CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = S281S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4281S281SS3044SsyntcAtcG9367020.759395-9397
ORF1ab/nsp4281S281SS3044SsyntcAtcT9362330.2489329395-9397
ORF1ab/nsp4281S281SS3044SsyntcAtcC93610.001068389395-9397

Details of the mutation S281S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4281S281StcAtcG702936All0.000134
ORF1ab/nsp4281S281StcAtcT233936All0.000045
ORF1ab/nsp4281S281StcAtcC1936All0
ORF1ab/nsp4281S281StcAtcT204215B.1.1.70.000183
ORF1ab/nsp4281S281StcAtcG11215B.1.1.70.00001
ORF1ab/nsp4281S281StcAtcG188188B.1.517.10.989474
ORF1ab/nsp4281S281StcAtcG125125B.1.5170.053373
ORF1ab/nsp4281S281StcAtcG115117AY.40.000179
ORF1ab/nsp4281S281StcAtcT2117AY.40.000003
ORF1ab/nsp4281S281StcAtcG5151B.1.3480.927273
ORF1ab/nsp4281S281StcAtcG3434B.1.4290.0008
ORF1ab/nsp4281S281StcAtcG2130AY.1030.00013
ORF1ab/nsp4281S281StcAtcT930AY.1030.000056
ORF1ab/nsp4281S281StcAtcG2929AY.440.000177
ORF1ab/nsp4281S281StcAtcG2021B.1.617.20.000075
ORF1ab/nsp4281S281StcAtcT121B.1.617.20.000004
ORF1ab/nsp4281S281StcAtcG1010AY.430.000044
ORF1ab/nsp4281S281StcAtcG610B.1.10.000109
ORF1ab/nsp4281S281StcAtcT410B.1.10.000073
ORF1ab/nsp4281S281StcAtcG99B.1.177.350.00622
ORF1ab/nsp4281S281StcAtcG88AY.250.000048
ORF1ab/nsp4281S281StcAtcT47B.10.000037
ORF1ab/nsp4281S281StcAtcG37B.10.000027
ORF1ab/nsp4281S281StcAtcG66AY.60.000247
ORF1ab/nsp4281S281StcAtcG44AY.750.000224
ORF1ab/nsp4281S281StcAtcG44B.1.20.000035
ORF1ab/nsp4281S281StcAtcG33AY.730.001996
ORF1ab/nsp4281S281StcAtcG33B.1.1.100.003344
ORF1ab/nsp4281S281StcAtcG33B.1.1.410.018987
ORF1ab/nsp4281S281StcAtcG33B.1.3510.000089
ORF1ab/nsp4281S281StcAtcG33B.1.4270.000151
ORF1ab/nsp4281S281StcAtcG33P.10.000047
ORF1ab/nsp4281S281StcAtcG22AY.1140.000462
ORF1ab/nsp4281S281StcAtcG22AY.200.000078
ORF1ab/nsp4281S281StcAtcG22AY.600.001876
ORF1ab/nsp4281S281StcAtcT22AY.980.000158
ORF1ab/nsp4281S281StcAtcG22B.1.1.2690.002706
ORF1ab/nsp4281S281StcAtcG22B.1.1.4160.00181
ORF1ab/nsp4281S281StcAtcG22B.1.1.5190.000079
ORF1ab/nsp4281S281StcAtcG22B.1.177.120.000303
ORF1ab/nsp4281S281StcAtcG22B.1.177.420.001789
ORF1ab/nsp4281S281StcAtcG11A.210.00277
ORF1ab/nsp4281S281StcAtcG11AY.1170.000085
ORF1ab/nsp4281S281StcAtcG11AY.230.00007
ORF1ab/nsp4281S281StcAtcG11AY.290.000016
ORF1ab/nsp4281S281StcAtcT11AY.310.018519
ORF1ab/nsp4281S281StcAtcG11AY.390.000025
ORF1ab/nsp4281S281StcAtcG11AY.4.10.000737
ORF1ab/nsp4281S281StcAtcG11AY.4.20.000022
ORF1ab/nsp4281S281StcAtcG11AY.420.00004
ORF1ab/nsp4281S281StcAtcG11AY.46.20.000635
ORF1ab/nsp4281S281StcAtcG11AY.50.000021
ORF1ab/nsp4281S281StcAtcT11AY.590.00053
ORF1ab/nsp4281S281StcAtcT11AY.840.000437
ORF1ab/nsp4281S281StcAtcT11AY.9.20.000037
ORF1ab/nsp4281S281StcAtcG11AY.99.20.000092
ORF1ab/nsp4281S281StcAtcG11B.1.1.2140.000055
ORF1ab/nsp4281S281StcAtcG11B.1.1.250.000569
ORF1ab/nsp4281S281StcAtcT11B.1.1770.000013
ORF1ab/nsp4281S281StcAtcG11B.1.177.150.000631
ORF1ab/nsp4281S281StcAtcG11B.1.177.230.003236
ORF1ab/nsp4281S281StcAtcC11B.1.2100.002132
ORF1ab/nsp4281S281StcAtcG11B.1.2430.00007
ORF1ab/nsp4281S281StcAtcG11B.1.258.170.000104
ORF1ab/nsp4281S281StcAtcG11B.1.3240.001605
ORF1ab/nsp4281S281StcAtcT11B.1.5300.007143
ORF1ab/nsp4281S281StcAtcT11B.1.5330.009615
ORF1ab/nsp4281S281StcAtcG11B.1.5960.000087
ORF1ab/nsp4281S281StcAtcG11B.6.60.000889
ORF1ab/nsp4281S281StcAtcG11C.360.000911
ORF1ab/nsp4281S281StcAtcG11N.60.007092
ORF1ab/nsp4281S281StcAtcG11P.1.70.000319
ORF1ab/nsp4281S281StcAtcG11P.30.001595