CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = T143T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4143T143TT2906TsynacTacG837478590.93858981-8983
ORF1ab/nsp4143T143TT2906TsynacTacA83743440.04107958981-8983
ORF1ab/nsp4143T143TT2906TsynacTacC83741710.02042038981-8983

Details of the mutation T143T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4143T143TacTacG78598374All0.001503
ORF1ab/nsp4143T143TacTacA3448374All0.000066
ORF1ab/nsp4143T143TacTacC1718374All0.000033
ORF1ab/nsp4143T143TacTacG62686268B.1.2210.445234
ORF1ab/nsp4143T143TacTacG11881188B.1.221.30.99
ORF1ab/nsp4143T143TacTacA239281B.1.1.70.000214
ORF1ab/nsp4143T143TacTacC38281B.1.1.70.000034
ORF1ab/nsp4143T143TacTacG4281B.1.1.70.000004
ORF1ab/nsp4143T143TacTacG242242B.1.221.20.971888
ORF1ab/nsp4143T143TacTacG5663B.10.000513
ORF1ab/nsp4143T143TacTacA663B.10.000055
ORF1ab/nsp4143T143TacTacC163B.10.000009
ORF1ab/nsp4143T143TacTacA1729B.1.617.20.000064
ORF1ab/nsp4143T143TacTacC1029B.1.617.20.000038
ORF1ab/nsp4143T143TacTacG229B.1.617.20.000008
ORF1ab/nsp4143T143TacTacA2325AY.9.10.001926
ORF1ab/nsp4143T143TacTacC225AY.9.10.000167
ORF1ab/nsp4143T143TacTacG1225B.1.1770.000158
ORF1ab/nsp4143T143TacTacA1125B.1.1770.000145
ORF1ab/nsp4143T143TacTacC225B.1.1770.000026
ORF1ab/nsp4143T143TacTacC2323AY.300.009102
ORF1ab/nsp4143T143TacTacC1919AY.75.10.003426
ORF1ab/nsp4143T143TacTacG1818AY.1030.000112
ORF1ab/nsp4143T143TacTacC1515B.1.177.770.010893
ORF1ab/nsp4143T143TacTacA813P.10.000126
ORF1ab/nsp4143T143TacTacC313P.10.000047
ORF1ab/nsp4143T143TacTacG213P.10.000032
ORF1ab/nsp4143T143TacTacC1010AY.30.000099
ORF1ab/nsp4143T143TacTacG710B.1.10.000127
ORF1ab/nsp4143T143TacTacA210B.1.10.000036
ORF1ab/nsp4143T143TacTacC110B.1.10.000018
ORF1ab/nsp4143T143TacTacG910B.1.2100.01919
ORF1ab/nsp4143T143TacTacC110B.1.2100.002132
ORF1ab/nsp4143T143TacTacC79B.1.4290.000165
ORF1ab/nsp4143T143TacTacG29B.1.4290.000047
ORF1ab/nsp4143T143TacTacG77B.1.160.320.030043
ORF1ab/nsp4143T143TacTacG77B.1.36.10.007982
ORF1ab/nsp4143T143TacTacG37Q.10.000379
ORF1ab/nsp4143T143TacTacC37Q.10.000379
ORF1ab/nsp4143T143TacTacA17Q.10.000126
ORF1ab/nsp4143T143TacTacG46B.1.1600.000125
ORF1ab/nsp4143T143TacTacA26B.1.1600.000062
ORF1ab/nsp4143T143TacTacA56B.1.5260.000118
ORF1ab/nsp4143T143TacTacC16B.1.5260.000024
ORF1ab/nsp4143T143TacTacA35AY.1000.000138
ORF1ab/nsp4143T143TacTacC25AY.1000.000092
ORF1ab/nsp4143T143TacTacC45AY.40.000006
ORF1ab/nsp4143T143TacTacA15AY.40.000002
ORF1ab/nsp4143T143TacTacA35AY.440.000018
ORF1ab/nsp4143T143TacTacC25AY.440.000012
ORF1ab/nsp4143T143TacTacC35B.1.20.000026
ORF1ab/nsp4143T143TacTacG15B.1.20.000009
ORF1ab/nsp4143T143TacTacA15B.1.20.000009
ORF1ab/nsp4143T143TacTacC44B.1.1.2770.003035
ORF1ab/nsp4143T143TacTacC33AY.98.10.000145
ORF1ab/nsp4143T143TacTacA22A.210.00554
ORF1ab/nsp4143T143TacTacC22AY.200.000078
ORF1ab/nsp4143T143TacTacG12AY.260.000028
ORF1ab/nsp4143T143TacTacC12AY.260.000028
ORF1ab/nsp4143T143TacTacA22AY.430.000009
ORF1ab/nsp4143T143TacTacG12AY.610.000105
ORF1ab/nsp4143T143TacTacC12AY.610.000105
ORF1ab/nsp4143T143TacTacG22B.1.1.3510.005587
ORF1ab/nsp4143T143TacTacC22B.1.177.210.000153
ORF1ab/nsp4143T143TacTacG22B.1.177.860.000367
ORF1ab/nsp4143T143TacTacA22B.1.36.290.001035
ORF1ab/nsp4143T143TacTacC22B.1.3990.003868
ORF1ab/nsp4143T143TacTacA12B.1.4270.00005
ORF1ab/nsp4143T143TacTacC12B.1.4270.00005
ORF1ab/nsp4143T143TacTacA22B.1.5060.047619
ORF1ab/nsp4143T143TacTacC22B.1.5750.000607
ORF1ab/nsp4143T143TacTacA22C.320.046512
ORF1ab/nsp4143T143TacTacA11A.20.000662
ORF1ab/nsp4143T143TacTacG11AY.1140.000231
ORF1ab/nsp4143T143TacTacC11AY.1160.000287
ORF1ab/nsp4143T143TacTacA11AY.210.001898
ORF1ab/nsp4143T143TacTacG11AY.230.00007
ORF1ab/nsp4143T143TacTacA11AY.23.10.000417
ORF1ab/nsp4143T143TacTacA11AY.350.000233
ORF1ab/nsp4143T143TacTacA11AY.50.000021
ORF1ab/nsp4143T143TacTacC11AY.5.30.000337
ORF1ab/nsp4143T143TacTacC11AY.520.000814
ORF1ab/nsp4143T143TacTacG11AY.620.000436
ORF1ab/nsp4143T143TacTacA11AY.90.000068
ORF1ab/nsp4143T143TacTacG11B.1.1.1620.029412
ORF1ab/nsp4143T143TacTacC11B.1.1.2320.001815
ORF1ab/nsp4143T143TacTacA11B.1.1.280.000311
ORF1ab/nsp4143T143TacTacG11B.1.1.3020.002075
ORF1ab/nsp4143T143TacTacG11B.1.1.390.00051
ORF1ab/nsp4143T143TacTacG11B.1.1.510.001718
ORF1ab/nsp4143T143TacTacA11B.1.1.700.000341
ORF1ab/nsp4143T143TacTacG11B.1.160.160.000929
ORF1ab/nsp4143T143TacTacG11B.1.160.260.002421
ORF1ab/nsp4143T143TacTacG11B.1.177.120.000152
ORF1ab/nsp4143T143TacTacG11B.1.177.430.001477
ORF1ab/nsp4143T143TacTacG11B.1.177.440.000519
ORF1ab/nsp4143T143TacTacG11B.1.177.730.000566
ORF1ab/nsp4143T143TacTacG11B.1.177.810.000189
ORF1ab/nsp4143T143TacTacG11B.1.177.840.006667
ORF1ab/nsp4143T143TacTacG11B.1.2430.00007
ORF1ab/nsp4143T143TacTacG11B.1.2580.000067
ORF1ab/nsp4143T143TacTacG11B.1.258.110.000396
ORF1ab/nsp4143T143TacTacC11B.1.3510.00003
ORF1ab/nsp4143T143TacTacA11B.1.36.80.001
ORF1ab/nsp4143T143TacTacG11B.1.4730.019231
ORF1ab/nsp4143T143TacTacG11B.1.6090.000479
ORF1ab/nsp4143T143TacTacG11B.1.6210.000089
ORF1ab/nsp4143T143TacTacC11C.370.000116
ORF1ab/nsp4143T143TacTacA11D.20.000075
ORF1ab/nsp4143T143TacTacA11Q.80.000165