CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = R401del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4401R401del1R3164del1delcGtc-t620.3333339755-9757
ORF1ab/nsp4401R401del1R3164del1delCgTGg-620.3333339755-9757
ORF1ab/nsp4401R401del1R3164del1delCgt-gt620.3333339755-9757

Details of the mutation R401del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4401R401del1cGtc-t26All0
ORF1ab/nsp4401R401del1CgTGg-26All0
ORF1ab/nsp4401R401del1Cgt-gt26All0
ORF1ab/nsp4401R401del1CgTGg-220.111111
ORF1ab/nsp4401R401del1cGtc-t11AY.440.000006
ORF1ab/nsp4401R401del1Cgt-gt11AY.9.20.000037
ORF1ab/nsp4401R401del1cGtc-t11B.10.000009
ORF1ab/nsp4401R401del1Cgt-gt11B.1.20.000009