CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = R78R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp478R78RR2841RsyncgTcgC4884400.9016398786-8788
ORF1ab/nsp478R78RR2841RsyncgTcgA488250.05122958786-8788
ORF1ab/nsp478R78RR2841RsyncgTcgG488220.0450828786-8788
ORF1ab/nsp478R78RR2841RsynCgTAgG48810.002049188786-8788

Details of the mutation R78R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp478R78RcgTcgC440488All0.000084
ORF1ab/nsp478R78RcgTcgA25488All0.000005
ORF1ab/nsp478R78RcgTcgG22488All0.000004
ORF1ab/nsp478R78RCgTAgG1488All0
ORF1ab/nsp478R78RcgTcgC244244B.1.390.953125
ORF1ab/nsp478R78RcgTcgC3434AY.46.60.002455
ORF1ab/nsp478R78RcgTcgC3434B.1.5260.000799
ORF1ab/nsp478R78RcgTcgC1218B.1.1.70.000011
ORF1ab/nsp478R78RcgTcgG518B.1.1.70.000004
ORF1ab/nsp478R78RcgTcgA118B.1.1.70.000001
ORF1ab/nsp478R78RcgTcgC1314AY.40.00002
ORF1ab/nsp478R78RcgTcgA114AY.40.000002
ORF1ab/nsp478R78RcgTcgC1314B.1.617.20.000049
ORF1ab/nsp478R78RcgTcgA114B.1.617.20.000004
ORF1ab/nsp478R78RcgTcgC1313AY.250.000078
ORF1ab/nsp478R78RcgTcgA1212AY.60.000494
ORF1ab/nsp478R78RcgTcgC1011AY.440.000061
ORF1ab/nsp478R78RcgTcgA111AY.440.000006
ORF1ab/nsp478R78RcgTcgC1111B.10.000101
ORF1ab/nsp478R78RcgTcgG78AY.30.00007
ORF1ab/nsp478R78RcgTcgC18AY.30.00001
ORF1ab/nsp478R78RcgTcgC66AY.200.000233
ORF1ab/nsp478R78RcgTcgC25AY.430.000009
ORF1ab/nsp478R78RcgTcgA15AY.430.000004
ORF1ab/nsp478R78RCgTAgG15AY.430.000004
ORF1ab/nsp478R78RcgTcgG15AY.430.000004
ORF1ab/nsp478R78RcgTcgC55B.1.1.3110.001791
ORF1ab/nsp478R78RcgTcgC44B.1.5640.001704
ORF1ab/nsp478R78RcgTcgC33AY.420.000121
ORF1ab/nsp478R78RcgTcgA23AY.690.000373
ORF1ab/nsp478R78RcgTcgC13AY.690.000187
ORF1ab/nsp478R78RcgTcgC33AY.880.002653
ORF1ab/nsp478R78RcgTcgC33AY.920.000862
ORF1ab/nsp478R78RcgTcgC23B.1.1770.000026
ORF1ab/nsp478R78RcgTcgG13B.1.1770.000013
ORF1ab/nsp478R78RcgTcgC22B.1.1.250.001137
ORF1ab/nsp478R78RcgTcgG22B.1.1110.00235
ORF1ab/nsp478R78RcgTcgC22B.1.177.500.00939
ORF1ab/nsp478R78RcgTcgC22B.1.20.000018
ORF1ab/nsp478R78RcgTcgC22C.360.001821
ORF1ab/nsp478R78RcgTcgC12P.10.000016
ORF1ab/nsp478R78RcgTcgA12P.10.000016
ORF1ab/nsp478R78RcgTcgG11A.20.000662
ORF1ab/nsp478R78RcgTcgC11AY.1020.000027
ORF1ab/nsp478R78RcgTcgC11AY.1180.000063
ORF1ab/nsp478R78RcgTcgC11AY.190.00114
ORF1ab/nsp478R78RcgTcgG11AY.230.00007
ORF1ab/nsp478R78RcgTcgA11AY.330.000067
ORF1ab/nsp478R78RcgTcgC11AY.390.000025
ORF1ab/nsp478R78RcgTcgC11AY.4.2.10.000149
ORF1ab/nsp478R78RcgTcgC11AY.450.000122
ORF1ab/nsp478R78RcgTcgA11AY.50.000021
ORF1ab/nsp478R78RcgTcgC11AY.540.000095
ORF1ab/nsp478R78RcgTcgC11AY.610.000105
ORF1ab/nsp478R78RcgTcgA11AY.750.000056
ORF1ab/nsp478R78RcgTcgG11B.1.10.000018
ORF1ab/nsp478R78RcgTcgC11B.1.1.3070.002532
ORF1ab/nsp478R78RcgTcgA11B.1.1.5190.00004
ORF1ab/nsp478R78RcgTcgG11B.1.110.30.000718
ORF1ab/nsp478R78RcgTcgC11B.1.177.820.000477
ORF1ab/nsp478R78RcgTcgC11B.1.258.90.005
ORF1ab/nsp478R78RcgTcgC11B.1.360.000146
ORF1ab/nsp478R78RcgTcgC11B.1.36.80.001
ORF1ab/nsp478R78RcgTcgC11B.1.3960.000706
ORF1ab/nsp478R78RcgTcgC11B.1.4000.000429
ORF1ab/nsp478R78RcgTcgC11B.1.6090.000479
ORF1ab/nsp478R78RcgTcgC11B.1.6370.000073
ORF1ab/nsp478R78RcgTcgG11B.1.690.035714
ORF1ab/nsp478R78RcgTcgG11B.1.910.002075
ORF1ab/nsp478R78RcgTcgA11D.20.000075