CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = R400S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4400R400SR3163SnonsynagAagC321132080.9990669752-9754
ORF1ab/nsp4400R400SR3163SnonsynagAagT321130.0009342889752-9754

Details of the mutation R400S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4400R400SagAagC32083211All0.000614
ORF1ab/nsp4400R400SagAagT33211All0.000001
ORF1ab/nsp4400R400SagAagC27752775B.1.6280.977801
ORF1ab/nsp4400R400SagAagC281281B.1.6340.962329
ORF1ab/nsp4400R400SagAagC8989B.10.000815
ORF1ab/nsp4400R400SagAagC2121B.1.1.70.000019
ORF1ab/nsp4400R400SagAagC99P.1.120.004356
ORF1ab/nsp4400R400SagAagC66AY.1030.000037
ORF1ab/nsp4400R400SagAagC55AY.40.000008
ORF1ab/nsp4400R400SagAagC55B.1.10.000091
ORF1ab/nsp4400R400SagAagC44B.1.6270.008081
ORF1ab/nsp4400R400SagAagC22B.1.177.730.001133
ORF1ab/nsp4400R400SagAagC22B.1.5960.000174
ORF1ab/nsp4400R400SagAagT11AY.250.000006
ORF1ab/nsp4400R400SagAagC11AY.9.20.000037
ORF1ab/nsp4400R400SagAagC11B.1.1.1170.009709
ORF1ab/nsp4400R400SagAagT11B.1.1.1940.00495
ORF1ab/nsp4400R400SagAagC11B.1.1.2200.001859
ORF1ab/nsp4400R400SagAagC11B.1.2410.000812
ORF1ab/nsp4400R400SagAagC11B.1.2470.014925
ORF1ab/nsp4400R400SagAagC11B.1.3510.00003
ORF1ab/nsp4400R400SagAagC11B.1.3750.00082
ORF1ab/nsp4400R400SagAagC11B.1.6190.000871
ORF1ab/nsp4400R400SagAagT11D.20.000075
ORF1ab/nsp4400R400SagAagC11P.10.000016