CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = S76R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp476S76RS2839RnonsynAgcCgc65370.5692318780-8782
ORF1ab/nsp476S76RS2839RnonsynagCagA65260.48780-8782
ORF1ab/nsp476S76RS2839RnonsynAgCCgT6510.01538468780-8782
ORF1ab/nsp476S76RS2839RnonsynagCagG6510.01538468780-8782

Details of the mutation S76R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp476S76RAgcCgc3765All0.000007
ORF1ab/nsp476S76RagCagA2665All0.000005
ORF1ab/nsp476S76RagCagG165All0
ORF1ab/nsp476S76RAgCCgT165All0
ORF1ab/nsp476S76RAgcCgc3333AY.440.000201
ORF1ab/nsp476S76RagCagA710AY.40.000011
ORF1ab/nsp476S76RAgcCgc210AY.40.000003
ORF1ab/nsp476S76RAgCCgT110AY.40.000002
ORF1ab/nsp476S76RagCagA230.111111
ORF1ab/nsp476S76RagCagG130.055556
ORF1ab/nsp476S76RagCagA22AY.1200.000074
ORF1ab/nsp476S76RAgcCgc12B.1.1.70.000001
ORF1ab/nsp476S76RagCagA12B.1.1.70.000001
ORF1ab/nsp476S76RagCagA22B.1.617.20.000008
ORF1ab/nsp476S76RagCagA11A.10.000282
ORF1ab/nsp476S76RagCagA11AY.1030.000006
ORF1ab/nsp476S76RagCagA11AY.200.000039
ORF1ab/nsp476S76RagCagA11AY.240.000431
ORF1ab/nsp476S76RagCagA11AY.360.000148
ORF1ab/nsp476S76RagCagA11AY.680.000274
ORF1ab/nsp476S76RagCagA11B.10.000009
ORF1ab/nsp476S76RagCagA11B.1.1.250.000569
ORF1ab/nsp476S76RagCagA11B.1.1.3350.012987
ORF1ab/nsp476S76RAgcCgc11B.1.4970.000315
ORF1ab/nsp476S76RagCagA11C.10.002392
ORF1ab/nsp476S76RagCagA11D.20.000075
ORF1ab/nsp476S76RagCagA11P.1.10.000318