CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = S395T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4395S395TS3158TnonsynaGtaCt19580195780.9998989737-9739
ORF1ab/nsp4395S395TS3158TnonsynaGTaCG1958020.0001021459737-9739

Details of the mutation S395T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4395S395TaGtaCt1957819580All0.003745
ORF1ab/nsp4395S395TaGTaCG219580All0
ORF1ab/nsp4395S395TaGtaCt1913819138B.1.4270.966419
ORF1ab/nsp4395S395TaGtaCt254254B.10.002327
ORF1ab/nsp4395S395TaGtaCt5555B.1.4290.001294
ORF1ab/nsp4395S395TaGtaCt1616B.1.5950.004175
ORF1ab/nsp4395S395TaGtaCt1414B.1.3360.034146
ORF1ab/nsp4395S395TaGtaCt1212B.1.1.4160.01086
ORF1ab/nsp4395S395TaGtaCt1111B.1.575.10.026829
ORF1ab/nsp4395S395TaGtaCt1010B.1.20.000088
ORF1ab/nsp4395S395TaGtaCt77B.1.1.1920.016166
ORF1ab/nsp4395S395TaGtaCt77B.1.1.2200.013011
ORF1ab/nsp4395S395TaGtaCt66B.1.10.000109
ORF1ab/nsp4395S395TaGtaCt66B.1.5960.000523
ORF1ab/nsp4395S395TaGtaCt55B.1.1.3350.064935
ORF1ab/nsp4395S395TaGTaCG220.111111
ORF1ab/nsp4395S395TaGtaCt22B.1.2340.000264
ORF1ab/nsp4395S395TaGtaCt22B.1.3670.001585
ORF1ab/nsp4395S395TaGtaCt22B.1.6230.001073
ORF1ab/nsp4395S395TaGtaCt22B.1.6370.000146
ORF1ab/nsp4395S395TaGtaCt11AY.30.00001
ORF1ab/nsp4395S395TaGtaCt11AY.40.000002
ORF1ab/nsp4395S395TaGtaCt11B0.000128
ORF1ab/nsp4395S395TaGtaCt11B.1.1.2690.001353
ORF1ab/nsp4395S395TaGtaCt11B.1.1.4070.041667
ORF1ab/nsp4395S395TaGtaCt11B.1.1.5170.006803
ORF1ab/nsp4395S395TaGtaCt11B.1.1.5190.00004
ORF1ab/nsp4395S395TaGtaCt11B.1.1.5280.004808
ORF1ab/nsp4395S395TaGtaCt11B.1.1.70.000001
ORF1ab/nsp4395S395TaGtaCt11B.1.1190.010526
ORF1ab/nsp4395S395TaGtaCt11B.1.1260.001276
ORF1ab/nsp4395S395TaGtaCt11B.1.1570.002985
ORF1ab/nsp4395S395TaGtaCt11B.1.177.70.000165
ORF1ab/nsp4395S395TaGtaCt11B.1.177.730.000566
ORF1ab/nsp4395S395TaGtaCt11B.1.1900.01
ORF1ab/nsp4395S395TaGtaCt11B.1.2410.000812
ORF1ab/nsp4395S395TaGtaCt11B.1.2800.007143
ORF1ab/nsp4395S395TaGtaCt11B.1.2810.021739
ORF1ab/nsp4395S395TaGtaCt11B.1.2890.00266
ORF1ab/nsp4395S395TaGtaCt11B.1.3500.002933
ORF1ab/nsp4395S395TaGtaCt11B.1.3750.00082
ORF1ab/nsp4395S395TaGtaCt11B.1.5500.013699
ORF1ab/nsp4395S395TaGtaCt11B.1.5750.000303
ORF1ab/nsp4395S395TaGtaCt11B.1.5760.000907
ORF1ab/nsp4395S395TaGtaCt11B.1.5770.000687
ORF1ab/nsp4395S395TaGtaCt11B.1.5800.004065
ORF1ab/nsp4395S395TaGtaCt11B.1.940.027027
ORF1ab/nsp4395S395TaGtaCt11B.30.000831
ORF1ab/nsp4395S395TaGtaCt11P.1.10.000318