CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : Mut = R222R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4222R222RR2985RsynagGagA788277930.9887089218-9220
ORF1ab/nsp4222R222RR2985RsynAggCgg7882890.01129169218-9220

Details of the mutation R222R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4222R222RagGagA77937882All0.001491
ORF1ab/nsp4222R222RAggCgg897882All0.000017
ORF1ab/nsp4222R222RagGagA25152515AY.410.739271
ORF1ab/nsp4222R222RagGagA24282429B.1.617.20.009142
ORF1ab/nsp4222R222RAggCgg12429B.1.617.20.000004
ORF1ab/nsp4222R222RagGagA12391239AY.1030.007693
ORF1ab/nsp4222R222RagGagA209297B.1.1.70.000187
ORF1ab/nsp4222R222RAggCgg88297B.1.1.70.000079
ORF1ab/nsp4222R222RagGagA281281AY.40.000437
ORF1ab/nsp4222R222RagGagA247247AY.420.009937
ORF1ab/nsp4222R222RagGagA102102B.1.438.10.010941
ORF1ab/nsp4222R222RagGagA9191AY.250.000547
ORF1ab/nsp4222R222RagGagA9191B.1.20.000801
ORF1ab/nsp4222R222RagGagA8080AY.430.000354
ORF1ab/nsp4222R222RagGagA5050AY.1020.001326
ORF1ab/nsp4222R222RagGagA3636B.1.5260.000846
ORF1ab/nsp4222R222RagGagA2626AY.46.60.001877
ORF1ab/nsp4222R222RagGagA2323AY.440.00014
ORF1ab/nsp4222R222RagGagA2222AY.1070.010252
ORF1ab/nsp4222R222RagGagA2121AY.470.000653
ORF1ab/nsp4222R222RagGagA1414B.1.3510.000416
ORF1ab/nsp4222R222RagGagA1313B.1.4270.000656
ORF1ab/nsp4222R222RagGagA1212B.1.10.000218
ORF1ab/nsp4222R222RagGagA1111AY.30.000109
ORF1ab/nsp4222R222RagGagA1111B.1.1390.008065
ORF1ab/nsp4222R222RagGagA99AY.1190.000318
ORF1ab/nsp4222R222RagGagA99B.1.4290.000212
ORF1ab/nsp4222R222RagGagA88AY.1110.001465
ORF1ab/nsp4222R222RagGagA88AY.450.000973
ORF1ab/nsp4222R222RagGagA88AY.750.000448
ORF1ab/nsp4222R222RagGagA88B.1.2580.000532
ORF1ab/nsp4222R222RagGagA88B.1.258.170.000832
ORF1ab/nsp4222R222RagGagA88B.1.4040.010417
ORF1ab/nsp4222R222RagGagA88P.10.000126
ORF1ab/nsp4222R222RagGagA77AY.50.000145
ORF1ab/nsp4222R222RagGagA77AY.740.00081
ORF1ab/nsp4222R222RagGagA77AY.980.000553
ORF1ab/nsp4222R222RagGagA77B.1.5510.009032
ORF1ab/nsp4222R222RagGagA66P.1.150.001394
ORF1ab/nsp4222R222RagGagA55AY.390.000124
ORF1ab/nsp4222R222RagGagA55AY.460.00052
ORF1ab/nsp4222R222RagGagA55AY.770.005637
ORF1ab/nsp4222R222RagGagA55AY.920.001436
ORF1ab/nsp4222R222RagGagA55B.10.000046
ORF1ab/nsp4222R222RagGagA55B.1.1770.000066
ORF1ab/nsp4222R222RagGagA44AY.330.000267
ORF1ab/nsp4222R222RagGagA44AY.5.30.00135
ORF1ab/nsp4222R222RagGagA44B.1.36.170.001976
ORF1ab/nsp4222R222RagGagA33AY.220.006276
ORF1ab/nsp4222R222RagGagA33AY.610.000314
ORF1ab/nsp4222R222RagGagA33AY.640.001786
ORF1ab/nsp4222R222RagGagA33AY.840.001312
ORF1ab/nsp4222R222RagGagA33B.1.1.2410.006211
ORF1ab/nsp4222R222RagGagA33B.1.1.2840.000322
ORF1ab/nsp4222R222RagGagA33B.1.1.4340.001046
ORF1ab/nsp4222R222RagGagA33B.1.5950.000783
ORF1ab/nsp4222R222RagGagA33C.20.048387
ORF1ab/nsp4222R222RagGagA220.111111
ORF1ab/nsp4222R222RagGagA22AY.1000.000092
ORF1ab/nsp4222R222RagGagA22AY.1170.000169
ORF1ab/nsp4222R222RagGagA22AY.260.000057
ORF1ab/nsp4222R222RagGagA22AY.320.001065
ORF1ab/nsp4222R222RagGagA22AY.46.40.000329
ORF1ab/nsp4222R222RagGagA22AY.550.001835
ORF1ab/nsp4222R222RagGagA22AY.580.001815
ORF1ab/nsp4222R222RagGagA22AY.90.000135
ORF1ab/nsp4222R222RagGagA22AY.98.10.000097
ORF1ab/nsp4222R222RagGagA22B.1.1.1530.002191
ORF1ab/nsp4222R222RagGagA22B.1.1.280.000622
ORF1ab/nsp4222R222RagGagA22B.1.1.2980.001724
ORF1ab/nsp4222R222RagGagA22B.1.36.10.002281
ORF1ab/nsp4222R222RagGagA22B.1.4160.002538
ORF1ab/nsp4222R222RagGagA22B.1.5090.001732
ORF1ab/nsp4222R222RagGagA22C.370.000232
ORF1ab/nsp4222R222RagGagA22Q.10.000253
ORF1ab/nsp4222R222RagGagA22R.10.00018
ORF1ab/nsp4222R222RagGagA11A.10.000282
ORF1ab/nsp4222R222RagGagA11AP.10.001502
ORF1ab/nsp4222R222RagGagA11AY.1050.000643
ORF1ab/nsp4222R222RagGagA11AY.1060.000335
ORF1ab/nsp4222R222RagGagA11AY.1080.001103
ORF1ab/nsp4222R222RagGagA11AY.1130.000142
ORF1ab/nsp4222R222RagGagA11AY.1160.000287
ORF1ab/nsp4222R222RagGagA11AY.1180.000063
ORF1ab/nsp4222R222RagGagA11AY.1200.000037
ORF1ab/nsp4222R222RagGagA11AY.120.10.000321
ORF1ab/nsp4222R222RagGagA11AY.1210.000135
ORF1ab/nsp4222R222RagGagA11AY.160.00038
ORF1ab/nsp4222R222RagGagA11AY.200.000039
ORF1ab/nsp4222R222RagGagA11AY.230.00007
ORF1ab/nsp4222R222RagGagA11AY.240.000431
ORF1ab/nsp4222R222RagGagA11AY.270.000065
ORF1ab/nsp4222R222RagGagA11AY.290.000016
ORF1ab/nsp4222R222RagGagA11AY.300.000396
ORF1ab/nsp4222R222RagGagA11AY.4.20.000022
ORF1ab/nsp4222R222RagGagA11AY.46.20.000635
ORF1ab/nsp4222R222RagGagA11AY.520.000814
ORF1ab/nsp4222R222RagGagA11AY.540.000095
ORF1ab/nsp4222R222RagGagA11AY.570.000656
ORF1ab/nsp4222R222RagGagA11AY.820.001357
ORF1ab/nsp4222R222RagGagA11AY.870.000833
ORF1ab/nsp4222R222RagGagA11AY.910.00073
ORF1ab/nsp4222R222RagGagA11AY.930.000273
ORF1ab/nsp4222R222RagGagA11B0.000128
ORF1ab/nsp4222R222RagGagA11B.1.1.100.001115
ORF1ab/nsp4222R222RagGagA11B.1.1.1350.004695
ORF1ab/nsp4222R222RagGagA11B.1.1.1800.010753
ORF1ab/nsp4222R222RagGagA11B.1.1.3180.000302
ORF1ab/nsp4222R222RagGagA11B.1.1.330.000421
ORF1ab/nsp4222R222RagGagA11B.1.1.3540.004386
ORF1ab/nsp4222R222RagGagA11B.1.1.3690.000446
ORF1ab/nsp4222R222RagGagA11B.1.1.4400.011765
ORF1ab/nsp4222R222RagGagA11B.1.1260.001276
ORF1ab/nsp4222R222RagGagA11B.1.177.320.00135
ORF1ab/nsp4222R222RagGagA11B.1.177.70.000165
ORF1ab/nsp4222R222RagGagA11B.1.2210.000071
ORF1ab/nsp4222R222RagGagA11B.1.2410.000812
ORF1ab/nsp4222R222RagGagA11B.1.3500.002933
ORF1ab/nsp4222R222RagGagA11B.1.351.20.000303
ORF1ab/nsp4222R222RagGagA11B.1.36.100.004785
ORF1ab/nsp4222R222RagGagA11B.1.3610.001289
ORF1ab/nsp4222R222RagGagA11B.1.5610.000397
ORF1ab/nsp4222R222RagGagA11B.1.5630.016949
ORF1ab/nsp4222R222RagGagA11B.1.6090.000479
ORF1ab/nsp4222R222RagGagA11B.1.670.043478
ORF1ab/nsp4222R222RagGagA11C.10.002392
ORF1ab/nsp4222R222RagGagA11P.1.10.000318
ORF1ab/nsp4222R222RagGagA11P.1.100.000269
ORF1ab/nsp4222R222RagGagA11P.1.120.000484
ORF1ab/nsp4222R222RagGagA11P.1.140.000048
ORF1ab/nsp4222R222RagGagA11P.30.001595
ORF1ab/nsp4222R222RagGagA11Y.10.012821