CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = R401L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4401R401LR3164LnonsyncGtcTt80790.98759755-9757
ORF1ab/nsp4401R401LR3164LnonsyncGTcTC8010.01259755-9757

Details of the mutation R401L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4401R401LcGtcTt7980All0.000015
ORF1ab/nsp4401R401LcGTcTC180All0
ORF1ab/nsp4401R401LcGtcTt2424A.2.40.080808
ORF1ab/nsp4401R401LcGtcTt1010B.1.1.70.000009
ORF1ab/nsp4401R401LcGtcTt66A.2.50.002994
ORF1ab/nsp4401R401LcGtcTt66AY.250.000036
ORF1ab/nsp4401R401LcGtcTt55AY.440.00003
ORF1ab/nsp4401R401LcGtcTt44AY.1030.000025
ORF1ab/nsp4401R401LcGtcTt33AY.1020.00008
ORF1ab/nsp4401R401LcGtcTt33AY.40.000005
ORF1ab/nsp4401R401LcGtcTt22AY.290.000032
ORF1ab/nsp4401R401LcGtcTt22B.1.617.20.000008
ORF1ab/nsp4401R401LcGtcTt11A0.000387
ORF1ab/nsp4401R401LcGtcTt11A.20.000662
ORF1ab/nsp4401R401LcGtcTt11AY.120.20.001285
ORF1ab/nsp4401R401LcGtcTt11AY.140.000088
ORF1ab/nsp4401R401LcGtcTt11AY.30.00001
ORF1ab/nsp4401R401LcGtcTt11AY.420.00004
ORF1ab/nsp4401R401LcGtcTt11AY.430.000004
ORF1ab/nsp4401R401LcGTcTC11AY.840.000437
ORF1ab/nsp4401R401LcGtcTt11B.1.10.000018
ORF1ab/nsp4401R401LcGtcTt11B.1.1.2690.001353
ORF1ab/nsp4401R401LcGtcTt11B.1.1600.000031
ORF1ab/nsp4401R401LcGtcTt11B.1.160.220.006757
ORF1ab/nsp4401R401LcGtcTt11B.1.2060.000816
ORF1ab/nsp4401R401LcGtcTt11B.1.4290.000024
ORF1ab/nsp4401R401LcGtcTt11B.1.5750.000303