CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = R78S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp478R78SR2841SnonsynCgtAgt26240.9230778786-8788
ORF1ab/nsp478R78SR2841SnonsynCgTAgC2610.03846158786-8788
ORF1ab/nsp478R78SR2841SnonsynCGTTCA2610.03846158786-8788

Details of the mutation R78S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp478R78SCgtAgt2426All0.000005
ORF1ab/nsp478R78SCgTAgC126All0
ORF1ab/nsp478R78SCGTTCA126All0
ORF1ab/nsp478R78SCgtAgt89AY.250.000048
ORF1ab/nsp478R78SCGTTCA19AY.250.000006
ORF1ab/nsp478R78SCgtAgt44AY.40.000006
ORF1ab/nsp478R78SCgtAgt220.111111
ORF1ab/nsp478R78SCgtAgt22B.1.1.5190.000079
ORF1ab/nsp478R78SCgtAgt11AY.1030.000006
ORF1ab/nsp478R78SCgtAgt11AY.230.00007
ORF1ab/nsp478R78SCgtAgt11AY.30.00001
ORF1ab/nsp478R78SCgtAgt11AY.390.000025
ORF1ab/nsp478R78SCgtAgt11AY.430.000004
ORF1ab/nsp478R78SCgtAgt11AY.460.000104
ORF1ab/nsp478R78SCgTAgC11B.10.000009
ORF1ab/nsp478R78SCgtAgt11B.1.1.70.000001
ORF1ab/nsp478R78SCgtAgt11B.1.617.20.000004