CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = S76S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp476S76SS2839SsynagCagT19381193800.9999488780-8782
ORF1ab/nsp476S76SS2839SsynAGCTCA1938110.00005159698780-8782

Details of the mutation S76S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp476S76SagCagT1938019381All0.003707
ORF1ab/nsp476S76SAGCTCA119381All0
ORF1ab/nsp476S76SagCagT34353435A.10.968151
ORF1ab/nsp476S76SagCagT23672367A0.916022
ORF1ab/nsp476S76SagCagT18001800A.2.50.898204
ORF1ab/nsp476S76SagCagT14411441A.20.953673
ORF1ab/nsp476S76SagCagT13871387A.23.10.976761
ORF1ab/nsp476S76SagCagT12901290AY.40.002008
ORF1ab/nsp476S76SagCagT611611A.2.5.20.960692
ORF1ab/nsp476S76SagCagT572572A.270.94702
ORF1ab/nsp476S76SagCagT570570A.2.20.962838
ORF1ab/nsp476S76SagCagT489489A.50.940385
ORF1ab/nsp476S76SagCagT465465A.30.974843
ORF1ab/nsp476S76SagCagT444444B.1.20.00391
ORF1ab/nsp476S76SagCagT382382B.1.1.70.000342
ORF1ab/nsp476S76SagCagT372372A.280.984127
ORF1ab/nsp476S76SagCagT319319A.210.883657
ORF1ab/nsp476S76SagCagT289289A.2.40.973064
ORF1ab/nsp476S76SagCagT207207A.2.30.981043
ORF1ab/nsp476S76SagCagT202202A.2.5.10.971154
ORF1ab/nsp476S76SagCagT195195A.61
ORF1ab/nsp476S76SagCagT186186B.10.001704
ORF1ab/nsp476S76SagCagT178178B0.022751
ORF1ab/nsp476S76SagCagT165165A.290.87766
ORF1ab/nsp476S76SagCagT125125B.1.617.20.000471
ORF1ab/nsp476S76SagCagT103103P.1.140.004924
ORF1ab/nsp476S76SagCagT100100A.190.943396
ORF1ab/nsp476S76SagCagT9595A.2.5.30.979381
ORF1ab/nsp476S76SagCagT9494A.230.989474
ORF1ab/nsp476S76SagCagT9191AY.30.000905
ORF1ab/nsp476S76SagCagT7878A.41
ORF1ab/nsp476S76SagCagT6363A.151
ORF1ab/nsp476S76SagCagT6262A.161
ORF1ab/nsp476S76SagCagT5959AY.460.006141
ORF1ab/nsp476S76SagCagT5555AY.440.000335
ORF1ab/nsp476S76SagCagT5454B.1.1.3490.556701
ORF1ab/nsp476S76SagCagT5353A.250.963636
ORF1ab/nsp476S76SagCagT4444AY.330.002938
ORF1ab/nsp476S76SagCagT4040B.1.10.000726
ORF1ab/nsp476S76SagCagT3737AM.40.132143
ORF1ab/nsp476S76SagCagT3535AY.1030.000217
ORF1ab/nsp476S76SagCagT3333AY.750.001849
ORF1ab/nsp476S76SagCagT2828B.1.5260.000658
ORF1ab/nsp476S76SagCagT2828C.370.00325
ORF1ab/nsp476S76SagCagT2626AY.430.000115
ORF1ab/nsp476S76SagCagT2525B.1.1.5190.000993
ORF1ab/nsp476S76SagCagT2222A.91
ORF1ab/nsp476S76SagCagT2121B.1.1.3180.006337
ORF1ab/nsp476S76SagCagT2121B.1.1.4640.030928
ORF1ab/nsp476S76SagCagT2020AY.80.012121
ORF1ab/nsp476S76SagCagT2020AY.9.20.000735
ORF1ab/nsp476S76SagCagT1919A.180.95
ORF1ab/nsp476S76SagCagT1819AY.250.000108
ORF1ab/nsp476S76SAGCTCA119AY.250.000006
ORF1ab/nsp476S76SagCagT1818B.1.1770.000237
ORF1ab/nsp476S76SagCagT1717A.111
ORF1ab/nsp476S76SagCagT1616B.1.2340.002111
ORF1ab/nsp476S76SagCagT1515A.221
ORF1ab/nsp476S76SagCagT1515B.1.4290.000353
ORF1ab/nsp476S76SagCagT1414A.241
ORF1ab/nsp476S76SagCagT1414AY.300.00554
ORF1ab/nsp476S76SagCagT1414B.1.6210.001239
ORF1ab/nsp476S76SagCagT1313A.261
ORF1ab/nsp476S76SagCagT1313AY.390.000321
ORF1ab/nsp476S76SagCagT1111A.171
ORF1ab/nsp476S76SagCagT1111A.70.611111
ORF1ab/nsp476S76SagCagT1010AY.4.20.000217
ORF1ab/nsp476S76SagCagT99AY.100.004769
ORF1ab/nsp476S76SagCagT99B.1.360.001313
ORF1ab/nsp476S76SagCagT88B.1.3510.000238
ORF1ab/nsp476S76SagCagT88P.1.170.001294
ORF1ab/nsp476S76SagCagT77A.301
ORF1ab/nsp476S76SagCagT77AY.1170.000592
ORF1ab/nsp476S76SagCagT77AY.290.00011
ORF1ab/nsp476S76SagCagT77AY.3.10.000597
ORF1ab/nsp476S76SagCagT77AY.9.10.000586
ORF1ab/nsp476S76SagCagT66A.121
ORF1ab/nsp476S76SagCagT66AY.770.006764
ORF1ab/nsp476S76SagCagT66B.1.1570.01791
ORF1ab/nsp476S76SagCagT66B.1.2400.001293
ORF1ab/nsp476S76SagCagT66P.10.000095
ORF1ab/nsp476S76SagCagT66P.1.150.001394
ORF1ab/nsp476S76SagCagT55AY.470.000156
ORF1ab/nsp476S76SagCagT55B.1.1.280.001556
ORF1ab/nsp476S76SagCagT55B.1.1390.003666
ORF1ab/nsp476S76SagCagT55B.1.1600.000156
ORF1ab/nsp476S76SagCagT55B.1.5960.000436
ORF1ab/nsp476S76SagCagT55R.10.00045
ORF1ab/nsp476S76SagCagT44AY.230.000279
ORF1ab/nsp476S76SagCagT44AY.260.000113
ORF1ab/nsp476S76SagCagT44AY.450.000487
ORF1ab/nsp476S76SagCagT44AY.610.000419
ORF1ab/nsp476S76SagCagT44B.1.1.1610.014134
ORF1ab/nsp476S76SagCagT44B.1.2390.004884
ORF1ab/nsp476S76SagCagT44B.1.2600.013378
ORF1ab/nsp476S76SagCagT44B.1.617.10.000516
ORF1ab/nsp476S76SagCagT33AY.1210.000406
ORF1ab/nsp476S76SagCagT33AY.320.001597
ORF1ab/nsp476S76SagCagT33AY.46.40.000494
ORF1ab/nsp476S76SagCagT33AY.50.000062
ORF1ab/nsp476S76SagCagT33AY.60.000123
ORF1ab/nsp476S76SagCagT33AY.650.001599
ORF1ab/nsp476S76SagCagT33AY.700.000626
ORF1ab/nsp476S76SagCagT33AY.98.10.000145
ORF1ab/nsp476S76SagCagT33B.1.1.2790.003363
ORF1ab/nsp476S76SagCagT33B.1.1240.023438
ORF1ab/nsp476S76SagCagT33B.1.2430.000209
ORF1ab/nsp476S76SagCagT33B.1.2580.0002
ORF1ab/nsp476S76SagCagT33B.1.3110.000824
ORF1ab/nsp476S76SagCagT33B.1.5760.00272
ORF1ab/nsp476S76SagCagT33B.550.00885
ORF1ab/nsp476S76SagCagT33M.20.25
ORF1ab/nsp476S76SagCagT33Q.70.003333
ORF1ab/nsp476S76SagCagT33Q.80.000495
ORF1ab/nsp476S76SagCagT22AY.1110.000366
ORF1ab/nsp476S76SagCagT22AY.1190.000071
ORF1ab/nsp476S76SagCagT22AY.1200.000074
ORF1ab/nsp476S76SagCagT22AY.20.000712
ORF1ab/nsp476S76SagCagT22AY.200.000078
ORF1ab/nsp476S76SagCagT22AY.4.50.000215
ORF1ab/nsp476S76SagCagT22AY.46.10.002053
ORF1ab/nsp476S76SagCagT22AY.46.50.000397
ORF1ab/nsp476S76SagCagT22AY.46.60.000144
ORF1ab/nsp476S76SagCagT22AY.5.30.000675
ORF1ab/nsp476S76SagCagT22AY.5.40.000553
ORF1ab/nsp476S76SagCagT22AY.740.000231
ORF1ab/nsp476S76SagCagT22AY.840.000875
ORF1ab/nsp476S76SagCagT22B.1.1.10.000653
ORF1ab/nsp476S76SagCagT22B.1.1.1530.002191
ORF1ab/nsp476S76SagCagT22B.1.1.2220.000408
ORF1ab/nsp476S76SagCagT22B.1.1.2430.008163
ORF1ab/nsp476S76SagCagT22B.1.1.2650.006309
ORF1ab/nsp476S76SagCagT22B.1.1130.03125
ORF1ab/nsp476S76SagCagT22B.1.177.70.00033
ORF1ab/nsp476S76SagCagT22B.1.2210.000142
ORF1ab/nsp476S76SagCagT22B.1.2320.001075
ORF1ab/nsp476S76SagCagT22B.1.258.140.001961
ORF1ab/nsp476S76SagCagT22B.1.3440.016393
ORF1ab/nsp476S76SagCagT22B.1.3490.00143
ORF1ab/nsp476S76SagCagT22B.1.3610.002577
ORF1ab/nsp476S76SagCagT22B.1.5250.000226
ORF1ab/nsp476S76SagCagT22B.1.9.50.011364
ORF1ab/nsp476S76SagCagT22B.1.910.004149
ORF1ab/nsp476S76SagCagT22B.400.000729
ORF1ab/nsp476S76SagCagT22P.1.70.000639
ORF1ab/nsp476S76SagCagT22Q.20.001227
ORF1ab/nsp476S76SagCagT22Y.10.025641
ORF1ab/nsp476S76SagCagT11AD.20.000219
ORF1ab/nsp476S76SagCagT11AY.1000.000046
ORF1ab/nsp476S76SagCagT11AY.1060.000335
ORF1ab/nsp476S76SagCagT11AY.110.001339
ORF1ab/nsp476S76SagCagT11AY.1130.000142
ORF1ab/nsp476S76SagCagT11AY.1160.000287
ORF1ab/nsp476S76SagCagT11AY.120.10.000321
ORF1ab/nsp476S76SagCagT11AY.240.000431
ORF1ab/nsp476S76SagCagT11AY.34.10.00051
ORF1ab/nsp476S76SagCagT11AY.360.000148
ORF1ab/nsp476S76SagCagT11AY.380.000499
ORF1ab/nsp476S76SagCagT11AY.4.40.000409
ORF1ab/nsp476S76SagCagT11AY.420.00004
ORF1ab/nsp476S76SagCagT11AY.46.20.000635
ORF1ab/nsp476S76SagCagT11AY.580.000907
ORF1ab/nsp476S76SagCagT11AY.690.000187
ORF1ab/nsp476S76SagCagT11AY.75.10.00018
ORF1ab/nsp476S76SagCagT11AY.810.001992
ORF1ab/nsp476S76SagCagT11AY.990.001049
ORF1ab/nsp476S76SagCagT11AY.99.20.000092
ORF1ab/nsp476S76SagCagT11B.1.1.2140.000055
ORF1ab/nsp476S76SagCagT11B.1.1.2180.007692
ORF1ab/nsp476S76SagCagT11B.1.1.2200.001859
ORF1ab/nsp476S76SagCagT11B.1.1.2410.00207
ORF1ab/nsp476S76SagCagT11B.1.1.2630.001558
ORF1ab/nsp476S76SagCagT11B.1.1.270.00565
ORF1ab/nsp476S76SagCagT11B.1.1.2840.000107
ORF1ab/nsp476S76SagCagT11B.1.1.3040.002809
ORF1ab/nsp476S76SagCagT11B.1.1.3780.007299
ORF1ab/nsp476S76SagCagT11B.1.1.4340.000349
ORF1ab/nsp476S76SagCagT11B.1.160.330.004425
ORF1ab/nsp476S76SagCagT11B.1.160.70.002079
ORF1ab/nsp476S76SagCagT11B.1.177.100.000878
ORF1ab/nsp476S76SagCagT11B.1.177.40.000211
ORF1ab/nsp476S76SagCagT11B.1.177.440.000519
ORF1ab/nsp476S76SagCagT11B.1.177.450.000381
ORF1ab/nsp476S76SagCagT11B.1.177.520.001757
ORF1ab/nsp476S76SagCagT11B.1.177.640.090909
ORF1ab/nsp476S76SagCagT11B.1.177.770.000726
ORF1ab/nsp476S76SagCagT11B.1.2360.002053
ORF1ab/nsp476S76SagCagT11B.1.2470.014925
ORF1ab/nsp476S76SagCagT11B.1.258.170.000104
ORF1ab/nsp476S76SagCagT11B.1.258.30.001675
ORF1ab/nsp476S76SagCagT11B.1.2790.000514
ORF1ab/nsp476S76SagCagT11B.1.3190.003049
ORF1ab/nsp476S76SagCagT11B.1.36.220.001208
ORF1ab/nsp476S76SagCagT11B.1.3690.000285
ORF1ab/nsp476S76SagCagT11B.1.4270.00005
ORF1ab/nsp476S76SagCagT11B.1.438.10.000107
ORF1ab/nsp476S76SagCagT11B.1.4390.005917
ORF1ab/nsp476S76SagCagT11B.1.4500.011364
ORF1ab/nsp476S76SagCagT11B.1.4680.005714
ORF1ab/nsp476S76SagCagT11B.1.4970.000315
ORF1ab/nsp476S76SagCagT11B.1.5230.002451
ORF1ab/nsp476S76SagCagT11B.1.5750.000303
ORF1ab/nsp476S76SagCagT11B.1.5820.000491
ORF1ab/nsp476S76SagCagT11B.1.5950.000261
ORF1ab/nsp476S76SagCagT11B.1.5990.00365
ORF1ab/nsp476S76SagCagT11B.1.6090.000479
ORF1ab/nsp476S76SagCagT11B.1.6190.000871
ORF1ab/nsp476S76SagCagT11B.1.6310.003367
ORF1ab/nsp476S76SagCagT11B.1.6370.000073
ORF1ab/nsp476S76SagCagT11B.370.028571
ORF1ab/nsp476S76SagCagT11B.390.002331
ORF1ab/nsp476S76SagCagT11B.40.002208
ORF1ab/nsp476S76SagCagT11B.4.70.010101
ORF1ab/nsp476S76SagCagT11C.36.30.000567
ORF1ab/nsp476S76SagCagT11C.60.037037
ORF1ab/nsp476S76SagCagT11D.20.000075
ORF1ab/nsp476S76SagCagT11N.50.001767
ORF1ab/nsp476S76SagCagT11N.60.007092
ORF1ab/nsp476S76SagCagT11P.1.10.000318
ORF1ab/nsp476S76SagCagT11P.1.120.000484
ORF1ab/nsp476S76SagCagT11P.1.160.000374
ORF1ab/nsp476S76SagCagT11P.20.000187
ORF1ab/nsp476S76SagCagT11P.30.001595
ORF1ab/nsp476S76SagCagT11Q.40.000455