCacT33AY.650.001599
ORF1ab/nsp4173T173TacCacT33B.1.1.2220.000612
ORF1ab/nsp4173T173TacCacT33B.1.1.2840.000322
ORF1ab/nsp4173T173TacCacT33B.1.1.4860.004732
ORF1ab/nsp4173T173TacCacT33B.1.1.630.001157
ORF1ab/nsp4173T173TacCacT33B.1.3620.004622
ORF1ab/nsp4173T173TacCacT33B.1.4270.000151
ORF1ab/nsp4173T173TacCacT33B.1.5250.000339
ORF1ab/nsp4173T173TacCacA23B.1.5960.000174
ORF1ab/nsp4173T173TacCacT13B.1.5960.000087
ORF1ab/nsp4173T173TacCacT33P.20.00056
ORF1ab/nsp4173T173TacCacT22AY.1060.00067
ORF1ab/nsp4173T173TacCacT22AY.120.000632
ORF1ab/nsp4173T173TacCacT22AY.23.10.000835
ORF1ab/nsp4173T173TacCacT12AY.320.000532
ORF1ab/nsp4173T173TacCacA12AY.320.000532
ORF1ab/nsp4173T173TacCacT22AY.380.000999
ORF1ab/nsp4173T173TacCacT22AY.4.40.000818
ORF1ab/nsp4173T173TacCacT22AY.480.00093
ORF1ab/nsp4173T173TacCacT22AY.540.000191
ORF1ab/nsp4173T173TacCacT22AY.570.001312
ORF1ab/nsp4173T173TacCacT22AY.620.000871
ORF1ab/nsp4173T173TacCacT22AY.7.10.000225
ORF1ab/nsp4173T173TacCacT22AY.700.000417
ORF1ab/nsp4173T173TacCacT22AY.740.000231
ORF1ab/nsp4173T173TacCacT22AY.850.000854
ORF1ab/nsp4173T173TacCacT22AY.880.001768
ORF1ab/nsp4173T173TacCacT22AY.920.000575
ORF1ab/nsp4173T173TacCacT22B.1.1.1570.001826
ORF1ab/nsp4173T173TacCacT22B.1.1.2160.001781
ORF1ab/nsp4173T173TacCacA22B.1.1.2910.001485
ORF1ab/nsp4173T173TacCacT22B.1.1.3050.007722
ORF1ab/nsp4173T173TacCacT22B.1.1.3060.000877
ORF1ab/nsp4173T173TacCacT22B.1.1.3170.000823
ORF1ab/nsp4173T173TacCacT22B.1.1.4110.029412
ORF1ab/nsp4173T173TacCacT22B.1.1.4340.000697
ORF1ab/nsp4173T173TacCacT22B.1.1280.001271
ORF1ab/nsp4173T173TacCacT22B.1.1310.017544
ORF1ab/nsp4173T173TacCacT22B.1.160.150.009901
ORF1ab/nsp4173T173TacCacT22B.1.160.300.005952
ORF1ab/nsp4173T173TacCacT22B.1.177.330.003289
ORF1ab/nsp4173T173TacCacT22B.1.177.620.002384
ORF1ab/nsp4173T173TacCacT22B.1.258.110.000793
ORF1ab/nsp4173T173TacCacT22B.1.36.290.001035
ORF1ab/nsp4173T173TacCacT22B.1.5950.000522
ORF1ab/nsp4173T173TacCacA22B.60.00182
ORF1ab/nsp4173T173TacCacT22N.50.003534
ORF1ab/nsp4173T173TacCacT22P.1.150.000465
ORF1ab/nsp4173T173TacCacT22P.1.170.000324
ORF1ab/nsp4173T173TacCacT22P.1.60.003891
ORF1ab/nsp4173T173TacCacT22Q.80.00033
ORF1ab/nsp4173T173TacCacT11A.2.20.001689
ORF1ab/nsp4173T173TacCacT11A.23.10.000704
ORF1ab/nsp4173T173TacCacT11AE.80.000489
ORF1ab/nsp4173T173TacCacT11AM.40.003571
ORF1ab/nsp4173T173TacCacT11AU.30.00211
ORF1ab/nsp4173T173TacCacT11AY.1090.00074
ORF1ab/nsp4173T173TacCacT11AY.116.10.000311
ORF1ab/nsp4173T173TacCacT11AY.120.10.000321
ORF1ab/nsp4173T173TacCacT11AY.130.000161
ORF1ab/nsp4173T173TacCacT11AY.20.000356
ORF1ab/nsp4173T173TacCacT11AY.270.000065
ORF1ab/nsp4173T173TacCacT11AY.34.10.00051
ORF1ab/nsp4173T173TacCacT11AY.360.000148
ORF1ab/nsp4173T173TacCacT11AY.370.000316
ORF1ab/nsp4173T173TacCacT11AY.4.2.10.000149
ORF1ab/nsp4173T173TacCacT11AY.46.10.001027
ORF1ab/nsp4173T173TacCacT11AY.46.50.000198
ORF1ab/nsp4173T173TacCacT11AY.530.000288
ORF1ab/nsp4173T173TacCacT11AY.580.000907
ORF1ab/nsp4173T173TacCacT11AY.600.000938
ORF1ab/nsp4173T173TacCacT11AY.670.000464
ORF1ab/nsp4173T173TacCacT11AY.730.000665
ORF1ab/nsp4173T173TacCacT11AY.800.001129
ORF1ab/nsp4173T173TacCacT11AY.840.000437
ORF1ab/nsp4173T173TacCacT11AY.860.00083
ORF1ab/nsp4173T173TacCacT11AY.90.000068
ORF1ab/nsp4173T173TacCacA11B0.000128
ORF1ab/nsp4173T173TacCacT11B.1.1.1230.017857
ORF1ab/nsp4173T173TacCacT11B.1.1.1760.000439
ORF1ab/nsp4173T173TacCacT11B.1.1.2430.004082
ORF1ab/nsp4173T173TacCacT11B.1.1.250.000569
ORF1ab/nsp4173T173TacCacT11B.1.1.2650.003155
ORF1ab/nsp4173T173TacCacT11B.1.1.2940.001266
ORF1ab/nsp4173T173TacCacT11B.1.1.3260.001761
ORF1ab/nsp4173T173TacCacT11B.1.1.3330.001076
ORF1ab/nsp4173T173TacCacT11B.1.1.370.000193
ORF1ab/nsp4173T173TacCacT11B.1.1.4660.008696
ORF1ab/nsp4173T173TacCacT11B.1.1.5230.001563
ORF1ab/nsp4173T173TacCacT11B.1.110.30.000718
ORF1ab/nsp4173T173TacCacT11B.1.160.280.002924
ORF1ab/nsp4173T173TacCacT11B.1.160.80.001289
ORF1ab/nsp4173T173TacCacT11B.1.177.210.000076
ORF1ab/nsp4173T173TacCacT11B.1.177.430.001477
ORF1ab/nsp4173T173TacCacT11B.1.177.440.000519
ORF1ab/nsp4173T173TacCacT11B.1.177.530.002392
ORF1ab/nsp4173T173TacCacT11B.1.177.580.001332
ORF1ab/nsp4173T173TacCacT11B.1.177.860.000183
ORF1ab/nsp4173T173TacCacT11B.1.177.90.001332
ORF1ab/nsp4173T173TacCacA11B.1.1920.009259
ORF1ab/nsp4173T173TacCacT11B.1.2080.04
ORF1ab/nsp4173T173TacCacT11B.1.2210.000071
ORF1ab/nsp4173T173TacCacT11B.1.2340.000132
ORF1ab/nsp4173T173TacCacT11B.1.258.210.007752
ORF1ab/nsp4173T173TacCacT11B.1.3400.004292
ORF1ab/nsp4173T173TacCacT11B.1.351.30.000876
ORF1ab/nsp4173T173TacCacT11B.1.36.10.00114
ORF1ab/nsp4173T173TacCacT11B.1.36.80.001
ORF1ab/nsp4173T173TacCacT11B.1.3670.000792
ORF1ab/nsp4173T173TacCacT11B.1.3960.000706
ORF1ab/nsp4173T173TacCacT11B.1.4150.014286
ORF1ab/nsp4173T173TacCacT11B.1.438.40.021277
ORF1ab/nsp4173T173TacCacT11B.1.466.20.000391
ORF1ab/nsp4173T173TacCacT11B.1.4970.000315
ORF1ab/nsp4173T173TacCacT11B.1.4990.00105
ORF1ab/nsp4173T173TacCacT11B.1.5050.004386
ORF1ab/nsp4173T173TacCacT11B.1.5230.002451
ORF1ab/nsp4173T173TacCacT11B.1.5330.009615
ORF1ab/nsp4173T173TacCacT11B.1.5610.000397
ORF1ab/nsp4173T173TacCacT11B.1.5650.00081
ORF1ab/nsp4173T173TacCacT11B.1.5760.000907
ORF1ab/nsp4173T173TacCacT11B.1.6100.003546
ORF1ab/nsp4173T173TacCacT11B.1.617.10.000129
ORF1ab/nsp4173T173TacCacT11B.1.6230.000536
ORF1ab/nsp4173T173TacCacT11B.1.6280.000352
ORF1ab/nsp4173T173TacCacT11B.1.6360.006711
ORF1ab/nsp4173T173TacCacT11B.110.005128
ORF1ab/nsp4173T173TacCacT11B.30.000831
ORF1ab/nsp4173T173TacCacT11B.550.00295
ORF1ab/nsp4173T173TacCacT11C.10.002392
ORF1ab/nsp4173T173TacCacT11C.160.00106
ORF1ab/nsp4173T173TacCacT11C.30.007634
ORF1ab/nsp4173T173TacCacT11C.360.000911
ORF1ab/nsp4173T173TacCacT11D.30.005917
ORF1ab/nsp4173T173TacCacT11P.1.140.000048
ORF1ab/nsp4173T173TacCacT11P.1.160.000374
ORF1ab/nsp4173T173TacCacT11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.