CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = R401H

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4401R401HR3164HnonsyncGtcAt2197219719755-9757

Details of the mutation R401H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4401R401HcGtcAt21972197All0.00042
ORF1ab/nsp4401R401HcGtcAt847847B.1.1.70.000758
ORF1ab/nsp4401R401HcGtcAt469469B.1.6270.947475
ORF1ab/nsp4401R401HcGtcAt291291B.1.6310.979798
ORF1ab/nsp4401R401HcGtcAt140140B.1.1.5280.673077
ORF1ab/nsp4401R401HcGtcAt9191AY.40.000142
ORF1ab/nsp4401R401HcGtcAt5151AY.1180.003195
ORF1ab/nsp4401R401HcGtcAt3939B.10.000357
ORF1ab/nsp4401R401HcGtcAt3333B.1.1600.001029
ORF1ab/nsp4401R401HcGtcAt2525AY.370.007901
ORF1ab/nsp4401R401HcGtcAt2121AY.30.000209
ORF1ab/nsp4401R401HcGtcAt2121B.1.5760.019039
ORF1ab/nsp4401R401HcGtcAt1414AY.430.000062
ORF1ab/nsp4401R401HcGtcAt1414B.1.10.000254
ORF1ab/nsp4401R401HcGtcAt1111AY.1030.000068
ORF1ab/nsp4401R401HcGtcAt1111B.1.617.20.000041
ORF1ab/nsp4401R401HcGtcAt1010B.1.20.000088
ORF1ab/nsp4401R401HcGtcAt99AY.250.000054
ORF1ab/nsp4401R401HcGtcAt99AY.440.000055
ORF1ab/nsp4401R401HcGtcAt77AF.10.259259
ORF1ab/nsp4401R401HcGtcAt77AY.470.000218
ORF1ab/nsp4401R401HcGtcAt66B.1.1.340.078947
ORF1ab/nsp4401R401HcGtcAt66B.1.3510.000178
ORF1ab/nsp4401R401HcGtcAt44AY.1190.000141
ORF1ab/nsp4401R401HcGtcAt44B.1.1.5190.000159
ORF1ab/nsp4401R401HcGtcAt33AY.230.000209
ORF1ab/nsp4401R401HcGtcAt33B.1.1.5230.004687
ORF1ab/nsp4401R401HcGtcAt22AD.20.000438
ORF1ab/nsp4401R401HcGtcAt22AY.290.000032
ORF1ab/nsp4401R401HcGtcAt22AY.340.000194
ORF1ab/nsp4401R401HcGtcAt22AY.7.20.001119
ORF1ab/nsp4401R401HcGtcAt22B0.000256
ORF1ab/nsp4401R401HcGtcAt22B.1.1.2070.002364
ORF1ab/nsp4401R401HcGtcAt22B.1.1.2410.004141
ORF1ab/nsp4401R401HcGtcAt22B.1.1.250.001137
ORF1ab/nsp4401R401HcGtcAt22B.1.4000.000858
ORF1ab/nsp4401R401HcGtcAt22P.10.000032
ORF1ab/nsp4401R401HcGtcAt11A.20.000662
ORF1ab/nsp4401R401HcGtcAt11AY.1020.000027
ORF1ab/nsp4401R401HcGtcAt11AY.1140.000231
ORF1ab/nsp4401R401HcGtcAt11AY.120.000316
ORF1ab/nsp4401R401HcGtcAt11AY.200.000039
ORF1ab/nsp4401R401HcGtcAt11AY.4.20.000022
ORF1ab/nsp4401R401HcGtcAt11AY.420.00004
ORF1ab/nsp4401R401HcGtcAt11AY.50.000021
ORF1ab/nsp4401R401HcGtcAt11AY.60.000041
ORF1ab/nsp4401R401HcGtcAt11AY.610.000105
ORF1ab/nsp4401R401HcGtcAt11AY.640.000595
ORF1ab/nsp4401R401HcGtcAt11AY.98.10.000048
ORF1ab/nsp4401R401HcGtcAt11B.1.1.280.000311
ORF1ab/nsp4401R401HcGtcAt11B.1.1.4480.002033
ORF1ab/nsp4401R401HcGtcAt11B.1.1570.002985
ORF1ab/nsp4401R401HcGtcAt11B.1.1770.000013
ORF1ab/nsp4401R401HcGtcAt11B.1.177.730.000566
ORF1ab/nsp4401R401HcGtcAt11B.1.2060.000816
ORF1ab/nsp4401R401HcGtcAt11B.1.3560.001727
ORF1ab/nsp4401R401HcGtcAt11B.1.360.000146
ORF1ab/nsp4401R401HcGtcAt11B.1.36.290.000517
ORF1ab/nsp4401R401HcGtcAt11B.1.3980.002976
ORF1ab/nsp4401R401HcGtcAt11B.1.4270.00005
ORF1ab/nsp4401R401HcGtcAt11B.1.4290.000024
ORF1ab/nsp4401R401HcGtcAt11B.1.4360.001029
ORF1ab/nsp4401R401HcGtcAt11B.1.575.10.002439
ORF1ab/nsp4401R401HcGtcAt11B.1.5960.000087
ORF1ab/nsp4401R401HcGtcAt11B.1.6280.000352
ORF1ab/nsp4401R401HcGtcAt11C.140.004329
ORF1ab/nsp4401R401HcGtcAt11D.20.000075
ORF1ab/nsp4401R401HcGtcAt11Q.10.000126