CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 34 | S34F | S2797F | nonsyn | tCt | tTt | 10307 | 10304 | 0.999709 | 8654-8656 |
ORF1ab/nsp4 | 34 | S34F | S2797F | nonsyn | tCT | tTC | 10307 | 3 | 0.000291064 | 8654-8656 |
Details of the mutation S34F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 10304 | 10307 | All | 0.001971 |
ORF1ab/nsp4 | 34 | S34F | tCT | tTC | 3 | 10307 | All | 0.000001 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3402 | 3405 | B.1.1.7 | 0.003046 |
ORF1ab/nsp4 | 34 | S34F | tCT | tTC | 3 | 3405 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1358 | 1358 | AY.44 | 0.008266 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1055 | 1055 | AY.39 | 0.026071 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 573 | 573 | AY.103 | 0.003558 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 346 | 346 | AY.4 | 0.000539 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 340 | 340 | B.1.617.2 | 0.00128 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 326 | 326 | B.1 | 0.002986 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 159 | 159 | B.1.2 | 0.0014 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 154 | 154 | B.1.351 | 0.004578 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 131 | 131 | AY.25 | 0.000788 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 129 | 129 | B.1.565 | 0.104538 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 119 | 119 | B.1.429 | 0.0028 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 110 | 110 | AY.43 | 0.000487 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 82 | 82 | P.1 | 0.001292 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 76 | 76 | B.1.177 | 0.001001 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 74 | 74 | AY.3 | 0.000736 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 67 | 67 | B.1.1.37 | 0.012922 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 60 | 60 | AY.117 | 0.005071 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 59 | 59 | B.1.596 | 0.005141 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 53 | 53 | B.1.1 | 0.000961 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 51 | 51 | B.1.36.37 | 0.141667 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 43 | 43 | B.1.160 | 0.001341 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 42 | 42 | B.1.1.431 | 0.677419 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 41 | 41 | B.1.1.434 | 0.014291 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 41 | 41 | B.1.1.519 | 0.001628 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 37 | 37 | AY.102 | 0.000981 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 37 | 37 | AY.4.2 | 0.000802 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 36 | 36 | B.1.1.328 | 0.610169 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 31 | 31 | B.1.1.265 | 0.097792 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 29 | 29 | B.1.139 | 0.021261 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 28 | 28 | AY.20 | 0.001088 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 28 | 28 | AY.46.6 | 0.002022 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 27 | 27 | B.1.526 | 0.000635 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 26 | 26 | B.1.1.8 | 0.09319 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 24 | 24 | B.1.351.3 | 0.021034 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 21 | 21 | B.1.617.1 | 0.002708 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 20 | 20 | AY.5 | 0.000413 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 20 | 20 | B.1.609 | 0.009588 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 19 | 19 | B.1.497 | 0.00598 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 19 | 19 | Q.1 | 0.0024 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 18 | 18 | AY.34 | 0.001745 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 18 | 18 | AY.9.1 | 0.001507 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 18 | 18 | B.1.234 | 0.002375 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 17 | 17 | AY.118 | 0.001065 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 17 | 17 | AY.33 | 0.001135 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 17 | 17 | Q.8 | 0.002803 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 16 | 16 | B.1.177.81 | 0.003029 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 16 | 16 | C.36.3 | 0.009075 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 15 | 15 | AY.100 | 0.00069 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 15 | 15 | AY.99.2 | 0.001382 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 13 | 13 | B.1.621 | 0.001151 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 12 | 12 | AY.46.4 | 0.001974 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 12 | 12 | B.1.160.16 | 0.011152 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 12 | 12 | B.1.177.21 | 0.000918 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 11 | 11 | AY.61 | 0.001153 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 11 | 11 | B.1.1.63 | 0.004244 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 11 | 11 | B.1.240 | 0.002371 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 11 | 11 | B.1.258 | 0.000732 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 10 | 10 | AY.119 | 0.000353 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 10 | 10 | AY.23 | 0.000697 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 10 | 10 | AY.75 | 0.00056 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 10 | 10 | B.1.1.306 | 0.004384 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 10 | 10 | B.1.221 | 0.00071 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 10 | 10 | B.1.298 | 0.021142 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 9 | 9 | AY.3.1 | 0.000767 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 9 | 9 | B.1.396 | 0.006351 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 9 | 9 | B.1.525 | 0.001018 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 9 | 9 | B.1.637 | 0.000658 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 8 | 8 | AY.121 | 0.001083 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 8 | 8 | B.1.1.317 | 0.003294 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 8 | 8 | B.1.517 | 0.003416 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 8 | 8 | B.1.568 | 0.008889 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 8 | 8 | C.23 | 0.046512 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 8 | 8 | P.2 | 0.001493 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 7 | 7 | AY.113 | 0.000997 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 7 | 7 | AY.69 | 0.001307 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 7 | 7 | B.1.1.222 | 0.001428 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 7 | 7 | B.1.1.375 | 0.083333 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 7 | 7 | B.1.177.11 | 0.011885 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 7 | 7 | Q.3 | 0.001015 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 6 | 6 | B.1.177.10 | 0.005268 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 6 | 6 | B.1.619.1 | 0.003849 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 6 | 6 | P.1.2 | 0.006936 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 5 | 5 | AY.32 | 0.002662 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 5 | 5 | AY.4.4 | 0.002046 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 5 | 5 | B.1.1.157 | 0.004566 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 5 | 5 | B.1.1.374 | 0.011876 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 5 | 5 | B.1.576 | 0.004533 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 5 | 5 | B.1.582 | 0.002453 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | AY.10 | 0.00212 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | AY.35 | 0.000932 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | AY.7 | 0.000784 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | AY.95 | 0.003044 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | B | 0.000511 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | B.1.1.25 | 0.002274 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | B.1.177.16 | 0.002658 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | B.1.232 | 0.002149 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | P.1.1 | 0.001271 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 4 | 4 | P.1.16 | 0.001496 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | AY.101 | 0.001471 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.1.163 | 0.022901 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.1.196 | 0.017143 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.1.322 | 0.026316 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.128 | 0.001906 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.13 | 0.007126 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.177.23 | 0.009709 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.177.72 | 0.010169 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.404 | 0.003906 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | C.1 | 0.007177 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 3 | 3 | C.7 | 0.103448 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | A | 0.000774 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | A.2.4 | 0.006734 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | A.3 | 0.004193 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.144 | 0.057143 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.204 | 0.006079 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.27 | 0.011299 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.280 | 0.006173 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.333 | 0.002153 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.335 | 0.025974 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.442 | 0.037037 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.1.89 | 0.012121 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.177.46 | 0.001837 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.177.63 | 0.005405 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.189 | 0.008584 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.195 | 0.01005 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.258.11 | 0.000793 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.530 | 0.014286 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.546 | 0.007407 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.558 | 0.009132 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.1.606 | 0.012048 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | C.1.1 | 0.153846 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AA.1 | 0.007246 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AH.2 | 0.012048 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.282 | 0.011628 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.355 | 0.015385 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.383 | 0.0625 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.1.59 | 0.006494 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.180 | 0.05 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.258.2 | 0.004505 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.556 | 0.007519 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.616 | 0.02439 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.4.6 | 0.016667 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | B.6.8 | 0.008264 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | P.1.11 | 0.010204 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | Q.6 | 0.006623 |
ORF1ab/nsp4 | 34 | S34F | tCt | tTt | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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